TCONS_00071366-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071366-protein
Unique Name	TCONS_00071366-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	441

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071366-protein ID=TCONS_00071366-protein|Name=TCONS_00071366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
DQNHEKKESNHSNNASPSTLVNHHTEIDETDTGSEALDSQQHQMNQEDIE
DQTPTNSKIEEKEEDLDEDTEEEIEVLEDIIHHNIFLKSSAESSFAPYTA
HCLLLSNATVLVLLSQHRHMFLAFYIQNMLRCLNLILVITKQKQLSYRMK
LFDDCEKYRQKIQLFFLRTSGYQTNRMGNYYKGFEQKWNATQDAGLLDFI
NSDTPSVEMNARLEQNLVNLIKSTKALFTQSFISNDGQSYMDEGQTRLFR
SLRDIAVERLSHYNLFLNVRGQQNVSMTAYHNDFPGLVHFIYTNRTTDQL
VAPTVNVNIDSNNSLYNLIKQRIWDYWQYSETMLSKGYTSFMLRDGDFCY
SYFIWFEDSLRKPMLSQKSMKGLNENKPTGILSGNYYKDLMCHLFPSEPK
GSINCYELFCVHVGLVSNQYVASSCKKLSRKLEGSGEIVVL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044348	XLOC_044348	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071366	TCONS_00071366	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72

Blast

[Close]

BLAST of TCONS_00071366-protein vs. Swiss-Prot (Human)
Match: HPS1 (Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 8.381e-38
Identity = 118/472 (25.00%), Postives = 214/472 (45.34%), Query Frame = 0

Query:    2 QNHEKKESNHSNNASPSTLVNHHTEIDETDTGSEALDSQQHQMNQED-----IEDQTPTNSKIEEKEEDLDEDTEEEIEVLEDIIHH--------NIFLKSSAESSFAPYTAH---CLLLSNATVLVLLSQHRHMFLAFYIQNMLRCLNLI---LVITKQKQLSYR-MKLFDDCEKYRQKIQLFFLRTSGYQTNRMGNYYKGFEQKWNATQDAGLLDFINSDTPSVEMNARLEQNLVNLIKSTKALFTQSFISNDGQSYMDEGQTRLFRSLRDIAVERLSHYNLFLNVRGQQNVSMTAYHNDFPGLVHFIYTNRTTDQLVAPTVNVNIDSNN-----SLYNLIKQRIWDYWQYSETMLSKGYTSFMLRDGDFCYSYFIWFEDSL-------RKPMLSQKSMKGLNENKPTGILSGNYYKDLMCHLFPSEPKGSINCYELFCVHVGLVSNQYVASSCKKLSRKLEGSGEIVVL 441
            QN   +++   ++  P+   +  TE D      E         +Q       +E  TP    ++     + EDT      L+ ++ H         IFL ++ + S+ P   H   CL L     LVLL++     LA  +  ++   +++   L    +   S R   L  D  +   K    F++  G Q   + + +  F+ K  +  + G      S    ++   +L++ L  + +     F  +  S  G       Q ++ R +R    E+L+ +  FL V+ ++N++M +Y  DFPGLVHFIY +RTT Q+VAP++N +  +++      L   +K ++W   Q +   L KGYT+ + ++GDF  SYF+WFE+ +         P+LS  S+       P G+L G+YY+ L+ +   + P  ++ CYEL  +H+ ++    +     +L+R+L  +  I +L
Sbjct:  266 QNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQ-----IAEDT------LQTLVPHCPVPSGPRRIFLDANVKESYCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFSMLEKKLKEGPEPGASLRSQPLVGDLRQRMDK----FVKNRGAQ--EIQSTWLEFKAKAFSKSEPG------SSWELLQACGKLKRQLCAIYRLN---FLTTAPSRGGPHLPQHLQDQVQRLMR----EKLTDWKDFLLVKSRRNITMVSYLEDFPGLVHFIYVDRTTGQMVAPSLNCSQKTSSELGKGPLAAFVKTKVWSLIQLARRYLQKGYTTLLFQEGDFYCSYFLWFENDMGYKLQMIEVPVLSDDSV-------PIGMLGGDYYRKLLRYYSKNRPTEAVRCYELLALHLSVIPTDLLVQQAGQLARRLWEASRIPLL 700

The following BLAST results are available for this feature:

BLAST of TCONS_00071366-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071366-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HPS1	8.381e-38	25.00	Hermansky-Pudlak syndrome 1 protein OS=Homo sapien...	[more]

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TCONS_00071366-protein (polypeptide) - C. hemisphaerica