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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071413 ID=TCONS_00071413|Name=TCONS_00071413|organism=Clytia hemisphaerica|type=transcript|length=3320bpRun BLAST on NCBI protein sequence of TCONS_00071413-protein >TCONS_00071413-protein ID=TCONS_00071413-protein|Name=TCONS_00071413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp MPLAQCADPWQNLNVAQDAEMFASQEDLTAAVEPSTSEPNDDSSEFDITTRun BLAST on NCBI transcript from alignment at scaffold_60:1271863..1319194- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071413 ID=TCONS_00071413|Name=TCONS_00071413|organism=Clytia hemisphaerica|type=transcript|length=47332bp|location=Sequence derived from alignment at scaffold_60:1271863..1319194- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:1271863..1319194- >TCONS_00071413 ID=TCONS_00071413|Name=TCONS_00071413|organism=Clytia hemisphaerica|type=CDS|length=45300bp|location=Sequence derived from alignment at scaffold_60:1271863..1319194- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071413 vs. Swiss-Prot (Human)
Match: KS6A3 (Ribosomal protein S6 kinase alpha-3 OS=Homo sapiens GN=RPS6KA3 PE=1 SV=1) HSP 1 Score: 976.082 bits (2522), Expect = 0.000e+0 Identity = 483/750 (64.40%), Postives = 578/750 (77.07%), Query Frame = 3
Query: 312 MPLAQCADPWQNLNV------AQDAEMFASQEDLTAAVEPSTSEPNDDSSEFDITTMMKTSSKVMKAEPSHFELLKVLGQGSFGKVFMVRKIVGHDIGHIYAMKVLKKATLKVRDRVRTKMERDILADVAHPFIVKLHYAFQTAGKLYLVLEFLRGGDLFTRLSKEVMFTEDDVKIYLAELAMALDHLHTLGIVYRDLKPENILLDVDGHIKLTDFGLSKESIFDVEKKTYSFCGTVEYMAPEVVNRRGHGTASDWWSFGVLMYEMLTGALPFQGANRKDTMTMILKAKLGMPQFLSANAQLLLRALFKRNPQNRLGY-KNGLAEIKTQAFFANIDFDLLYKKAIHPPFKPAVSRNDDTFYFDKEFTSRDPKDSPAVPPSAGANQLFRGFSYVDPSALTEVPE-EAMEXXXXXXXXXXXXXXXDYVPTASTTVKNINDDYDIKEEIGVGAFSVCKRCVHRSSGKEYAVKIIDKSKRDPSEEVEILLRYGQHPNICTLRDVYEDARSSYLVMERMVGGELLDKIYRQKYLSEKETAYIMDVLTKTIDYLHQQGVVHRDLQPSNILFATENCTPESIRILDFGFAKQMRAENGLLMTPCYTANFVAPEVLKKQGYDAACDIWSLGVLMYTMLSGRTPFATGPEDTPTMILTRIGEGSINLSGGSWDNISDTAKDLLKKMLHIDPGRRLSASQVLTHNWLRHKSSLPERKITLTDTASRIKEAVRNTFTAMHKTPEQKP-LAAVNASGLHQRR 2534
MPLAQ ADPWQ + V A++ + + + P T E + E IT +K + KA+PS FELLKVLGQGSFGKVF+V+KI G D +YAMKVLKKATLKVRDRVRTKMERDIL +V HPFIVKLHYAFQT GKLYL+L+FLRGGDLFTRLSKEVMFTE+DVK YLAELA+ALDHLH+LGI+YRDLKPENILLD +GHIKLTDFGLSKESI D EKK YSFCGTVEYMAPEVVNRRGH ++DWWSFGVLM+EMLTG LPFQG +RK+TMTMILKAKLGMPQFLS AQ LLR LFKRNP NRLG +G+ EIK +FF+ ID++ LY++ IHPPFKPA R +DTFYFD EFT++ PKDSP +PPSA A+QLFRGFS+V A+T E +AM+ V V D Y++KE+IGVG++SVCKRC+H+++ E+AVKIIDKSKRDP+EE+EILLRYGQHPNI TL+DVY+D + Y+V E M GGELLDKI RQK+ SE+E + ++ +TKT++YLH QGVVHRDL+PSNIL+ E+ PESIRI DFGFAKQ+RAENGLLMTPCYTANFVAPEVLK+QGYDAACDIWSLGVL+YTML+G TPFA GP+DTP IL RIG G +LSGG W+++SDTAKDL+ KMLH+DP +RL+A+ VL H W+ H LP+ ++ D +K A+ T++A+++ Q P L V S L QRR
Sbjct: 1 MPLAQLADPWQKMAVESPSDSAENGQQIMDEPMGEEEINPQTEEVS--IKEIAITHHVKEGHE--KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI-DHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKPATGRPEDTFYFDPEFTAKTPKDSPGIPPSANAHQLFRGFSFV---AITSDDESQAMQTVGVH----------SIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQDAPHLVKGAMAATYSALNRN--QSPVLEPVGRSTLAQRR 730 The following BLAST results are available for this feature:
BLAST of TCONS_00071413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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