TCONS_00071321 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071321
Unique Name	TCONS_00071321
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1539

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:1715455..1720300+

transcript sequence

>TCONS_00071321 ID=TCONS_00071321|Name=TCONS_00071321|organism=Clytia hemisphaerica|type=transcript|length=1539bp
TAGCAAATGATAAACAAAACAACAAGATTTTtatcaatgatgaaaaataa
agtAACAACTCCTGACCCTTCACAGAAgtcaatttcatcattttttcaaa
agtcaaccAAAAGGAGTAGTAGTAACATGTCATCACCACCAGCAAAGATT
GCCAAGAGAAATGATGGAAAGGAGAATGCTACAACAACTAGTCCTTTATC
ACCagaacagaaaagaaaaatggaagAAAACCGGGTAAAAGCACAGGAGA
AACTTCTTGAGAAGACTACTCAGGAATTTGATATTGGTCAAAGTTGGAAG
AAGGCATTAGAGCCAGAATTCTCTAAAGAATATTTCGGCAAactCAAGAA
CTTTGTTGCAgctgaaagaaaacaaaagacaaTTTATCCACCtgAAAAAG
ATGTTTTCAGTTGGACCAATTATTTTGACATTAATGATACAAAAGTTGTT
ATCATTGGACAAGATCCCTATCATGGTCCAAAACAAGCACATGGTCTATG
TTTTAGCGTGCAACTTGGTATAACTCCTCCACCAAGtttgaagaaTATGT
ACAAAGAGTTGGCGAGTGATATCGAAGGATTTGAAATCCCAAGTCATGGT
TATCTTGCCGGATGGGCAAGCCAAGgCGTTCTGCTATTAAACGCTTGTTT
AACAGTTGTTGCTCATAATGCTAATTCACATCAAGGAAAGGGTTGGGAAA
AGCTGACCGACGCAACGATCAAATGGATCGATAGAAATCTTGATGGTGTT
GTCTTTATATTGTGGGGAAAATATGCTGAGAAAAAGGAGTCGACATTTGG
TATTGACGGGAAAACATCCTTCGCCACTGTCGGCACACCGTGGATTTTTC
GGTTGtaagcatttttcaaaaaccaacgagtatcttcaaaaacaaaagaa
aaaacctaTCGATTGGAATTATTTACCAGAGAAACTTGATTAGATTTCAA
AGTTGACTTGCTTTGAAACACTGATTTTCATGATAGATTTTCTACTAGAg
gattttatgaagaaaatgcTGGGTAATAGAAGTTTTGGCTTCACTAGAAG
TTTTCTATTGTAAAGGGGAGATCTCAAGAAGTCTAACTTAACTGGACTCG
TCTGATAGAGAGAAACTGATATAAAGAATGATTTTGATTATGGTGATGCT
ATATAACACCCCTTCTCGCAGACAAGGTATGACCCCCTCaaactggaaaa
attgaccaaaatatcgccCCCATTGGAAAATAATCATATAAACAAATCCt
atactgcaaaatattgtgctttcTTTCATCCCACTGAATTtgctgacttg
aaaacaattttgaaaggaagattttgcgcggcacataccgtcgtttcgaa
atcgagtcCCTCCCTACTTCATAAAAACATGGCCTGgtctgttattttta
tcccatttcactttcttttttttttttattattttacacctaagtttttt
ttaatgttgttttgtaaatatttttaaaagcttAAAAGTATCAGAAatgt
aaatataaaatttttagaaaccaaagaGATAAAAACAAC

Run BLAST on NCBI

transcript from alignment at scaffold_60:1715455..1720300+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071321 ID=TCONS_00071321|Name=TCONS_00071321|organism=Clytia hemisphaerica|type=transcript|length=4846bp|location=Sequence derived from alignment at scaffold_60:1715455..1720300+ (Clytia hemisphaerica)
TAGCAAATGATAAACAAAACAACAAGATTTTtatcaatgatgaaaaataa
agtAACAACTCCTGACCCTTCACAGAAgtcaatttcatcattttttcaaa
agtcaaccAAAAGGAGTAGTAGTAACATGTCATCACCACCAGCAAAGATT
GCCAAGAGAAATGATGGAAAGGAGAATGCTACAACAACTAGTCCTTTATC
ACCagaacagaaaagaaaaatggaagAAAACCGGGTAAAAGCACAGGAGA
AACTTCTTGAGAAGACTACTCAGGAATTTGATATTGGTCAAAGTTGGAAG
AAGGCATTAGAGCCAGAATTCTCTAAAGAATATTTCGGCAAagtaataaa
atctttaaatagtATTTGTTTATCGATTTAATTTAACTAAAGTTAACTCT
GTTTATTTTAGTGGCATTCTTTTTATCTCATTTAAGTGCATTGCTTTGTT
TGTACAAAATACCCATTATATTTATTAGATGCAATATAATCTTTGGTTAT
AAATACATGAAACTAAGGTTTTATGAAGAATTCACtgcaatctttttttt
aagctCAAGAACTTTGTTGCAgctgaaagaaaacaaaagacaaTTTATCC
ACCtggtaaatatgatattttttataCCATTATACCTTAAAAAACTTAGA
CCAGCAGGTAGTTTTAATTCCCACCAGTCAAATTGAAATCCAATCTTAAA
AATCCCAGCTTGAGAGAGAATGATCAGAATGATCTATCAGAGGAACTGGC
CTAAAATATACAAATAATGAATTCTAGGAAATCACAAAATGATTCTGGAC
ctttaaatgaaaaaactttataGTCATATTATTGTaacagaaaatatttt
cctACAATACTATCCAATCACAGGGTTTGATCATTTtgataaacttttaa
aatttaaacgATTTGACCAATATGTAACAGGGTCAACAATAAGTAACCTT
TTTTCATTCACTTTTAGAAAAAGATGTTTTCAGTTGGACCAATTATTTTG
ACATTAATGATACAAAAGTTGTTATCATTGGACAAGATCCCTATCATGGT
CCAAAACAAGCACATGGTTCGAATTTATTAATCAAGTTACATTCtactaa
aaatatttgtttatatttttcattcgGGTTAAAGAAGATGTCTCAATAAA
TTGAAGGCCATTATTCGTTGTGGCAAAACGTcatactcttgggtacctaa
tagcctaatataataataacctaatataatataataataacctaattttt
ggaaaaagtttttgaaagttccctcttttgtcctaattctgctgtattag
cctccttttcaaaaatattccaccAATGACATTTTTGTTCTAATCCCCCT
TGCTTATTAAGTTTCGAGATTTTTTCTAACCCTCCCCCGGCTTATTCCAA
CCATCCCCCctccggctattaggtacccgagagtatctgAAGACACTAAA
AACTGTTATACTTTAGATATAGAAGTTCAAGTTGGGTACTTTTCAGGGCT
TTTTCCGGGATAGTGTCTTCTTATTTTTGCTTGAGGTAAATTTAGGCAAG
CATTTAGTGACTAGAAGAATATACCCCCTGCTATAATATCGAAAACAAAA
CTAACTTATGAAATCTAATCATATTATATTTGTTATTGACAGGTCTATGT
TTTAGCGTGCAACTTGGTATAACTCCTCCACCAAGGTTTGAAAAACGAGT
TTatatttcgaaatttcaaaatctcaagttttttaaaaataattcctATA
AATTATAAAGATAAAGATTAAATATATTAATTAAGTATTTGCAAAAGATA
TAATGTTTAAGTTAAGTTATAAGTTATCTTAACCCTTCgagcaataaaga
aaaaaaattctcgaaattgactgaaattgaaaattgaaattttgcaagtg
tGTATCTTTGGTAAGACTTTTGAAGGTCAACATCAAGATCATAATATAGT
CAACCTTGAGATTGTAAGTCCCCCAGGATGCTTCCCCTAGTGAAAATATA
GGAAAATGCTTGAAGGGTTAAAATCATTCAGGGCAttgtttaaaaagatt
ttagttTTAACCTCTGGAGGGATTGCATCAATCATATTACAATTTGGTCT
CATTATATTCATATTGCATGTGTATTATTTTCAAAGGTGGCATAATATTC
TGAAGGTCAGTTTTCGGTCGTACCTTCATATCTTATAAAATATCTTGGAA
AATGAAAGATCTAACAATATTACTCTTTTGCAGACCTATTCAAGTTTAGG
TGTATTACAATCTTTCCTATAAGACAGCAAATAAATTTAgaatctaaatt
ttcagtttgaagaaTATGTACAAAGAGTTGGCGAGTGATATCGAAGGATT
TGAAATCCCAAGTCATGGTTATCTTGCCGGATGGGCAAGCCAAGGTGAAT
GAAAGTATTTAATCAATTCCTACTAATGAAGAGCAATTAAAATCATATTT
GATCAGATGTTAAGATATCTCGCTTAAGATATTTCACTCTCAGGCTTAAA
CGAAACTAAAAGTAGCCGTACTAATGATCAGTGGCCGTATCATGAATGcc
gagcatccagctacggtgcgcaagattgtgggttcgatcccccagccggg
tcataccaaagattcccaaaatggtacttaatgcctctctgcttgatgct
cagtcaTTAAAGGGACGGATCaggggtaagtggagaaatcaaGGGAAAGG
AGTAGCGCCTCCCCTACCTCAGGGTAAACAGCTAGAGAAANAGACGGACC
aggggtaagtggagaaatcaaGGGAAAGGAGTAGCGCCTCCCCTACCTCA
gggtagacagctagagaaaagagagcctttgggtcgccctcgactgcggt
cgcaaacttacttactttactaatgatgtttatatttttgttttaatttt
aggCGTTCTGCTATTAAACGCTTGTTTAACAGTTGTTGCTCATAATGCTA
ATTCACATCAAGGAAAGGTATGAATCATATTcctctaaattttaaattca
gCTAATTTTCTCTGAATACACTTGAACTTTGAAGCCGTTCCATAACTTTA
AGATTGAATTTCTgacataaaaaagtgcttataaaaatcttTGTTGAACT
TCCATCGTTTATTATGAAAGTAACCTTGGGAAGTTCCATTTACATCTAAT
CGGGTATACTATTGTAATTCCCTTTGATTCTAATATTTGTTAGCTACAAT
CAGTGCAAAAATGTGTTGACAGTAAGTCTCGAAGAATACCACTAAAACTT
TTATTTCACTGCTCAGATCCCCAATTTCAATGGTTAGAGAACCGAGGATT
TCCTGACCGGGCAAACACTGTTTACTGCCAAATAtctggcactgattgta
gttaTTTGGTGTTTACTAGTGAAAATGTCACCTTTATGCTTTTTCCCGCT
CATTTGTGAAGTACTCTACTGTCAAATTTATTTGTCAATTCGTTATTTTT
AACAGtagtaaaaagttttaaaaacattattgTCCGTCCCTTTTCGCCTG
AATAATCGTTAACGACTACTTTTAAAGTtcaaagtatttattttcactat
caaaaaaagtgaatataaagTGCTGGAAAAATACAGAAGACTAGTCCTAG
accaaacaaaaataatttctttcattctttCAAGGGTTGGGAAAAGCTGA
CCGACGCAACGATCAAATGGATCGATAGAAATCTTGATGGTGTTGTCTTT
ATATTGTGGGGAAAATATGCTGAGAAAAAGGGTAGTTTTATCAATAAGGT
ACGACCATTATGTTCTTTTCAACAGTTTGTGTACTTTATCGCTAGAAAAT
GAGTCGGNAAATAAAGTACGACCATTATGTTCTTTTCAACAGTTTGTGTA
CTTTATCGCTAGAAAATGAGTCggtaaaattgatgaaaaattgcTTACTG
TCGTAATAttttaccgacgaatttttatagtcgacattttttttttccgg
cGATTATTTTGATCAACGTTTGATTTTTAgctcaacaaatatttttttta
ccaaagtTATTATTggtttaaaattaaaaactatCTGATGACAATGCATT
GAATCTCTGAAATTATAATATTCTACGAACGTATTTTTGTTTAGAGTCGA
CATTTGGTATTGACGGGAAAACATCCTTCGCCACTGTCGGCACACCGTGG
ATTTTTCGGTTGtaagcatttttcaaaaaccaacgagtatcttcaaaaac
aaaagaaaaaacctaTCGATTGGAATTATTTACCAGAGAAACTTGATTAG
ATTTCAAAGTTGACTTGCTTTGAAACACTGATTTTCATGATAGATTTTCT
ACTAGAggattttatgaagaaaatgcTGGGTAATAGAAGTTTTGGCTTCA
CTAGAAGTTTTCTATTGTAAAGGGGAGATCTCAAGAAGTCTAACTTAACT
GGACTCGTCTGATAGAGAGAAACTGATATAAAGAATGATTTTGATTATGG
TGATGCTATATAACACCCCTTCTCGCAGACAAGGTATGACCCCCTCaaac
tggaaaaattgaccaaaatatcgccCCCATTGGAAAATAATCATATAAAC
AAATCCtatactgcaaaatattgtgctttcTTTCATCCCACTGAATTtgc
tgacttgaaaacaattttgaaaggaagattttgcgcggcacataccgtcg
tttcgaaatcgagtcCCTCCCTACTTCATAAAAACATGGCCTGgtctgtt
atttttatcccatttcactttcttttttttttttattattttacacctaa
gttttttttaatgttgttttgtaaatatttttaaaagcttAAAAGTATCA
GAAatgtaaatataaaatttttagaaaccaaagaGATAAAAACAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044323	XLOC_044323	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:1715455..1720300 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.00504	1.40924	2.18707	0.433765	0	0.388805	0	1.19104	0	0	0	0	0	0	0	0	0	0	0.873801	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00071321 vs. Swiss-Prot (Human)
Match: UNG (Uracil-DNA glycosylase OS=Homo sapiens GN=UNG PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 8.211e-76
Identity = 121/213 (56.81%), Postives = 150/213 (70.42%), Query Frame = 1

Query:  166 GKENATT--TSPLSPEQKRKMEENRVKAQEKLLEKTTQEFDIGQSWKKALEPEFSKEYFGKLKNFVAAERKQKTIYPPEKDVFSWTNYFDINDTKVVIIGQDPYHGPKQAHGLCFSVQLGITPPPSLKNMYKELASDIEGFEIPSHGYLAGWASQGVLLLNACLTVVAHNANSHQGKGWEKLTDATIKWIDRNLDGVVFILWGKYAEKKESTF 798
            G+E   T  +SPLS EQ  +++ N+  A  +L  +       G+SWKK L  EF K YF KL  FVA ERK  T+YPP   VF+WT   DI D KVVI+GQDPYHGP QAHGLCFSVQ  + PPPSL+N+YKEL++DIE F  P HG L+GWA QGVLLLNA LTV AH ANSH+ +GWE+ TDA + W+++N +G+VF+LWG YA+KK S  
Sbjct:   54 GQEEPGTPPSSPLSAEQLDRIQRNKAAALLRLAARNV-PVGFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAI 265

The following BLAST results are available for this feature:

BLAST of TCONS_00071321 vs. Swiss-Prot (Human)

BLAST of TCONS_00071321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UNG	8.211e-76	56.81	Uracil-DNA glycosylase OS=Homo sapiens GN=UNG PE=1...	[more]

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TCONS_00071321 (transcript) - C. hemisphaerica