TCONS_00071366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071366
Unique NameTCONS_00071366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071366 ID=TCONS_00071366|Name=TCONS_00071366|organism=Clytia hemisphaerica|type=transcript|length=1381bp
ACGACCAAAATCACGAGAAGAAAGAATCGAACCATTCAAATAACGCTTCA
CCATCAACGTTGGTTAATCACCATACGGAGATAGATGAAACAGATACTGG
TAGTGAAGCTTTAGATTCCCAACAACATCAAATGAACCAAGAAGACATTG
AAGATCAAACACCAACGAACagtaaaattgaagaaaaagaagaagacttA
GATGAAGATACAGAAGAAGAAATAGAAGTCCTTGAAGACATTATTCATCA
TAACATCTTTCTGAAGAGTAGCGCGGAAAGTTCGTTTGCACCCTACACAG
CACACTGTCTTCTACTGAGCAATGCGACAGTGCTGGTCCTTCTTTCACAA
CATCGACATATGTTCTTGGCTTTCTACATTCAAAACATGTTACGATGTTT
GAACCTGATCCTCGTCATcaccaaacaaaaacaattgtCATACCGCATGA
AACTGTTTGATGATTGTGAAAAATATCGACAAAAAATTCAACTCTTCTTC
TTACGGACAAGCGGTTATCAAACGAATCGAATGGGAAATTACTACAAAGG
TTTTGAGCAGAAATGGAACGCTACACAAGATGCTGGGCTTTTAGACTTTA
TCAACAGTGATACTCCTTCTGTTGAAATGAATGCAAGATTAGAACAGAAC
CTTGTAAACCTGATCAAAAGCACCAAAGCACTTTTCACGCAATCCTTCAT
CTCCAATGACGGTCAAAGCTACATGGATGAAGGTCAAACGCGACTATTCC
GTTCACTACGAGACATCGCAGTGGAGCGATTGAGCCATTACAATCTCTTC
TTGAATGTAAGAGGACAACAGAATGTCTCGATGACTGCTTACCATAATGA
CTTCCCTGGCTTGGTTCATTTCATATACACGAACAGAACCACGGATCAGC
TAGTGGCACCTACCGTCAACGTCAATATTGATTCGAACAATTCTTTATAC
AATCTCATCAAGCAACGAATATGGGACTATTGGCAATATTCTGAAACCAT
GCTGTCTAAAGGTTATACATCATTCATGCTGAGAGACGGCGACTTTTGTT
ATTCTTACTTTATATGGTTCGAAGATTCGTTAAGGAAACCAATGTTGTCA
CAAAAATCCATGAAAGGCTTGAACGAAAATAAACCGACTGGTATTTTGTC
TGGAAATTATTACAAGGACCTGATGTGTCACCTCTTCCCGTCAGAACCGA
AAGGTAGCATCAACTGTTACGAACTCTTTTGCGTCCACGTTGGATTAGTA
AGTAACCAATACGTCGCAAGTTCCTGTAAGAAGTTATCTCGCAAATTGGA
AGGTTCCGGTGAGATCGTTGTTTTatgatattattatattatttttgtag
ttttggattctggaaaatttgaaaatgtcag
Run BLAST on NCBI

protein sequence of TCONS_00071366-protein

>TCONS_00071366-protein ID=TCONS_00071366-protein|Name=TCONS_00071366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
DQNHEKKESNHSNNASPSTLVNHHTEIDETDTGSEALDSQQHQMNQEDIE
DQTPTNSKIEEKEEDLDEDTEEEIEVLEDIIHHNIFLKSSAESSFAPYTA
HCLLLSNATVLVLLSQHRHMFLAFYIQNMLRCLNLILVITKQKQLSYRMK
LFDDCEKYRQKIQLFFLRTSGYQTNRMGNYYKGFEQKWNATQDAGLLDFI
NSDTPSVEMNARLEQNLVNLIKSTKALFTQSFISNDGQSYMDEGQTRLFR
SLRDIAVERLSHYNLFLNVRGQQNVSMTAYHNDFPGLVHFIYTNRTTDQL
VAPTVNVNIDSNNSLYNLIKQRIWDYWQYSETMLSKGYTSFMLRDGDFCY
SYFIWFEDSLRKPMLSQKSMKGLNENKPTGILSGNYYKDLMCHLFPSEPK
GSINCYELFCVHVGLVSNQYVASSCKKLSRKLEGSGEIVVL
Run BLAST on NCBI

transcript from alignment at scaffold_60:755600..764102-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071366 ID=TCONS_00071366|Name=TCONS_00071366|organism=Clytia hemisphaerica|type=transcript|length=8503bp|location=Sequence derived from alignment at scaffold_60:755600..764102- (Clytia hemisphaerica)
ACGACCAAAATCACGAGAAGAAAGAATCGAACCATTCAAATAACGCTTCA
CCATCAACGTTGGTTAATCACCATACGGAGATAGATGAAACAGATACTGG
TAGTGAAGCTTTAGATTCCCAACAACATCAAATGAACCAAGAAGACATTG
AAGATCAAACACCAACGAACAGTAAAATTGAAGAAAAAGAAGAAGACTTA
GATGAAGATACAGAAGAAGAAATAGAAGTCCTTGAAGACATTATTCATCA
TAACATCTTTCTGAAGAGTAGCGCGGAAAGTTCGTTTGCACCCTACACAG
CACACTGTCTTCTACTGAGCAATGCGACAGTGCTGGTCCTTCTTTCACAA
GTATGTTCTACCTTTCTCAATCAAGAAATAGTGAAGCCTTGTGCTTTCAA
CCTGGCGTTTGTGTGAGAACCATGTGGGTCACGCGTTTTGGATGGGAAAA
GACAACTCCCTTTGCGAGTTAAGATTTTGCTCTTGCCCTTCAATAGTTTT
TCACCTTTCAACAAGATGAATATATCACTTATTACGTGTTTCACAAGACA
GTTTTTTTATCACATTATTTGTCAAAACAATGGCCATTAATATTGTATTT
TAGGGGTCTCAACTTTTCGATTTGAAGGAGGTCTTAACCCTAATTAAGCT
TTCTTAAAAATGTGCTTCTCTGATTCTTCCTTCAAAAGACCTCAAAATTT
AGTTCCTTTTTAACCATTTCTTGAAGGTTTAGCCTCAGATTGTTTGTTTA
ACTTCATGATTACCTCGGACTTCCCTTTATTTTATGGTGACGCCTGATAG
ATGAGAATACGATTTCTACATTTTCCATTGTTATTTACTTTTCTTATTTA
GTAGTTGAACTTTAAAATTAATAAACACTATAATAAACCCACCCCTTTTT
GCAGGCGAATGTTGTTTATAAGAACTTGACCTCAGCTAATTTTTATTCCC
TCGAGATGTGTCTTCATATTTTTAGGATGGAAAGAATGATAGGTTTCAAA
TTCTTGGATTCCTTTCAATTGATATCACTTGGTTTTTTATTTTGTTTGTC
TACGATGCAAATTTTTTTTCCGTAGACGGGCGGAAATATCTTTAATGGTC
GGAAATATCATAGCGTAATGGTTGGAAATATCATTTGATGGTCGGAAATA
TCTTTTGATGGTCGGAAATATACAAAACTCTGAAAATTTGAAAATTTCAT
GGTCGGAAATATCATTTGATGGTCGGGAATATCATTTGATGGTCGGAAAT
ATCTTTTGATGGTCGGAAATATACAAAACTCTGAAAATTTGAAAATTTCA
TGGTCGGAAATATCATTTGATGGTCGGGAATATCATTTGATGGTCGGAAA
TATCTTTTGATGGTCGGAAATATCATTTGATGGTCGGAAATATCATTTGG
TGGTCGGGAATATCATTTGATGGTCGGAAATATCTTTTGATGGTCGGAAA
TATCATTTGATGGTCGGAAATATCATTTGATGGTCGGAAATATCAAAAAC
TCTAAAAATTTGAAAATTTTTCTTTTAAAAATGCTTCATCAGCAAAAAAA
TGTAAACAAAGAACTTTGGAATTCTGGACTTAACATAACGAATTTTTTCC
AAACAACTTTATTGTAGATCCTTTCGGAGAGGGGGAGAGGCAGAAGGGCA
CTCGATCTGAAAACGACTATACGTTCGGTGGAAAATTTGGCTTCCAAAAT
CGAACCCTTACAGTGCATCCAGCTGGCAGTAGATACAGAGAAAATTTGGC
CAAAAAATAACCCTTACAGTGGGGGCTAGAGGAGGAAAGGATATAAAAAA
GACAAGAAAGAACGAAGAGTCGTGTTTGAATAAAAAGGTCCATACCACTT
TCTCTCGAAAAAGAAACAGAACATAGTGTCCCAAAAACTTAAAAAAATAA
AAAAACTACTCTCTTGTCTGGCACACACAACAAGTTGGCCACACCACACA
ACCTTTGCTACCATCTTTGTTTACATTTTTTTGCTGATGAAGCATTTTTA
AAAGCGCGGGATATTTCTGACCATTAAATTTTCAAATTTTCAGAGTTTTG
GATATTTCCGACCATCAAAAGATATTTCCGACCATCAGATGATATTTCCG
ACCATTACGCTATGATATTTCCGACCATTAAAGATATTTCCGCCCGTCTA
CGGAAAAAAAATTTGCGTTTACGACTACAGTATTGTATTTCTTCTTTCCA
TTTCTAGCATCGACATATGTTCTTGGCTTTCTACATTCAAAACATGTTAC
GATGTTTGAACCTGATCCTCGTCATCACCAAACAAAAACAATTGTCATAC
CGCATGAAACTGTTTGATGATTGTGAAAAATATCGACAAAAAATTCAACT
CTTCTTCTTACGGACAAGCGGTGTAAGTTGCCCAAGATTCCCTAACGATA
CAACATTCATCGTTTTTTATACGTCCAAGGTTTTTTTTTTCAAATCTCAA
GTTTTTGCAAATGGGTGTCATGATACGCACATGCAAATGGCGCAGGGGAG
AGTGCTCTATCGGGCAAAGTTTTCACTAAATTTTCACTTGTCAAAACAAG
TCTTCTTTCCAAAGCTAAAAATGTGAATGTGATTGGGCTATTCCAGAAAT
ACTCTCTACCCCCTATATTGAGGAGGTGTGACGTCCAGAGTGGTCTGGAA
AATAGAAAAATCCAGGGTGGTCTGTTTTTTTTTTGGATGAAAAATCCAGG
GTGGTCAGTAATATCAGATTGAAAATGGTCAGTATAACGAGGTCGAAAAT
CCAGGGTGGTTCAAAGAAATGGGAGAAAAAAATCCAGGGGGGTCACCTTT
TTAAAAAAAGATCTCCTCAACATAGGGGGTACAAATTTTTTCTGGAATAG
CCTATTCCAGGGCACTCATCCAGATTTCTGAAATTAGTATTTTGACTACC
ATTTTTTAAGTCTTTCCCCCCTCATGTCAATTTCATAAACAATTTGATAT
CCGTGTTAGAACTGCATTTTAAAAGACTCAACTCCTTTCCCTTCACTTTT
AGTATCAAACGAATCGAATGGGAAATTACTACAAAGGTTTTGAGCAGAAA
TGGAACGCTACACAAGATGCTGGGCTTTTAGACTTTATCAACAGTGATAC
TCCTTCTGTTGAAATGAATGCAAGGTATGTGGACTCAAAAACAAATACTT
TTCTTAAAAATCTATTAAGAACTGTTATCCTCGGAAAAGGTGTTCTCCAG
CCAAATGAATCCATGGTATGCCCTGGTCAAATGACAATTCAAGAAAAAAT
CTACAAATTGTCATATAGTTCATCTAGAGCTTGTTAGAATTTTAATTGTT
GGCACTCACACACAAAGCACTAAAACCAAGCTTTAATACACATATTGAAA
GTAACTTCACAAGCATAAGAGTTAAACCAAGGTGGAAGATGTCAAATTCC
AATATCTGTGAGCGCGTTATTGGAATAAGTTTCACGTGACCATTAAAACA
AAAGATTAGCAAGATTCTGATCTAAGACTGTATTTCAAGGCCCAAATAGC
TGATGTCTCCTTCTTTTGTTTTGTTCCTTCAGATTAGAACAGAACCTTGT
AAACCTGATCAAAAGCACCAAAGCACTTTTCACGCAATCCTTCATCTCCA
ATGACGGTCAAAGCTACATGGATGAAGGTCAAACGCGACTATTCCGTTCA
CTACGAGACATCGCAGTGGAGCGATTGAGCCATTACAATCTCTTCTTGAA
TGTAAGAGGACAACAGAATGTCTCGATGACTGCTTACCATAATGACTTCC
CTGGCTTGGTTCATTTCATATACACGAACAGGTTTGTCGGTTATTTGGTC
TTATTAAGTGGCACTGGCATCATACGAAATCGCTCAAACCTCGGTCTGGA
CCAAGGAGTCCCGCGACCCATGCCGTCCTATTTTTTCCTTAGTTGGTGCG
TGTACGCGCACTTGAAATCAGAAATATTTGAAAATTTAAATCCATGGAGT
GATGTCACTTAATGGGTGACGTATTAAGTAAGGAAGTCCAAAAATCTGTT
AAGTTTTTTTCAGTAGACAAAATAACACAAATAATAACAATACCGAAATT
GTCTGAAATTCATCAAACAAGTTCCAGTGTTACAAAAAAAGATGTTATTT
CCTTGGAAATATTGACCACCCTCCCCCTCTATTTATCATCCATTATGAAA
TTATTTAGATAACCAATTAACTAATTATCAGGGCTATCCCTTATAGACCC
CTATAATAAAACATTTATTTTGTCTAATAGGGATTTTAACCTTTCACAAT
GATTTTAGTGTTGCAACTTCTCACTTTTAACAGACAGATGTAACTAACAT
GAAAGTGGGCTAGCACTTTGTCTTTCCAACGGGCTTTTTTCTAAATCGAA
AAAAAGTGTGGGAAATTTTTCTCGTGACAGAGTATGGTATAATATGACAC
TTCTCATAGATTTATAATGAATTTTGAATGTAAAGAAGGCGTAACATAGA
GTTTTCATAAAGTGTTTCATTATGTTTGAAAACCTCTTAAACTAGTCATA
GCTTTCACTAAATGCCCCCACAGAAAGGTCATGTCANTAGATTGTAGGCA
AAATATATAGCGGTGCGGTGAATAAATCAACAAGGTAACCAATCAGAAAT
AGCTTGTTTATTTTTCATTGGCTGCTATATATTTCAACAACTCTATATTG
CTACTTTGCCTAATAAACAATAGTAAGATGATAAGATGATACTGCGTATT
AAATCCATCAAAAAGTTCTGCGCCATCTGAAATAGACCAATCCTAGTTAA
GGCCCGGGTTCCACTTGCGTACGCTGTGATTGCATTCAAAAGAAAAATAA
AGGAATGTCATTGTGGTCCATTCAGGCGTACAGTCGAAAAGTTGAAATGT
GCCTAATTTTTTTTCAAGTGTATAGTACTTTTTCATGATGCAATCTTTTC
TCCAAGCTGCAAGGATTGAAGCCATTAAGATATGATTGCAGCGCAGACAA
TGAAGAGACGGGCCTTCAGGAAACTAGACTTTTTGAGTTTTTAGCTATAT
ACTCTCACTTTATGGTGTTCCTGTATGACTGTCTGTGTGCCTACTCTAAC
CACCGTTAAATGCCATAACTTGGAAAGCTAGAATTGGAGCTATTTCAACA
AACCCCTAGAGCGTAAGTTATTTAGGCTATGGGGCCATCCATACACATAC
AGTACGTACGCAATGAAGGGGGAGAGGGGGGTTAGCAAAAGCGTACATCT
ATTGTTTAAATGACATCATTTCTATTGTTCTCTGCGTACAAGGGGGGAAG
GGGTATCAAATTTTTGGAAAATCTTTGCGTACGTACTATTATATGAATGA
ACTATATGGACGGCCTCTATCACAACTGCATGAAAAAGTGGAACGTGCGC
ATGCAAAGTTAAACGAATGTAAATGAACTTTTTCAGGCTTTTGAAATAGA
TTTACCACACAAACAGTGAAAACACTCTAAGTGAGGTAAATCTATTTTGA
AGACCAAAAAAAAAATATTGATTGACATTCAACNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAAACAATAAAGCT
AGTTATTAATATAATAACAGACAAAGATAAATTACAGTTTGAACAAAAAT
ATCAAATGTACATTTGAAAACTTGAGCAAACTTTTTTAAAGATTCCAGAA
AAAGAATTGAAATCATTGCTGAAATAAACTTCTGACTAAATTACAGTATT
TAGTATACAGTTTGAAAGACAAGAAACAAAATTTGACATACAAAACACTT
TTTCTAGTCAACGAATCAGCTCATCATCATAACCAGTCTGCCATTTTGTT
TGTTTTGATTTGCACAAGTAATATTGTAATTCGTGTTANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCACAAAAACAAAAACAATTCGCAAAAAATCGAGATTCC
AGTCCAATATATTGCGTGAAGCTATGAGTGCCTCCTCAGTCGCTGCGCTC
CTTGCGGGGGCAATTATTTCTGATGGCGTCTCTCTATTGAAATTTGATGA
CTTGATGAGCGGATTTAGGGTGATAAAGATCAAAATCCTTTGGTCTTTTT
ACTGAGAGCAAAATTTTGTTTTTCGAATTCAACTTTTTCAAACGCTCTAG
AGACATTGAGAAGCTAGGAGCTCTTCTGAAATGCTTTAAGACTGGGACCC
GTTCAAATCTTCCAGTGGTTGTTTTAAAATGGATATGGAAATTTATTTTC
CTCATTGGTTTGATGAAATTCAGATGGTGGTTTCGGTTTAAACATTTTCA
ACTTTTACTTATTAACAATTCACAGACAACTTCCAATTTGTAAGTTTCAA
AGATTCGAAAGGATTTTTAGTTATAAGTCCTATATCTGAGCTGTCTATAC
TTCTCATTAATCTAAAAATATCTCGGAACTGCTTTATTTAACTTGTTCGA
TCCCTCAGAGCACCTGAAAGTCTTCCTTCATACAGATATTATCTATCTTC
ACAGAGTTAGCTGGTCTTCAACGAGTTCTGCTTGGCGAACCTGAAATGTT
TATCTAAGTGTACCGTTAACGAGCCTATTGGGAGCACTTTATAGTTCTTT
TTAGTTCTTGAGAGTCGAAATTTTTTGTGGTTTTTACTTTCGCTATAATA
TTTGGAATATTTTAAGCATTGAGCTTCTGTGCCACCTGGATTTCTCATCT
GAGTATCCATAATGGTGGATTTTCAGCGAATGACCCTTCTGGGACCCCCT
CAGCAAAAAGTGAATTTTTTTCGTGCCAAACATGGGCTGGTCATATATCA
ATCGATCTGAAATGTCTTACTGATCATTTTTGAGATACAAACTTGGTTCT
GCAAAGTTTGCTTTCTCAAGATATAGAGCATTTTCGTTTTATTAAATATG
ACTTTTCTTCAATATCCATTCTATTTACAGAACCACGGATCAGCTAGTGG
CACCTACCGTCAACGTCAATATTGATTCGAACAATTCTTTATACAATCTC
ATCAAGCAACGAATATGGGACTATTGGCAATATTCTGAAACCATGCTGTC
TAAAGGTTATACATCATTCATGCTGAGAGACGGCGACTTTTGTTATTCTT
ACTTTATATGGTTCGAAGATTCGTTAAGGAAACCAATGTTGTCACAAAAA
TCCATGAAAGGCTTGAACGAAAATAAACCGACTGGTATTTTGTCTGGAAA
TTATTACAAGTAAGATTTTACATTTCTCACAATTATTTTTATTTTGAGCC
CAGCATGGGGCCTTTTATTAGCATGTCGCTGTCCGTGGTACTGAATTGTC
CGTTTTTGAAGAAGCAGCGCTTTGTCAATTCAAGTTCATTTTTGAAGAAA
TGGCGTCTTCTGATGCGTGTATACATTGCAAACAAACGACAATTGCGACT
CTTGCTATGTCGCTGGACTTTAATGACGCTTCGACTTCTCGTTTGTTATT
TGATATGCCACTCACTCATTTTTATTGTTTATGTATCGAAGATCAAGCTA
AACCTCTGCCTTAGATGTCCTTCATATCGCAAAAGTAAAAGAAAAAGCCC
TTCATTAGTATTATTCCTCCATTTTTTTCACCATCAGGGACCTGATGTGT
CACCTCTTCCCGTCAGAACCGAAAGGTAGCATCAACTGTTACGAACTCTT
TTGCGTCCACGTTGGATTAGTAAGTAACCAATACGTCGCAAGTTCCTGTA
AGAAGTTATCTCGCAAATTGGAAGGTTCCGGTGAGATCGTTGTTTTATGA
TATTATTATATTATTTTTGTAGTTTTGGATTCTGGAAAATTTGAAAATGT
CAG

Coding sequence (CDS) from alignment at scaffold_60:755600..764102-

>TCONS_00071366 ID=TCONS_00071366|Name=TCONS_00071366|organism=Clytia hemisphaerica|type=CDS|length=7956bp|location=Sequence derived from alignment at scaffold_60:755600..764102- (Clytia hemisphaerica)
GGACCTGATGTGTCACCTCTTCCCGTCAGAACCGAAAGGTAGCATCAACT
GTTACGAACTCTTTTGCGTCCACGTTGGATTAGTAAGTAACCAATACGTC
GCAAGTTCCTGTAAGAAGTTATCTCGCAAATTGGAAGGTTCCGGTGAGAT
CGTTGTTTTATGAAACCACGGATCAGCTAGTGGCACCTACCGTCAACGTC
AATATTGATTCGAACAATTCTTTATACAATCTCATCAAGCAACGAATATG
GGACTATTGGCAATATTCTGAAACCATGCTGTCTAAAGGTTATACATCAT
TCATGCTGAGAGACGGCGACTTTTGTTATTCTTACTTTATATGGTTCGAA
GATTCGTTAAGGAAACCAATGTTGTCACAAAAATCCATGAAAGGCTTGAA
CGAAAATAAACCGACTGGTATTTTGTCTGGAAATTATTACAAATTAGAAC
AGAACCTTGTAAACCTGATCAAAAGCACCAAAGCACTTTTCACGCAATCC
TTCATCTCCAATGACGGTCAAAGCTACATGGATGAAGGTCAAACGCGACT
ATTCCGTTCACTACGAGACATCGCAGTGGAGCGATTGAGCCATTACAATC
TCTTCTTGAATGTAAGAGGACAACAGAATGTCTCGATGACTGCTTACCAT
AATGACTTCCCTGGCTTGGTTCATTTCATATACACGAACAGTATCAAACG
AATCGAATGGGAAATTACTACAAAGGTTTTGAGCAGAAATGGAACGCTAC
ACAAGATGCTGGGCTTTTAGACTTTATCAACAGTGATACTCCTTCTGTTG
AAATGAATGCAAGCATCGACATATGTTCTTGGCTTTCTACATTCAAAACA
TGTTACGATGTTTGAACCTGATCCTCGTCATCACCAAACAAAAACAATTG
TCATACCGCATGAAACTGTTTGATGATTGTGAAAAATATCGACAAAAAAT
TCAACTCTTCTTCTTACGGACAAGCGGTGACCAAAATCACGAGAAGAAAG
AATCGAACCATTCAAATAACGCTTCACCATCAACGTTGGTTAATCACCAT
ACGGAGATAGATGAAACAGATACTGGTAGTGAAGCTTTAGATTCCCAACA
ACATCAAATGAACCAAGAAGACATTGAAGATCAAACACCAACGAACAGTA
AAATTGAAGAAAAAGAAGAAGACTTAGATGAAGATACAGAAGAAGAAATA
GAAGTCCTTGAAGACATTATTCATCATAACATCTTTCTGAAGAGTAGCGC
GGAAAGTTCGTTTGCACCCTACACAGCACACTGTCTTCTACTGAGCAATG
CGACAGTGCTGGTCCTTCTTTCACAAGGACCTGATGTGTCACCTCTTCCC
GTCAGAACCGAAAGGTAGCATCAACTGTTACGAACTCTTTTGCGTCCACG
TTGGATTAGTAAGTAACCAATACGTCGCAAGTTCCTGTAAGAAGTTATCT
CGCAAATTGGAAGGTTCCGGTGAGATCGTTGTTTTATGAAACCACGGATC
AGCTAGTGGCACCTACCGTCAACGTCAATATTGATTCGAACAATTCTTTA
TACAATCTCATCAAGCAACGAATATGGGACTATTGGCAATATTCTGAAAC
CATGCTGTCTAAAGGTTATACATCATTCATGCTGAGAGACGGCGACTTTT
GTTATTCTTACTTTATATGGTTCGAAGATTCGTTAAGGAAACCAATGTTG
TCACAAAAATCCATGAAAGGCTTGAACGAAAATAAACCGACTGGTATTTT
GTCTGGAAATTATTACAAATTAGAACAGAACCTTGTAAACCTGATCAAAA
GCACCAAAGCACTTTTCACGCAATCCTTCATCTCCAATGACGGTCAAAGC
TACATGGATGAAGGTCAAACGCGACTATTCCGTTCACTACGAGACATCGC
AGTGGAGCGATTGAGCCATTACAATCTCTTCTTGAATGTAAGAGGACAAC
AGAATGTCTCGATGACTGCTTACCATAATGACTTCCCTGGCTTGGTTCAT
TTCATATACACGAACAGTATCAAACGAATCGAATGGGAAATTACTACAAA
GGTTTTGAGCAGAAATGGAACGCTACACAAGATGCTGGGCTTTTAGACTT
TATCAACAGTGATACTCCTTCTGTTGAAATGAATGCAAGCATCGACATAT
GTTCTTGGCTTTCTACATTCAAAACATGTTACGATGTTTGAACCTGATCC
TCGTCATCACCAAACAAAAACAATTGTCATACCGCATGAAACTGTTTGAT
GATTGTGAAAAATATCGACAAAAAATTCAACTCTTCTTCTTACGGACAAG
CGGTGACCAAAATCACGAGAAGAAAGAATCGAACCATTCAAATAACGCTT
CACCATCAACGTTGGTTAATCACCATACGGAGATAGATGAAACAGATACT
GGTAGTGAAGCTTTAGATTCCCAACAACATCAAATGAACCAAGAAGACAT
TGAAGATCAAACACCAACGAACAGTAAAATTGAAGAAAAAGAAGAAGACT
TAGATGAAGATACAGAAGAAGAAATAGAAGTCCTTGAAGACATTATTCAT
CATAACATCTTTCTGAAGAGTAGCGCGGAAAGTTCGTTTGCACCCTACAC
AGCACACTGTCTTCTACTGAGCAATGCGACAGTGCTGGTCCTTCTTTCAC
AAGGACCTGATGTGTCACCTCTTCCCGTCAGAACCGAAAGGTAGCATCAA
CTGTTACGAACTCTTTTGCGTCCACGTTGGATTAGTAAGTAACCAATACG
TCGCAAGTTCCTGTAAGAAGTTATCTCGCAAATTGGAAGGTTCCGGTGAG
ATCGTTGTTTTATGAAACCACGGATCAGCTAGTGGCACCTACCGTCAACG
TCAATATTGATTCGAACAATTCTTTATACAATCTCATCAAGCAACGAATA
TGGGACTATTGGCAATATTCTGAAACCATGCTGTCTAAAGGTTATACATC
ATTCATGCTGAGAGACGGCGACTTTTGTTATTCTTACTTTATATGGTTCG
AAGATTCGTTAAGGAAACCAATGTTGTCACAAAAATCCATGAAAGGCTTG
AACGAAAATAAACCGACTGGTATTTTGTCTGGAAATTATTACAAATTAGA
ACAGAACCTTGTAAACCTGATCAAAAGCACCAAAGCACTTTTCACGCAAT
CCTTCATCTCCAATGACGGTCAAAGCTACATGGATGAAGGTCAAACGCGA
CTATTCCGTTCACTACGAGACATCGCAGTGGAGCGATTGAGCCATTACAA
TCTCTTCTTGAATGTAAGAGGACAACAGAATGTCTCGATGACTGCTTACC
ATAATGACTTCCCTGGCTTGGTTCATTTCATATACACGAACAGTATCAAA
CGAATCGAATGGGAAATTACTACAAAGGTTTTGAGCAGAAATGGAACGCT
ACACAAGATGCTGGGCTTTTAGACTTTATCAACAGTGATACTCCTTCTGT
TGAAATGAATGCAAGCATCGACATATGTTCTTGGCTTTCTACATTCAAAA
CATGTTACGATGTTTGAACCTGATCCTCGTCATCACCAAACAAAAACAAT
TGTCATACCGCATGAAACTGTTTGATGATTGTGAAAAATATCGACAAAAA
ATTCAACTCTTCTTCTTACGGACAAGCGGTGACCAAAATCACGAGAAGAA
AGAATCGAACCATTCAAATAACGCTTCACCATCAACGTTGGTTAATCACC
ATACGGAGATAGATGAAACAGATACTGGTAGTGAAGCTTTAGATTCCCAA
CAACATCAAATGAACCAAGAAGACATTGAAGATCAAACACCAACGAACAG
TAAAATTGAAGAAAAAGAAGAAGACTTAGATGAAGATACAGAAGAAGAAA
TAGAAGTCCTTGAAGACATTATTCATCATAACATCTTTCTGAAGAGTAGC
GCGGAAAGTTCGTTTGCACCCTACACAGCACACTGTCTTCTACTGAGCAA
TGCGACAGTGCTGGTCCTTCTTTCACAAGGACCTGATGTGTCACCTCTTC
CCGTCAGAACCGAAAGGTAGCATCAACTGTTACGAACTCTTTTGCGTCCA
CGTTGGATTAGTAAGTAACCAATACGTCGCAAGTTCCTGTAAGAAGTTAT
CTCGCAAATTGGAAGGTTCCGGTGAGATCGTTGTTTTATGAAACCACGGA
TCAGCTAGTGGCACCTACCGTCAACGTCAATATTGATTCGAACAATTCTT
TATACAATCTCATCAAGCAACGAATATGGGACTATTGGCAATATTCTGAA
ACCATGCTGTCTAAAGGTTATACATCATTCATGCTGAGAGACGGCGACTT
TTGTTATTCTTACTTTATATGGTTCGAAGATTCGTTAAGGAAACCAATGT
TGTCACAAAAATCCATGAAAGGCTTGAACGAAAATAAACCGACTGGTATT
TTGTCTGGAAATTATTACAAATTAGAACAGAACCTTGTAAACCTGATCAA
AAGCACCAAAGCACTTTTCACGCAATCCTTCATCTCCAATGACGGTCAAA
GCTACATGGATGAAGGTCAAACGCGACTATTCCGTTCACTACGAGACATC
GCAGTGGAGCGATTGAGCCATTACAATCTCTTCTTGAATGTAAGAGGACA
ACAGAATGTCTCGATGACTGCTTACCATAATGACTTCCCTGGCTTGGTTC
ATTTCATATACACGAACAGTATCAAACGAATCGAATGGGAAATTACTACA
AAGGTTTTGAGCAGAAATGGAACGCTACACAAGATGCTGGGCTTTTAGAC
TTTATCAACAGTGATACTCCTTCTGTTGAAATGAATGCAAGCATCGACAT
ATGTTCTTGGCTTTCTACATTCAAAACATGTTACGATGTTTGAACCTGAT
CCTCGTCATCACCAAACAAAAACAATTGTCATACCGCATGAAACTGTTTG
ATGATTGTGAAAAATATCGACAAAAAATTCAACTCTTCTTCTTACGGACA
AGCGGTGACCAAAATCACGAGAAGAAAGAATCGAACCATTCAAATAACGC
TTCACCATCAACGTTGGTTAATCACCATACGGAGATAGATGAAACAGATA
CTGGTAGTGAAGCTTTAGATTCCCAACAACATCAAATGAACCAAGAAGAC
ATTGAAGATCAAACACCAACGAACAGTAAAATTGAAGAAAAAGAAGAAGA
CTTAGATGAAGATACAGAAGAAGAAATAGAAGTCCTTGAAGACATTATTC
ATCATAACATCTTTCTGAAGAGTAGCGCGGAAAGTTCGTTTGCACCCTAC
ACAGCACACTGTCTTCTACTGAGCAATGCGACAGTGCTGGTCCTTCTTTC
ACAAGGACCTGATGTGTCACCTCTTCCCGTCAGAACCGAAAGGTAGCATC
AACTGTTACGAACTCTTTTGCGTCCACGTTGGATTAGTAAGTAACCAATA
CGTCGCAAGTTCCTGTAAGAAGTTATCTCGCAAATTGGAAGGTTCCGGTG
AGATCGTTGTTTTATGAAACCACGGATCAGCTAGTGGCACCTACCGTCAA
CGTCAATATTGATTCGAACAATTCTTTATACAATCTCATCAAGCAACGAA
TATGGGACTATTGGCAATATTCTGAAACCATGCTGTCTAAAGGTTATACA
TCATTCATGCTGAGAGACGGCGACTTTTGTTATTCTTACTTTATATGGTT
CGAAGATTCGTTAAGGAAACCAATGTTGTCACAAAAATCCATGAAAGGCT
TGAACGAAAATAAACCGACTGGTATTTTGTCTGGAAATTATTACAAATTA
GAACAGAACCTTGTAAACCTGATCAAAAGCACCAAAGCACTTTTCACGCA
ATCCTTCATCTCCAATGACGGTCAAAGCTACATGGATGAAGGTCAAACGC
GACTATTCCGTTCACTACGAGACATCGCAGTGGAGCGATTGAGCCATTAC
AATCTCTTCTTGAATGTAAGAGGACAACAGAATGTCTCGATGACTGCTTA
CCATAATGACTTCCCTGGCTTGGTTCATTTCATATACACGAACAGTATCA
AACGAATCGAATGGGAAATTACTACAAAGGTTTTGAGCAGAAATGGAACG
CTACACAAGATGCTGGGCTTTTAGACTTTATCAACAGTGATACTCCTTCT
GTTGAAATGAATGCAAGCATCGACATATGTTCTTGGCTTTCTACATTCAA
AACATGTTACGATGTTTGAACCTGATCCTCGTCATCACCAAACAAAAACA
ATTGTCATACCGCATGAAACTGTTTGATGATTGTGAAAAATATCGACAAA
AAATTCAACTCTTCTTCTTACGGACAAGCGGTGACCAAAATCACGAGAAG
AAAGAATCGAACCATTCAAATAACGCTTCACCATCAACGTTGGTTAATCA
CCATACGGAGATAGATGAAACAGATACTGGTAGTGAAGCTTTAGATTCCC
AACAACATCAAATGAACCAAGAAGACATTGAAGATCAAACACCAACGAAC
AGTAAAATTGAAGAAAAAGAAGAAGACTTAGATGAAGATACAGAAGAAGA
AATAGAAGTCCTTGAAGACATTATTCATCATAACATCTTTCTGAAGAGTA
GCGCGGAAAGTTCGTTTGCACCCTACACAGCACACTGTCTTCTACTGAGC
AATGCGACAGTGCTGGTCCTTCTTTCACAAGGACCTGATGTGTCACCTCT
TCCCGTCAGAACCGAAAGGTAGCATCAACTGTTACGAACTCTTTTGCGTC
CACGTTGGATTAGTAAGTAACCAATACGTCGCAAGTTCCTGTAAGAAGTT
ATCTCGCAAATTGGAAGGTTCCGGTGAGATCGTTGTTTTATGAAACCACG
GATCAGCTAGTGGCACCTACCGTCAACGTCAATATTGATTCGAACAATTC
TTTATACAATCTCATCAAGCAACGAATATGGGACTATTGGCAATATTCTG
AAACCATGCTGTCTAAAGGTTATACATCATTCATGCTGAGAGACGGCGAC
TTTTGTTATTCTTACTTTATATGGTTCGAAGATTCGTTAAGGAAACCAAT
GTTGTCACAAAAATCCATGAAAGGCTTGAACGAAAATAAACCGACTGGTA
TTTTGTCTGGAAATTATTACAAATTAGAACAGAACCTTGTAAACCTGATC
AAAAGCACCAAAGCACTTTTCACGCAATCCTTCATCTCCAATGACGGTCA
AAGCTACATGGATGAAGGTCAAACGCGACTATTCCGTTCACTACGAGACA
TCGCAGTGGAGCGATTGAGCCATTACAATCTCTTCTTGAATGTAAGAGGA
CAACAGAATGTCTCGATGACTGCTTACCATAATGACTTCCCTGGCTTGGT
TCATTTCATATACACGAACAGTATCAAACGAATCGAATGGGAAATTACTA
CAAAGGTTTTGAGCAGAAATGGAACGCTACACAAGATGCTGGGCTTTTAG
ACTTTATCAACAGTGATACTCCTTCTGTTGAAATGAATGCAAGCATCGAC
ATATGTTCTTGGCTTTCTACATTCAAAACATGTTACGATGTTTGAACCTG
ATCCTCGTCATCACCAAACAAAAACAATTGTCATACCGCATGAAACTGTT
TGATGATTGTGAAAAATATCGACAAAAAATTCAACTCTTCTTCTTACGGA
CAAGCGGTGACCAAAATCACGAGAAGAAAGAATCGAACCATTCAAATAAC
GCTTCACCATCAACGTTGGTTAATCACCATACGGAGATAGATGAAACAGA
TACTGGTAGTGAAGCTTTAGATTCCCAACAACATCAAATGAACCAAGAAG
ACATTGAAGATCAAACACCAACGAACAGTAAAATTGAAGAAAAAGAAGAA
GACTTAGATGAAGATACAGAAGAAGAAATAGAAGTCCTTGAAGACATTAT
TCATCATAACATCTTTCTGAAGAGTAGCGCGGAAAGTTCGTTTGCACCCT
ACACAGCACACTGTCTTCTACTGAGCAATGCGACAGTGCTGGTCCTTCTT
TCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044348XLOC_044348Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071366-proteinTCONS_00071366-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071366-exon-scaffold_60-1575043694:763753..764102TCONS_00071366-exon-scaffold_60-1575043694:763753..764102Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1575043694:761731..761895TCONS_00071366-exon-scaffold_60-1575043694:761731..761895Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1575043694:760979..761100TCONS_00071366-exon-scaffold_60-1575043694:760979..761100Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1575043694:760322..760570TCONS_00071366-exon-scaffold_60-1575043694:760322..760570Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1575043694:756194..756472TCONS_00071366-exon-scaffold_60-1575043694:756194..756472Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1575043694:755600..755815TCONS_00071366-exon-scaffold_60-1575043694:755600..755815Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1510915933:763753..764102TCONS_00071366-exon-scaffold_60-1510915933:763753..764102Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1510915933:761731..761895TCONS_00071366-exon-scaffold_60-1510915933:761731..761895Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1510915933:760979..761100TCONS_00071366-exon-scaffold_60-1510915933:760979..761100Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1510915933:760322..760570TCONS_00071366-exon-scaffold_60-1510915933:760322..760570Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1510915933:756194..756472TCONS_00071366-exon-scaffold_60-1510915933:756194..756472Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1510915933:755600..755815TCONS_00071366-exon-scaffold_60-1510915933:755600..755815Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1491911889:763753..764102TCONS_00071366-exon-scaffold_60-1491911889:763753..764102Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1491911889:761731..761895TCONS_00071366-exon-scaffold_60-1491911889:761731..761895Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1491911889:760979..761100TCONS_00071366-exon-scaffold_60-1491911889:760979..761100Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1491911889:760322..760570TCONS_00071366-exon-scaffold_60-1491911889:760322..760570Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1491911889:756194..756472TCONS_00071366-exon-scaffold_60-1491911889:756194..756472Clytia hemisphaericaexon
TCONS_00071366-exon-scaffold_60-1491911889:755600..755815TCONS_00071366-exon-scaffold_60-1491911889:755600..755815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:755600..764102 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81416	3.01095	3.03495	2.09872	1.20038	0.741941	0.773921	0.526119	0.484669	0.726728	0.214681	0.161283	0.261721	0.229984	0.257834	0.404842	0.298412	0.480851	0.0838559	0.252561	0.170556	0.45393	0.71971	0.963264	0.546106	0.670156	0.23043	0.093042	0.806366	0.512568
Blast
[Close]
BLAST of TCONS_00071366 vs. Swiss-Prot (Human)
Match: HPS1 (Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 9.378e-34
Identity = 64/187 (34.22%), Postives = 110/187 (58.82%), Query Frame = 3 
Query:  774 ERLSHYNLFLNVRGQQNVSMTAYHNDFPGLVHFIYTNRTTDQLVAPTVNVNIDSNN-----SLYNLIKQRIWDYWQYSETMLSKGYTSFMLRDGDFCYSYFIWFEDSL-------RKPMLSQKSMKGLNENKPTGILSGNYYKDLMCHLFPSEPKGSINCYELFCVHVGLVSNQYVASSCKKLSRKL 1298
            E+L+ +  FL V+ ++N++M +Y  DFPGLVHFIY +RTT Q+VAP++N +  +++      L   +K ++W   Q +   L KGYT+ + ++GDF  SYF+WFE+ +         P+LS  S+       P G+L G+YY+ L+ +   + P  ++ CYEL  +H+ ++    +     +L+R+L
Sbjct:  512 EKLTDWKDFLLVKSRRNITMVSYLEDFPGLVHFIYVDRTTGQMVAPSLNCSQKTSSELGKGPLAAFVKTKVWSLIQLARRYLQKGYTTLLFQEGDFYCSYFLWFENDMGYKLQMIEVPVLSDDSV-------PIGMLGGDYYRKLLRYYSKNRPTEAVRCYELLALHLSVIPTDLLVQQAGQLARRL 691
The following BLAST results are available for this feature:
BLAST of TCONS_00071366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HPS19.378e-3434.22Hermansky-Pudlak syndrome 1 protein OS=Homo sapien... [more]
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