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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071275 ID=TCONS_00071275|Name=TCONS_00071275|organism=Clytia hemisphaerica|type=transcript|length=3203bpRun BLAST on NCBI transcript from alignment at scaffold_60:924490..933371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071275 ID=TCONS_00071275|Name=TCONS_00071275|organism=Clytia hemisphaerica|type=transcript|length=8882bp|location=Sequence derived from alignment at scaffold_60:924490..933371+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071275 vs. Swiss-Prot (Human)
Match: CO6A6 (Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 2.698e-24 Identity = 139/562 (24.73%), Postives = 231/562 (41.10%), Query Frame = 3
Query: 6 EPTCKA-KVDVGFVLDSSGSL-RNDYDKEKDFLKALAATFGVSDDGARAGVVTFSYYTEHSIKLNDHTSLDTFNEAVDNIKLMGSTTRIDKALRMTQKDMFSIPNGGRPGVNKVLIVLTDGSQTQDVGAEHPGIVAKELRDKGIRVISIGIGQGINTTELVHIAGGKENVFTAATFDDL--ISGDFLDKVTGFACNQAKYSPPEEIRQCDMEALDVVFGIDMS-SRSTQHYPQMNGFLTQFADALSANTKYLNLGALKYGSEAVVTFPYQSKPAADAFSQMVGKLTTVDNGRAVDAALVKAYEAFFKPRHNENGKSAGGYLSADRINEIVSGGKVGLQKVL--TRDGEEINRKRLFVLMVAGKHLDNGLDIIPVHAARLLYDLGIQIMVVAFDDVGD-RVTSIARNQRDVFEMHKGDSMLKFMNE----ICNKFEIKQPQYSRNGPIDVAFLLDSSASMYEA-YPLQAQIAQKIASQYQLSPNGTRASIVIYSNNAQIELLLKDGTSQEAFKQKVDNLPFLGLDTRLDRGLYLARLALFTKKYGAR--AKVPKILYIFIDGE 1646
E CK K D+ F++DSSGS+ ++ K K F+K L + + D + GVV FS + +LN S + A+D + +G TT AL + FS G RP + K LI++TDG + QD+ E P +V LR +G+ + S+G+ G N T+L I+G E VF FD L I D + + SP EE ++ +E LDVVF ID S S Y M F+ + GALKY + V F D F + ++ + N +A+ + A F + + R+N+ G+ +VL DGE + +L A+ L D GI ++ V D + ++A + F + + ++ +CN ++ +D+ FL+D S S+ + + + + +S N R +S+ E L ++ +++N+ + +T + L F G+R P++L + DG+
Sbjct: 613 EEACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFVSQ-YFSPTKGARPNIRKFLILITDG-EAQDIVKE-PAVV---LRQEGVIIYSVGV-FGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGIC---------SPREECKR--IEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLF------YLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDHMFTEARGS-------RLNK-------GVPQVLIVITDGESHDADKLNA------------------TAKALRDKGILVLAVGIDGANPVELLAMAGSSDKYFFVETFGGLKGIFSDVTASVCNSSKVD----CEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREVE-HYFRPDMGSRINTGTPQVLLVLTDGQ 1113 HSP 2 Score: 100.138 bits (248), Expect = 4.595e-21 Identity = 95/310 (30.65%), Postives = 145/310 (46.77%), Query Frame = 3
Query: 3 PEPTCK--AKVDVGFVLDSSGSLRND-YDKEKDFLKALAATFGVSDDGARAGVVTFSYYTEHSIKLNDHTSLDTFNEAVDNIKLMGSTTRIDKALRMTQKDMFSIPNGGR--PGVNKVLIVLTDGSQTQDVGAEHPGIVAKELRDKGIRVISIGIGQGINTTELVHIAGGKENVFTAATFDDLISGDFLDKVTGFACNQAKYSPPEEIRQCDMEALDVVFGIDMS-SRSTQHYPQMNGFLTQFADALSANTKYLNLGALKYGSEAVVTFPYQSKPAADAFSQMVGKLTTVDNGRAVDAALVKAYEAFFKP 914
P CK +DV FV+DSSGS+ D Y+ KDF+ L V + R G + ++ E L+D + + N + MG +T +AL + MF+ G R GV +VLIV+TDG ++ D A+ AK LRDKGI V+++GI G N EL+ +AG + F TF L G F D VT CN +K C+++ +D+VF +D S S + +M FL + + +GA ++ FP + S + + + + AAL + E +F+P
Sbjct: 798 PREECKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDH-MFTEARGSRLNKGVPQVLIVITDG-ESHD--ADKLNATAKALRDKGILVLAVGI-DGANPVELLAMAGSSDKYFFVETFGGL-KGIFSD-VTASVCNSSKVD-------CEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQIENIKQIFGNTHIGAAL-REVEHYFRP 1092 The following BLAST results are available for this feature:
BLAST of TCONS_00071275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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