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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071369 ID=TCONS_00071369|Name=TCONS_00071369|organism=Clytia hemisphaerica|type=transcript|length=1603bpRun BLAST on NCBI protein sequence of TCONS_00071369-protein >TCONS_00071369-protein ID=TCONS_00071369-protein|Name=TCONS_00071369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp MSKRRGFSCPVCDSLYEENELEEHVQSHFNDNHRWNEVEYEEVQCQFDGCRun BLAST on NCBI transcript from alignment at scaffold_60:767236..774743- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071369 ID=TCONS_00071369|Name=TCONS_00071369|organism=Clytia hemisphaerica|type=transcript|length=7508bp|location=Sequence derived from alignment at scaffold_60:767236..774743- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:767236..774743- >TCONS_00071369 ID=TCONS_00071369|Name=TCONS_00071369|organism=Clytia hemisphaerica|type=CDS|length=13200bp|location=Sequence derived from alignment at scaffold_60:767236..774743- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00071369 vs. Swiss-Prot (Human)
Match: ZUFSP (Zinc finger with UFM1-specific peptidase domain protein OS=Homo sapiens GN=ZUFSP PE=1 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 1.614e-66 Identity = 162/452 (35.84%), Postives = 244/452 (53.98%), Query Frame = 3
Query: 201 CPVCDSLYEENE-LEEHVQS-HFNDNHRWNEVEYEEV-QCQFDG--CGLL-VDVKCLEDHLLAH----EFGEKADSSPINDDSLLAAALQEEETNDLTRKNDRCAENDIQLAKDXXXXXXXXXXXXXXXXXXXXYGMTSNGGYTEQFNEKMGKQVGR-NVSIGDYFQKKANMMCSMMTGEDTNETRTTGTITVLTNYYQSGSIKGISQVHLSSDTNHYAADVSDNGWGCGYRNTQMXXXXXXXNPLYKDHIEQKLGMLTVPSVPKIQSCIEEAWKEGFDQSGKEQLGGKLSKTKKWIGTTEVASLLRWMNIRARIVDFHKSQNNL--HPLMFQWVKDYFTQNSD-------EQIPPLYIQHEGHSRTIIGLEEYSGSAENQLLIFDPSNHKMQSIKSIKPPYTKIQTKALRKSLHQMKYKQFQLVFIDGVYKSE---CDRNAGKILSSIRIP 1487
CP C + E +E +E HV++ H N ++ E+ Q +D CGL+ + L++H+ H F + D + D LA LQ+EE D R+++ + + K LQ +YG+ ++GGY +Q M +V R + ++ ++KA+MM S+ G D +T+T+G I L YYQ+ + + +V LSS +H+ + + D GWGCGYRN QMLLSSLL N Y D ++ GML +P +PKIQS IE+AWKEGFD G QL +L TK WIG EV LL + ++ IVDFHKS L HP +F+W+ +Y++ + PP+Y+QH+GHSRT+IG+EE LLI DP + K +K K LRKS+ +K+KQ+Q++ ++G E R A ++ ++ +IP
Sbjct: 156 CPFCGKIEEHSEDMETHVKTKHAN----LLDIPLEDCDQPLYDCPMCGLICTNYHILQEHVDLHLEENSFQQGMDRVQCSGDLQLAHQLQQEE--DRKRRSEESRQEIEEFQK-----------------LQRQYGLDNSGGYKQQQLRNMEIEVNRGRMPPSEFHRRKADMMESLALGFDDGKTKTSGIIEALHRYYQNAATD-VRRVWLSSVVDHFHSSLGDKGWGCGYRNFQMLLSSLLQNDAYNDCLK---GML-IPCIPKIQSMIEDAWKEGFDPQGASQLNNRLQGTKAWIGACEVYILLTSLRVKCHIVDFHKSTGPLGTHPRLFEWILNYYSSEGEGSPKVVCTSKPPIYLQHQGHSRTVIGIEEKKNRTLC-LLILDPGCPSREMQKLLKQDIEASSLKQLRKSMGNLKHKQYQILAVEGALSLEEKLARRQASQVFTAEKIP 578 The following BLAST results are available for this feature:
BLAST of TCONS_00071369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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