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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071280 ID=TCONS_00071280|Name=TCONS_00071280|organism=Clytia hemisphaerica|type=transcript|length=794bp
TTCAGatcaatatataaaaaatatctaCGGTGGtgtaaaatataaacaaa
ccaaaaatgaaagtgatacGAGAATCGTACGATCTCAAAAACATtagtaa
aaaaatcacaatattttttacaaaaagggcaaagagaaaatttcaaatta
tttctgatGGACCTTCACGACCTTCAAGGCTATTCAAAATTATTGCTACC
CAAAGtcTTGCTGATGCAAAGTCACTGTTAAACAACAAAGCAGACCATAC
CATCAAAAGTAACTGAAGCAATAGAAAGAATTTCAAAGAAGCATCAAAAT
GAAGAAGGATACAGTTGTCAACCTGAAGGATGATAAAAAGCACAAACGAA
GACATATCTTGCGTGAACTGAAAAAAGTATTGATTAATTTCTATGATTCT
GCAAAAACTATCCATGTGACAATTTATGATAATTTGAGCAGCTATATTTC
AAGCAGCTTCGGCTATGCACCAGGACGTGGAAACTTTCCaagaaatgaaa
atcttttatggaaataaacaaaaatacattCCCAGATCCCATCCAGATTT
GGAGTACTTAAATTTTAACCTGGATTGGTCTGTACAGTACTCTCTTACTT
TGACACCCTGAATCCACACATACTTTATCTTTTGTATCATatattttcat
gtaaaaaaagattttatataTAGTTTTAATggattatttttgtacaaaga
ttttacgttttttttagTAGCAGAGTTATTTCTacctcaaaatttcattt
tcgatttaatATTGTTTATTCAAAGTTGAATTGTGTGACAATTA Run BLAST on NCBI transcript from alignment at scaffold_60:983903..985112+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071280 ID=TCONS_00071280|Name=TCONS_00071280|organism=Clytia hemisphaerica|type=transcript|length=1210bp|location=Sequence derived from alignment at scaffold_60:983903..985112+ (Clytia hemisphaerica)
TTCAGatcaatatataaaaaatatctaCGGTGGtgtaaaatataaacaaa
ccaaaaatgaaagtgatacGAGAATCGTACGATCTCAAAAACATtagtaa
aaaaatcacaatattttttacaaaaagggcaaagagaaaatttcaaatta
tttctgatGGACCTTCACGACCTTCAAGGCTATTCAAAATTATTGCTACC
CAAAGGTAAGATGATATTTCTTTGGTGATATTGGAGCTCTATTTACAAAA
GCGAGTCACGGTGTCTTTCTCTATGTCTCTACTTTGACATTTcattataa
aatcaaaacatcctAATCTCATGCTGGCTTGACTATTATgtgttttgttt
tattgtctGTCCTTATAATTGTCAtgttatctcaaaatcattttatcAAT
CTACCGTGTCATAACATAAGTCATGTGTTAAAAGGTTTCTTGTATTATGT
TTGTTACTGCAAAGTGGTTCTCTCTAAATTTAGTGTGGAATAGCTAGTAT
AACACATGAAAGGCTCATTTTTTAATCACTGGATTCTGGAAACAATAATT
TTATTGAGAAAATCTTGAACACTTTATAAGTAAATTTGAGGTAATAACTT
CgtctatttttgaatttttagtcTTGCTGATGCAAAGTCACTGTTAAACA
ACAAAGCAGACCATACCATCAAAAGTAACTGAAGCAATAGAAAGAATTTC
AAAGAAGCATCAAAATGAAGAAGGATACAGTTGTCAACCTGAAGGATGAT
AAAAAGCACAAACGAAGACATATCTTGCGTGAACTGAAAAAAGTATTGAT
TAATTTCTATGATTCTGCAAAAACTATCCATGTGACAATTTATGATAATT
TGAGCAGCTATATTTCAAGCAGCTTCGGCTATGCACCAGGACGTGGAAAC
TTTCCaagaaatgaaaatcttttatggaaataaacaaaaatacattCCCA
GATCCCATCCAGATTTGGAGTACTTAAATTTTAACCTGGATTGGTCTGTA
CAGTACTCTCTTACTTTGACACCCTGAATCCACACATACTTTATCTTTTG
TATCATatattttcatgtaaaaaaagattttatataTAGTTTTAATggat
tatttttgtacaaagattttacgttttttttagTAGCAGAGTTATTTCTa
cctcaaaatttcattttcgatttaatATTGTTTATTCAAAGTTGAATTGT
GTGACAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071280-exon-scaffold_60-1491911889:983903..984107 | TCONS_00071280-exon-scaffold_60-1491911889:983903..984107 | Clytia hemisphaerica | exon |
| TCONS_00071280-exon-scaffold_60-1510915933:983903..984107 | TCONS_00071280-exon-scaffold_60-1510915933:983903..984107 | Clytia hemisphaerica | exon |
| TCONS_00071280-exon-scaffold_60-1575043694:983903..984107 | TCONS_00071280-exon-scaffold_60-1575043694:983903..984107 | Clytia hemisphaerica | exon |
| TCONS_00071280-exon-scaffold_60-1491911889:984524..985112 | TCONS_00071280-exon-scaffold_60-1491911889:984524..985112 | Clytia hemisphaerica | exon |
| TCONS_00071280-exon-scaffold_60-1510915933:984524..985112 | TCONS_00071280-exon-scaffold_60-1510915933:984524..985112 | Clytia hemisphaerica | exon |
| TCONS_00071280-exon-scaffold_60-1575043694:984524..985112 | TCONS_00071280-exon-scaffold_60-1575043694:984524..985112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:983903..985112 + |
Blast
The following BLAST results are available for this feature:
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