|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071261 ID=TCONS_00071261|Name=TCONS_00071261|organism=Clytia hemisphaerica|type=transcript|length=1207bp
GAAATCTAAATTCAAACGGCTAGTTTTCCACAGTTCCGATAGCGAGGATG
AAGAAACCGAAGAAACTGTCGATTTTAATAGCACGAACGTCAAAATAAAC
ATTGCCATGCCTAAACGCTACATCCCTAACTTTTCTAAAACGACATCCGC
AACACACAAGGCACCGTCCTCTACAACCTCGAATCTTTCTAAACCAACAC
AATCCGAATCTGATCATGATACCGAATCCGACAGTGAGTCTGAGCCTGAC
GTTCCCATGATCGAGGAAGAGCAACCAAAAGGTCCTGGGCAGTTTGCTTC
ATGGAGCAAGTCTATCACCCTCATTTTCATCAGTGAATACGAAAAGAATT
ACGAGAATTTTCATACAGGACGATACCGAAAGAAAGAAGTTTGGGAAATG
ATCCACCAGGGCATAAAAAGAACGATTAAATCTGGAAATCCGGTACCATC
AGCTACACAATGCAAAACAAAGTGGCGAACACTGACAAAAGCGTACAATG
GGGTGATGATCAACAATCGGAAACAAAGTGGGGCGACGAGAGTCACTTGT
AAATTCTACGACGAGCTTAATCAAATACTGAGCAGAAAACCAAGCACCAA
ACCAGTGGATGAAATTGGAAACGTAGCACCCTTCAGGAACACTGATTCAT
TAGAAAACGTAACCAATGATGCGGTGGTACCTACAGAGGAACAATCTATT
GAACAAAGAAGCGCGGAACAGCATCACGAAAGAccgaagaaaagaaaata
cacTTCTACAGTAGATTCATCGACGCGTTTTTTGACGAACTGGCTTGACC
AATGGacaacaaaagaagaaagaaaagaaaaggaacGAGAAGAGAAACTA
GAGAAACAGttcgaaaaattagaaaaactagcagaagaaaaaaacaaaat
tttgaaagggcTACTACAAGCAATAACGAACCAAAAAGACAAGGAGTTAC
CTTCGGATGAGGACCATTGGGATGATTGATGATATCATGATTTATTAAAC
ATGTgtacaattttttgaaaatacttgTTCCTTTCGAAGcatgattttat
tttattccaaTAAGAGTTGTAAGTTATttcttaaataattttttatattt
acaatATGTGAATTAACAAGTTTAATTGTCATTAAAGAATAAGAATAAAT
AAGTTACAATAGTTAATAATCATATTGTGAAGAAATTATATTTCTCTAAC
ATCgtac Run BLAST on NCBI protein sequence of TCONS_00071261-protein >TCONS_00071261-protein ID=TCONS_00071261-protein|Name=TCONS_00071261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
KSKFKRLVFHSSDSEDEETEETVDFNSTNVKINIAMPKRYIPNFSKTTSA
THKAPSSTTSNLSKPTQSESDHDTESDSESEPDVPMIEEEQPKGPGQFAS
WSKSITLIFISEYEKNYENFHTGRYRKKEVWEMIHQGIKRTIKSGNPVPS
ATQCKTKWRTLTKAYNGVMINNRKQSGATRVTCKFYDELNQILSRKPSTK
PVDEIGNVAPFRNTDSLENVTNDAVVPTEEQSIEQRSAEQHHERPKKRKY
TSTVDSSTRFLTNWLDQWTTKEERKEKEREEKLEKQFEKLEKLAEEKNKI
LKGLLQAITNQKDKELPSDEDHWDD Run BLAST on NCBI transcript from alignment at scaffold_60:882805..884294+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071261 ID=TCONS_00071261|Name=TCONS_00071261|organism=Clytia hemisphaerica|type=transcript|length=1490bp|location=Sequence derived from alignment at scaffold_60:882805..884294+ (Clytia hemisphaerica)
GAAATCTAAATTCAAACGGCTAGTTTTCCACAGTTCCGATAGCGAGGATG
AAGAAACCGAAGAAACTGTCGATTTTAATAGCACGAACGTCAAAATAAAC
ATTGCCATGCCTAAACGCTACATCCCTAACTTTTCTAAAACGACATCCGC
AACACACAAGGCACCGTCCTCTACAACCTCGAATCTTTCTAAACCAACAC
AATCCGAATCTGATCATGATACCGAATCCGACAGTGAGTCTGAGCCTGAC
GTTCCCATGATCGAGGAAGAGCAACCAAAAGGTCCTGGGCAGTTTGCTTC
ATGGAGCAAGTCTATCACCCTCATTTTCATCAGTGAATACGAAAAGAATT
ACGAGAATTTTCATACAGGACGATACCGAAAGAAAGAAGTTTGGGAAATG
ATCCACCAGGGCATAAAAAGAACGATTAAATCTGGAAATCCGGTACCATC
AGCTACACAATGCAAAACAAAGTGGCGAACACTGACAAAAGCGTACAATG
GGTaattttatttacttatttacttATTATCTTAGGGGCGCTTAGGGGTA
TTAAGGCAAGTGGTAAGAAAAATGCTCACCTCCCAAGTTTAATTCTACTC
TagggaaattccgaaaatcaGCCAAATACATTATANCCAAGGGGGCGCTT
AGGGGTACCAAGGCAAGTGGTAAGAAAAATGCTCATATCCCAAGTTTAAT
TCTACTCTagggaaattccgaaaatcaGCCAAatacattataaaaaaaca
tgttaggATATTAGGATATTTATGTGTCTTTTAGGGTGATGATCAACAAT
CGGAAACAAAGTGGGGCGACGAGAGTCACTTGTAAATTCTACGACGAGCT
TAATCAAATACTGAGCAGAAAACCAAGCACCAAACCAGTGGATGAAATTG
GAAACGTAGCACCCTTCAGGAACACTGATTCATTAGAAAACGTAACCAAT
GATGCGGTGGTACCTACAGAGGAACAATCTATTGAACAAAGAAGCGCGGA
ACAGCATCACGAAAGAccgaagaaaagaaaatacacTTCTACAGTAGATT
CATCGACGCGTTTTTTGACGAACTGGCTTGACCAATGGacaacaaaagaa
gaaagaaaagaaaaggaacGAGAAGAGAAACTAGAGAAACAGttcgaaaa
attagaaaaactagcagaagaaaaaaacaaaattttgaaagggcTACTAC
AAGCAATAACGAACCAAAAAGACAAGGAGTTACCTTCGGATGAGGACCAT
TGGGATGATTGATGATATCATGATTTATTAAACATGTgtacaattttttg
aaaatacttgTTCCTTTCGAAGcatgattttattttattccaaTAAGAGT
TGTAAGTTATttcttaaataattttttatatttacaatATGTGAATTAAC
AAGTTTAATTGTCATTAAAGAATAAGAATAAATAAGTTACAATAGTTAAT
AATCATATTGTGAAGAAATTATATTTCTCTAACATCgtac Coding sequence (CDS) from alignment at scaffold_60:882805..884294+ >TCONS_00071261 ID=TCONS_00071261|Name=TCONS_00071261|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_60:882805..884294+ (Clytia hemisphaerica)
AAATCTAAATTCAAACGGCTAGTTTTCCACAGTTCCGATAGCGAGGATGA
AGAAACCGAAGAAACTGTCGATTTTAATAGCACGAACGTCAAAATAAACA
TTGCCATGCCTAAACGCTACATCCCTAACTTTTCTAAAACGACATCCGCA
ACACACAAGGCACCGTCCTCTACAACCTCGAATCTTTCTAAACCAACACA
ATCCGAATCTGATCATGATACCGAATCCGACAGTGAGTCTGAGCCTGACG
TTCCCATGATCGAGGAAGAGCAACCAAAAGGTCCTGGGCAGTTTGCTTCA
TGGAGCAAGTCTATCACCCTCATTTTCATCAGTGAATACGAAAAGAATTA
CGAGAATTTTCATACAGGACGATACCGAAAGAAAGAAGTTTGGGAAATGA
TCCACCAGGGCATAAAAAGAACGATTAAATCTGGAAATCCGGTACCATCA
GCTACACAATGCAAAACAAAGTGGCGAACACTGACAAAAGCGTACAATGG
GGTGATGATCAACAATCGGAAACAAAGTGGGGCGACGAGAGTCACTTGTA
AATTCTACGACGAGCTTAATCAAATACTGAGCAGAAAACCAAGCACCAAA
CCAGTGGATGAAATTGGAAACGTAGCACCCTTCAGGAACACTGATTCATT
AGAAAACGTAACCAATGATGCGGTGGTACCTACAGAGGAACAATCTATTG
AACAAAGAAGCGCGGAACAGCATCACGAAAGAccgaagaaaagaaaatac
acTTCTACAGTAGATTCATCGACGCGTTTTTTGACGAACTGGCTTGACCA
ATGGacaacaaaagaagaaagaaaagaaaaggaacGAGAAGAGAAACTAG
AGAAACAGttcgaaaaattagaaaaactagcagaagaaaaaaacaaaatt
ttgaaagggcTACTACAAGCAATAACGAACCAAAAAGACAAGGAGTTACC
TTCGGATGAGGACCATTGGGATGATTGAAAATCTAAATTCAAACGGCTAG
TTTTCCACAGTTCCGATAGCGAGGATGAAGAAACCGAAGAAACTGTCGAT
TTTAATAGCACGAACGTCAAAATAAACATTGCCATGCCTAAACGCTACAT
CCCTAACTTTTCTAAAACGACATCCGCAACACACAAGGCACCGTCCTCTA
CAACCTCGAATCTTTCTAAACCAACACAATCCGAATCTGATCATGATACC
GAATCCGACAGTGAGTCTGAGCCTGACGTTCCCATGATCGAGGAAGAGCA
ACCAAAAGGTCCTGGGCAGTTTGCTTCATGGAGCAAGTCTATCACCCTCA
TTTTCATCAGTGAATACGAAAAGAATTACGAGAATTTTCATACAGGACGA
TACCGAAAGAAAGAAGTTTGGGAAATGATCCACCAGGGCATAAAAAGAAC
GATTAAATCTGGAAATCCGGTACCATCAGCTACACAATGCAAAACAAAGT
GGCGAACACTGACAAAAGCGTACAATGGGGTGATGATCAACAATCGGAAA
CAAAGTGGGGCGACGAGAGTCACTTGTAAATTCTACGACGAGCTTAATCA
AATACTGAGCAGAAAACCAAGCACCAAACCAGTGGATGAAATTGGAAACG
TAGCACCCTTCAGGAACACTGATTCATTAGAAAACGTAACCAATGATGCG
GTGGTACCTACAGAGGAACAATCTATTGAACAAAGAAGCGCGGAACAGCA
TCACGAAAGAccgaagaaaagaaaatacacTTCTACAGTAGATTCATCGA
CGCGTTTTTTGACGAACTGGCTTGACCAATGGacaacaaaagaagaaaga
aaagaaaaggaacGAGAAGAGAAACTAGAGAAACAGttcgaaaaattaga
aaaactagcagaagaaaaaaacaaaattttgaaagggcTACTACAAGCAA
TAACGAACCAAAAAGACAAGGAGTTACCTTCGGATGAGGACCATTGGGAT
GATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071261-exon-scaffold_60-1491911889:882805..883305 | TCONS_00071261-exon-scaffold_60-1491911889:882805..883305 | Clytia hemisphaerica | exon |
| TCONS_00071261-exon-scaffold_60-1510915933:882805..883305 | TCONS_00071261-exon-scaffold_60-1510915933:882805..883305 | Clytia hemisphaerica | exon |
| TCONS_00071261-exon-scaffold_60-1575043694:882805..883305 | TCONS_00071261-exon-scaffold_60-1575043694:882805..883305 | Clytia hemisphaerica | exon |
| TCONS_00071261-exon-scaffold_60-1491911889:883589..884294 | TCONS_00071261-exon-scaffold_60-1491911889:883589..884294 | Clytia hemisphaerica | exon |
| TCONS_00071261-exon-scaffold_60-1510915933:883589..884294 | TCONS_00071261-exon-scaffold_60-1510915933:883589..884294 | Clytia hemisphaerica | exon |
| TCONS_00071261-exon-scaffold_60-1575043694:883589..884294 | TCONS_00071261-exon-scaffold_60-1575043694:883589..884294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:882805..884294 + |
Blast
The following BLAST results are available for this feature:
|
