TCONS_00071370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071370
Unique NameTCONS_00071370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071370 ID=TCONS_00071370|Name=TCONS_00071370|organism=Clytia hemisphaerica|type=transcript|length=641bp
AGATTATAGAGTTgataaaattgcaaaaaatatgaATGAAGTAGCAATAT
GTCCAAAAGAAGAGGCTTCAGTTGTCCAGTGTGTGATTCCCTTTATGAAG
AAAATGAACTAGAAGAACATGTTCAAAGTCACTTCAATGATAACCACAGA
TGGAATGAAAATATGAAGAAGTACAATGTCAGTTTGATGGGTGTGGTTTG
TTGGttgATGTGAAATGTCTTGAAGATCACTTACTTGCACATGAGTTTGG
AGAGAAAGCTGACTCAAGCCCCATTAATGATGATTCTTTGCTGGCAGCTG
CATTGCAGGAAGAAGAAACTAATGACTTGACAAGAAAAAATGATAGATGC
GCAGAAAATGACATTCAGCTTGCAAAAGACTTACAAAAACAAGCAGAGAA
AGAGCTcgaggaaaaagaattcaaaaaattacAGGAAAAATATGGAATGA
CTAGTAATGGTGGTTACACTGAGCAATTCAATGAAAAGATGGGTAAACAA
GTTGGAAGGAATGTTTCAATTGGAGATTACTTTCAGAAGAAAGCAAACAT
GATGTGTTCAATGATGACTGGAGAAGATACTAATGAAACAAGAACTACTG
GAACAATTACAGTATTAACCAATTACTATCAATCAGGAAGN
Run BLAST on NCBI

transcript from alignment at scaffold_60:769317..771325-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071370 ID=TCONS_00071370|Name=TCONS_00071370|organism=Clytia hemisphaerica|type=transcript|length=2009bp|location=Sequence derived from alignment at scaffold_60:769317..771325- (Clytia hemisphaerica)
AGATTATAGAGTTGATAAAATTGCAAAAAATATGAATGAAGTAGCAATAT
GTCCAAAAGAAGAGGCTTCAGTTGTCCAGTGTGTGATTCCCTTTATGAAG
AAAATGAACTAGAAGAACATGTTCAAAGTCACTTCAATGATAACCACAGA
TGGAATGAAGTTGGTAATTGTCCTATACATTTTGTTTTGTTATTTACAAA
ATTTACAAGTTTTACATTTCTAGGACGAAAGATTTGAATGATGAATAATC
CTCTTTAATGTAACTTTTATCTTTGCCCATTAATACCCATTAATTACCCA
TCATTACCCATTAATTTTGGTTACTATTTATAAAATTTTGATTTGCACAA
CCTTTATTAATTCTTGCATACACAGAGATTAAATTAGACAAAAATAAGTT
AAAAATTGCGCTTTAGGTCCACCTCCATGTGTATTACAGCCAAATTGTAC
ATTTTAGAGGTTTTCTTTTAAAACAGTAAAATAATTCACTTGTGTTTTTA
ATCATAGAATATGAAGAAGTACAATGTCAGTTTGATGGGTGTGGTTTGTT
GGGTACAGTATTCATGTTTTTATTAAAGATCTTACTGTATTTGAGATTGA
TTAGATGATTTTGTTTAGGAATATAAATTGAAATGCTAACCTTTCTTTGC
TGATCTTATAGCCAATTTTACTTTGTGATAAATTATTGATGAACTGCTGG
ATAAAGTTACTATATAAGATATAACCTGCAATGTTTTTCAATGGTTTCAA
TTTTACTTGTTTTATTTTTAGTTGATGTGAAATGTCTTGAAGATCACTTA
CTTGCACATGAGTTTGGAGAGAAAGCTGACTCAAGCCCCATTAATGATGG
TAAATTTTCATTACTATAAGACTTGAAGACATTTTAAAGTTAAATACATA
CTGTTTGAAAGATATTCCAAGGTAGATTATTTGAAAGATTGAAAATTTTT
ATAAGAATGAAAGTTGAAGGAGGTTGATGAAAAAAAATTAGGATTTACTA
TCTCAATAAGCTCTTTTCAACCATTTAATTCTTTTAGATTCTTTGCTGGC
AGCTGCATTGCAGGAAGAAGAAACTAATGACTTGACAAGAAAAAATGATA
GATGCGCAGAAAATGACATTCAGCTTGCAAAAGACTTACAAAAACAAGCA
GAGAAAGAGCTCGAGGAAAAAGAATTCAAAAAATTACAGGTTTAGAAAAG
TTATCCAGTGTTGTAACCTGTTGCTACACAACCTGTTGTAACCTGATAAC
AACTGGTCATAATTCTCTTACTGACAAAAAAAATTAACCATCTGAGGAAA
ATAGTCTTCCCGTGTAAAATTCTACAGTAAGAATCTTGTTGTATGTTGGA
AAATCAAAAACTAAATTTTCCTAATTGCCCTATTTCAACTTTGTTTCACT
ACTACCCAGCCCACTCTTTTGGCAATGCATGGACCTTAAGAAAATGAGGT
TGCATCTAAAAAAGTATGAACTTTCAATACATCCTTATCCTTGGAATTCT
TATCCAGTTTGTCTTCTTTTTTCATTTTGCAGGAAAAATATGGAATGACT
AGTAATGGTGGTTACACTGAGCAATTCAATGAAAAGATGGGTAAACAAGT
TGGAAGGAATGTTTCAATTGGAGATTACTTTCAGAAGAAAGCAAACATGA
TGTGTTCAATGATGACTGGAGAAGATACTAATGAAACAAGAACTACTGGT
ATTTTAATGATACCCCACAAAATTTTGTGGTTTTGTCAAAAAACAGCAAA
GTTGAAATCCTTGAAAATTTGTTTTGCAAAAATTTCTTCTCGCAAAAATT
CTTCCCTTGGGTACTTTTTATTTACTACTGACTTTTTTCATTCAATATTT
GGTTTGTTTAAAATCGAACAAAATTCTATCAATTTGAATCACTGGAAGAC
AACCTTTTGGTTTGACCATAGCATAACAAGTGCAGTTATTTTTTTGTCTT
ATGTATCCTCTCTTACAGGAACAATTACAGTATTAACCAATTACTATCAA
TCAGGAAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044350XLOC_044350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071370-exon-scaffold_60-1575043694:771167..771325TCONS_00071370-exon-scaffold_60-1575043694:771167..771325Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1575043694:770774..770818TCONS_00071370-exon-scaffold_60-1575043694:770774..770818Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1575043694:770477..770554TCONS_00071370-exon-scaffold_60-1575043694:770477..770554Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1575043694:770137..770288TCONS_00071370-exon-scaffold_60-1575043694:770137..770288Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1575043694:769628..769793TCONS_00071370-exon-scaffold_60-1575043694:769628..769793Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1575043694:769317..769357TCONS_00071370-exon-scaffold_60-1575043694:769317..769357Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1510915933:771167..771325TCONS_00071370-exon-scaffold_60-1510915933:771167..771325Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1510915933:770774..770818TCONS_00071370-exon-scaffold_60-1510915933:770774..770818Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1510915933:770477..770554TCONS_00071370-exon-scaffold_60-1510915933:770477..770554Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1510915933:770137..770288TCONS_00071370-exon-scaffold_60-1510915933:770137..770288Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1510915933:769628..769793TCONS_00071370-exon-scaffold_60-1510915933:769628..769793Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1510915933:769317..769357TCONS_00071370-exon-scaffold_60-1510915933:769317..769357Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1491911889:771167..771325TCONS_00071370-exon-scaffold_60-1491911889:771167..771325Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1491911889:770774..770818TCONS_00071370-exon-scaffold_60-1491911889:770774..770818Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1491911889:770477..770554TCONS_00071370-exon-scaffold_60-1491911889:770477..770554Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1491911889:770137..770288TCONS_00071370-exon-scaffold_60-1491911889:770137..770288Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1491911889:769628..769793TCONS_00071370-exon-scaffold_60-1491911889:769628..769793Clytia hemisphaericaexon
TCONS_00071370-exon-scaffold_60-1491911889:769317..769357TCONS_00071370-exon-scaffold_60-1491911889:769317..769357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:769317..771325 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0192268	0.000329448	0.00405992	2.17741e-05	0.000202721	1.86206e-05	4.01448e-05	0.000167677	1.72895e-07	2.27295e-05	8.03219e-06	1.30958e-05	1.47294e-09	8.28764e-09	3.70144e-07	9.37086e-09	3.35021e-07	2.76016e-07	6.16397e-08	0.455362	0.0444178	9.26616e-08	0.0188908	0.000418149	4.04278e-07	1.79591e-09	8.78247e-09	1.8921	0.00167757	4.78078e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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