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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071381 ID=TCONS_00071381|Name=TCONS_00071381|organism=Clytia hemisphaerica|type=transcript|length=1074bp
GCTAAGACCTCGAACACATGTTTGGCAAGCATTCGATTTCACATTGACGA
AGTTTGGAGAATGGAACGTTTCGAAGCACCACAATATGCAGAATACAACa
aacttcaaaaatatttcttatacgGAGATGAAGAAGAAGCCTTCATGTCG
CATGTCATCACCAAACAACCTGATTTTTATCAGGTCGTACGTCTTGGTAA
ATTGCCACATTCAGTGGAACCTCAATTATTGAAACTTGGTCTGATGGTTG
AAATGTCAGCTATTCCTGGAACTCCATTGACAGTAGATGGTAAAATCATC
GACCCTCTTCAAACGACTCGATATGGTGGTAACTACAGAGGTCGGCAATT
CGCAGAATGCACAACTTCACTTTTGGTTGGTGGTGAGAATTGCAAAGTGT
ATTTCGATTCTGAATATTTGAACACACCTGTCACTGGAACTGATTGCTCA
TTGGTTTGAATCCGTACCATATCACAAACAATTAAATAATAATCTCAGTA
TATAAAAACCACTTTCTGTTNAACTGACTTATATATGTTCGTAAATCCGC
AATAATCAAATCATGTTAAATATGATATTTATTTTCTGTTATGTTaatga
atttcaatatttttgtaaaaataatatAGTTACAATCAAATTAATAATTC
CAAGTAAATTTAAACTGCAATTCAAACACACTGTTAAGTTTTTTCTTCAC
CAAATTTCCATGTGACAGTTACATTCACCCCTTTGGTTGTATactacacc
ttttcgaccatagccgccaattgctgcgggcattttttgtccactttatc
ccactaaaaccctCCCAGTTCCGCACcttatagacaatagaaaaatgtgt
caaaaaaggattggatcgagtttaggagaatagttaaataattaagtgcc
acgcacctgaccgcgcgactacggtcgaaatgGTGCATTATTCCACGATT
ATTCTGTTCTTTTAATTATCCGTACGATATTTTTTACCAACCCTCTTAAA
AACAGAACCATTAAACTTATTCTAGGATAAGTCACGGACTTTCTATCTCA
ATAAATGAcatttcaaaaataact Run BLAST on NCBI protein sequence of TCONS_00071381-protein >TCONS_00071381-protein ID=TCONS_00071381-protein|Name=TCONS_00071381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
AKTSNTCLASIRFHIDEVWRMERFEAPQYAEYNKLQKYFLYGDEEEAFMS
HVITKQPDFYQVVRLGKLPHSVEPQLLKLGLMVEMSAIPGTPLTVDGKII
DPLQTTRYGGNYRGRQFAECTTSLLVGGENCKVYFDSEYLNTPVTGTDCS
LV Run BLAST on NCBI transcript from alignment at scaffold_60:1020402..1023595- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071381 ID=TCONS_00071381|Name=TCONS_00071381|organism=Clytia hemisphaerica|type=transcript|length=3194bp|location=Sequence derived from alignment at scaffold_60:1020402..1023595- (Clytia hemisphaerica)
GCTAAGACCTCGAACACATGTTTGGCAAGCATTCGATTTCACATTGACGA
AGTTTGGAGAATGGAACGTTTCGAAGCACCACAATATGCAGAATACAACA
AACTTCAAAAATATTTCTTATACGGAGATGAAGAAGAAGCCTTCATGTCG
CATGTCATCACCAAACAACCTGATTTTTATCAGGTAAGACCAGTGAACTG
TTATCAGATAGAATAACATCTTACTTTGGCTGCGTCATCGTCTATTCAGA
TTCCTTTTGTTAAAAGTGATTATTGGTCGTAAAAACATTTTCTCAAAATC
TGAAGCATGGATAAAGATCTCTTTATAAGGGTATATTTTCACTAAAGTCT
GTCTCGAAATAATTTGCAGCTGGAGAAAAAAATGGCTGTAACTTTTGATA
GAATTCGAATCAAGTTGCGGTTTTGTGCTCGTTAAAAAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTCTTCAATC
TTAGATCATCATCACTGTGAAAAAATTTTTCAAAAATATTCATTTAATCA
AAAGATATCAAACAAAGTTTATTGCTGGTTGATCGAAAAAAGGTAGTTTT
TTTCGTTTTTTTTTGTCGTTTTTTACTACTTTATAGAGTCAACCAGCAAT
AAATTTTGTTTGATATCTTTTGAATGAATATTTTTGAGACATTTTTTGAC
AGTGATAATGATCTAAGATTGAAGAATCACTCCTGTGAAAATGATAATTA
TACCACATTTCTACAAGAAGTTGATTTTTTTCTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATATCTTTTTAA
CGAGCACAAAACCGCAACTTGATTCGAATTCTATCAAAAGTTACAGCCAT
TTTTTTCTCCAGCTGCAAATTATTTCGAGACAGACTTTACATTTTGTCTC
AGTTCAGAAAGATTTCATTTTAAAAAATGTTTGAAATAGCATACCGTCGC
GATTCTAAAAATAGACATTGATTTTTTAGTTTGACTGAAATTCAATCCCA
TCACCCTTTGCGTTTATTACGCTTGCACGCAAATTACACTCAATTACAAA
GAACAAGTAATAACTTTCATGACTTTTGAATTAAGACGAAAAGGATTGTG
GGATTGAATTTCGGTCAAATGAGAGAAGCAATAATCATGACGTTTGCACG
ACGAAGCGCTATTCAAAAATCTATTTCAGCTTACAATCTGAAATTTAGGA
GTTGAAATTCAGTGCTTTCATCAATTTTTCACTTCGTCAAAAACTATAAT
CTGAATTCCAATCTACATGGAAGGAATGACTAATTTAGGTGAGAACTTGA
CAGCTAGATTTCTTTCCTAAGACGTGCGTTTTCAAATAGTTTTCACCACT
GATGAATCTATGAAAGTAACTGATTTCGAATACATAATTTTTATTTTTAC
TGATTGGACCGATGTGCCCTAAATTCCCATTTGAAAATAATCAAATTATG
TTCATAAATTTTCGAGAATTCAAAAGAATCTGATCAAGCATTTGAAAATA
TGTAATTAATATACTTTAACAACAAAGAAATGAAATTATTATTACACGCG
TATAATAGAATTCCCATTGCAGCTAAGGGACCCCTTACAGACATGCTTCA
TTTTGATGAAAAAAGCTTGTATTTATTCTATCTGATGATAGTTCTATCGT
AAGACATACATGTTTATATCTCGTGTCTGTCGTCTGTCGTCCAACTTCAA
CAACAACAACGAATCTTTCATTGGGATAAACGATCAAAATTCATCAAGTC
TCCTCCCGTGATTCTTTCGTGGACAGATGGCAAAAGTCATCTGATTTTTC
TTCCGAAAGTCACCAAGAATTGTTCAGAATTAATCCTTGCATGAAGATTG
GTTTTTGAGTCATCTTTCATAGTAATAAACAGGCTTTTAATTTTTCTCTG
CAGGTCGTACGTCTTGGTAAATTGCCACATTCAGTGGAACCTCAATTATT
GAAACTTGGTCTGATGGTTGAAATGTCAGCTATTCCTGGAACTCCATTGA
CAGTAGATGGTAAAATCATCGACCCTCTTCAAACGACTCGATATGGTGGT
AACTACAGAGGTCGGCAATTCGCAGAATGCACAACTTCACTTTTGGTTGG
TGGTGAGAATTGCAAAGTGTATTTCGATTCTGAATATTTGAACACACCTG
TCACTGGAACTGATTGCTCATTGGTTTGAATCCGTACCATATCACAAACA
ATTAAATAATAATCTCAGTATATAAAAACCACTTTCTGTTNAACTGACTT
ATATATGTTCGTAAATCCGCAATAATCAAATCATGTTAAATATGATATTT
ATTTTCTGTTATGTTAATGAATTTCAATATTTTTGTAAAAATAATATAGT
TACAATCAAATTAATAATTCCAAGTAAATTTAAACTGCAATTCAAACACA
CTGTTAAGTTTTTTCTTCACCAAATTTCCATGTGACAGTTACATTCACCC
CTTTGGTTGTATACTACACCTTTTCGACCATAGCCGCCAATTGCTGCGGG
CATTTTTTGTCCACTTTATCCCACTAAAACCCTCCCAGTTCCGCACCTTA
TAGACAATAGAAAAATGTGTCAAAAAAGGATTGGATCGAGTTTAGGAGAA
TAGTTAAATAATTAAGTGCCACGCACCTGACCGCGCGACTACGGTCGAAA
TGGTGCATTATTCCACGATTATTCTGTTCTTTTAATTATCCGTACGATAT
TTTTTACCAACCCTCTTAAAAACAGAACCATTAAACTTATTCTAGGATAA
GTCACGGACTTTCTATCTCAATAAATGACATTTCAAAAATAACT Coding sequence (CDS) from alignment at scaffold_60:1020402..1023595- >TCONS_00071381 ID=TCONS_00071381|Name=TCONS_00071381|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_60:1020402..1023595- (Clytia hemisphaerica)
GTCGTACGTCTTGGTAAATTGCCACATTCAGTGGAACCTCAATTATTGAA
ACTTGGTCTGATGGTTGAAATGTCAGCTATTCCTGGAACTCCATTGACAG
TAGATGGTAAAATCATCGACCCTCTTCAAACGACTCGATATGGTGGTAAC
TACAGAGGTCGGCAATTCGCAGAATGCACAACTTCACTTTTGGTTGGTGG
TGAGAATTGCAAAGTGTATTTCGATTCTGAATATTTGAACACACCTGTCA
CTGGAACTGATTGCTCATTGGTTTGAGCTAAGACCTCGAACACATGTTTG
GCAAGCATTCGATTTCACATTGACGAAGTTTGGAGAATGGAACGTTTCGA
AGCACCACAATATGCAGAATACAACAAACTTCAAAAATATTTCTTATACG
GAGATGAAGAAGAAGCCTTCATGTCGCATGTCATCACCAAACAACCTGAT
TTTTATCAGGTCGTACGTCTTGGTAAATTGCCACATTCAGTGGAACCTCA
ATTATTGAAACTTGGTCTGATGGTTGAAATGTCAGCTATTCCTGGAACTC
CATTGACAGTAGATGGTAAAATCATCGACCCTCTTCAAACGACTCGATAT
GGTGGTAACTACAGAGGTCGGCAATTCGCAGAATGCACAACTTCACTTTT
GGTTGGTGGTGAGAATTGCAAAGTGTATTTCGATTCTGAATATTTGAACA
CACCTGTCACTGGAACTGATTGCTCATTGGTTTGAGCTAAGACCTCGAAC
ACATGTTTGGCAAGCATTCGATTTCACATTGACGAAGTTTGGAGAATGGA
ACGTTTCGAAGCACCACAATATGCAGAATACAACAAACTTCAAAAATATT
TCTTATACGGAGATGAAGAAGAAGCCTTCATGTCGCATGTCATCACCAAA
CAACCTGATTTTTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071381-exon-scaffold_60-1575043694:1023413..1023595 | TCONS_00071381-exon-scaffold_60-1575043694:1023413..1023595 | Clytia hemisphaerica | exon |
| TCONS_00071381-exon-scaffold_60-1575043694:1020402..1021292 | TCONS_00071381-exon-scaffold_60-1575043694:1020402..1021292 | Clytia hemisphaerica | exon |
| TCONS_00071381-exon-scaffold_60-1510915933:1023413..1023595 | TCONS_00071381-exon-scaffold_60-1510915933:1023413..1023595 | Clytia hemisphaerica | exon |
| TCONS_00071381-exon-scaffold_60-1510915933:1020402..1021292 | TCONS_00071381-exon-scaffold_60-1510915933:1020402..1021292 | Clytia hemisphaerica | exon |
| TCONS_00071381-exon-scaffold_60-1491911889:1023413..1023595 | TCONS_00071381-exon-scaffold_60-1491911889:1023413..1023595 | Clytia hemisphaerica | exon |
| TCONS_00071381-exon-scaffold_60-1491911889:1020402..1021292 | TCONS_00071381-exon-scaffold_60-1491911889:1020402..1021292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1020402..1023595 - |
Blast
The following BLAST results are available for this feature:
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