TCONS_00071255 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071255
Unique Name	TCONS_00071255
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1449

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:831254..835645+

transcript sequence

>TCONS_00071255 ID=TCONS_00071255|Name=TCONS_00071255|organism=Clytia hemisphaerica|type=transcript|length=1449bp
CTGTTGTCTTTTTCTCTGTACACAAAATATTACATCCATCAACActttga
aaaaattaacattCTTTGACTTGGACAACTGAAACTTTGGAAGGCAGACT
CAATACACTGGTGGAAAAGCAGATATGgGTCTTCTCAATTTGATAAGAAA
GATGAAGaagaataaaaacaaggaaatgcgTATTCTATTACTTGGTTTGG
ATAATGCTGGAAAAACAACCATTTTGAAGTCATTAGCCTCAGAGGATATT
AGTCATATCACTCCCACGCAGGGTTTCAATATCAAATCAGTTCAATCATC
AGGAATCCTTCTAAACGTATGGGATATCGGAGGTCAAAAAACAATCAGAC
CATATTGGAgaaactattttgaaaatacaGATGTCCTTATATATGTTATT
GATAGCGCTGATCAACAACGATTTGAAGAGTCTGGTTTCcAATTGGCTGA
ACTGCTCGAAGAGGAAAAACTTCAAGGAGTTCCTGTTCTGgtttttgcaa
ataaacaaGATCTGATGAATGCTGCCAAATCAGATGTGATTATGGATACT
ATGTCATTGAATGATATCAAGGATCGACCATGGCAAATACAAGCGTGTTC
AGCTCTCTCTGGTGAAGGTTTATCGCATGGGCTTGATTGGATTCAGAAGA
ACATCAAATCTTGAAAGTATGATGAATTTGAAAACTGCCATAAGTATCTG
CCATAAACTATGGTGAAACATTGAATCAATCTTTGAAGTCTCCTCTACAG
CTCTTTTAAGAGTTATGACCTTTCTTGTTTTTGCACCTTTTTATTCACTC
TTTAGGAGCCAATTTTCGTTGaccttttttctaagaaatagtTAATATCT
ATCAACTTCCATTCGAAATTGCAAATATTTCTCCAAAGCTTTAATTTGAT
ATCTTGGCAAACATCTAATGTTCTGAAAGTTTGCAGACCGAAATTCTGAA
AGAAATTCCTGAAAGcaacatttctaaaaagttgCATTTTCAGCCACAAT
TTTTCGAAGTAATTTCTGTCACTCAGGTCCAATTCGAACTGCAGATCTGA
TATTAAGCACTAACAATATTAggaataaaaagattttttaacatGTTTAT
AGAGGGTTGCTGCTACGAATTTTTAACTCACGCTATGTTGTTTATTTATA
TTTAGTATCACTTTATACGTTATGTAATTAATTTGGTTAAGAAAGTTTAT
AGACATCATTTTCCAAAAGTTCAAATTCGTCTAGATCAAGTCTCGctcaa
tttttaagattttttccagGTATATAAAATGATAAATCACTTTTGAGATA
GTTGTAATTTTTGTTGAATagtgaaatgatttttttgtttgtgtagtctt
ttttaatttcgaatttaacaaattgcaaaattttattGATTATTTAAAAG
AATAAATGTATAAAAACATGTTGGTCTGTTACTGTAGATAACAAGGGAG

Run BLAST on NCBI

transcript from alignment at scaffold_60:831254..835645+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071255 ID=TCONS_00071255|Name=TCONS_00071255|organism=Clytia hemisphaerica|type=transcript|length=4392bp|location=Sequence derived from alignment at scaffold_60:831254..835645+ (Clytia hemisphaerica)
CTGTTGTCTTTTTCTCTGTACACAAAATATTACATCCATCAACAGCAAGT
GCAGTCTTATATAGTTTGAAGGCTTTATATATATACATTAGGGGTGGTTT
CGGTGGTTTATTGAATAAAATTGGATCGTTGAGCTTTGAATAAAGGGAGT
GGTAGGTCAAAATAAGAATAgtgtaattaaaaaaaattttgttcagaaca
tttttaaaaatgtcataATTGTATATTGGATATCAGGCGGGGGACAGTCA
CTTATTCTACATGGTTATTATAATtattgttgttataaaaatctagcttt
gaaaaaattaacattCTTTGACTTGGACAACTGAAACTTTGGAAGGCAGA
CTCAATACACTGGTGGAAAAGCAGATATGGtaattaaaccttttttttca
aacacctccactggaactttttttttgaaacaacaAAATTGTACTTCCTT
ACCAAAAATGACTTGTACACTGTAAGACATAATTGATTACTAAGATTGTA
TGTATGAACTATTCAAATGGCTTTCAtccaaaaaagtttaaataagtttt
cttcaaatattttgttctttAAAACTTGACGtccatcagaaaaatttaag
tttgcaAATATGTCTGGaattcaaaatctaaaattgaGCAATAAGtcagc
aataaaaatttgactgcttatttttttttactttgtcacaagaaagaaaa
atttagGTCTTTAATTCCAGACAGCTACTAACAAACACAACAAGGGGATC
TGAGTTTTTAGGTGGagtgtattttcatttttcttaggGTCTTCTCAATT
TGATAAGAAAGATGAAGaagaataaaaacaaggaaatgcgTATTCTATTA
CTTGGTTTGGATAATGCTGGAAAAACAACCATTTTGAAGTCATTAGCCTC
AGAGGATATTAGTCATATCACTCCCACGCAGGTAATTAATATTCAGGATT
AGTTTGTTTTATGGCTCCTCTGTTTATAATTATCAACATTATGCAAAAAT
TAGTGTCACAAAAAAATCGTGCACAGTCAGCGGATCTGTGACTTTGATGc
ctgatttaatttttttttttttgaggttAATTATTGAGGTATGTGTTGTT
TCTACCATTTGACATGTTCTGCTTGATAATAATTTTTTGTATTGACTCTA
CATAAATTTTAATCAACAGGGTTTCAATATCAAATCAGTTCAATCATCAG
GAATCCTTCTAAACGTATGGGATATCGGAGGTCAAAAAACAATCAGACCA
TATTGGAgaaactattttgaaaatacaGATGTCCTTGtaatcaagatttt
ttttcatttctactGTAAAATGAATAAATTTAGCAATGGTTTTTAAAATC
TTGAGTTATGGCTTTCATCATTGTATCAtaaaataatctgaaaatattcC
CTGTTCTacctttgaaattaaaaatctgTGAAACcattttttgtcttttg
gtAGACCAGTCAACTGTTTTCAACATTTAGTGGACTAATAATATCTGTAT
TGTGTTCCTTTTTTCAGATATATGTTATTGATAGCGCTGATCAACAACGA
TTTGAAGAGTCTGGTTTCGTAAGATTTGTCACATTTatactttcaaaatt
tatactttcaaaatttaacGCATTCACTGATTACTATGATTTTAACTTTG
ATACAGAAATTTTTTCTTGCgttccttttgtatttttcagtttAAAATCT
ATACAAAATTCAATGTTCCAACGGGTAAATTTTTCGATTCGGACAGTGAA
TGTGTTAATTTTGTTTCAACCATTTTAACACTTTCATCCTTTAACTTTTC
TTCAAGATTTCCATTCTTATTTCATAATTCATCTTGAGAGTAAGCAGAGC
AGAGCTGAGAAATTCattgtatgttttttttttctaaattttagcAATTG
GCTGAACTGCTCGAAGAGGAAAAACTTCAAGGAGTTCCTGTTCTGgtttt
tgcaaataaacaaGATCTGATGAATGCTGCCAAATCAGATGTGGTAAGAA
TTGTTTTGTTTCATAATCTTTCGAGAGAAAACGCGTCAGCTTTCTATCCA
CCTTgtaatcagtcagaaaatatcaAGCACGATAGTCCCAATTGAACCAA
TGCAATCTGAGATTCTGAAATTAGGACATTCCCAGTCATTAAGCATGTAG
TTTAACTTCATCCTTCCACTGGAATGACTGTCGTTTAtccaaaaagattt
tgtctGTACACAATATTTTGGGGCATGATCCTCTTAACCATTCCATAGAA
AATTCAATCATGATTAgccttttttatgaaataggCAAAATTTAACAATT
CAGATGACCTTTGATACACAGCATACTTAAAAATAAAtcctaaatgaaaa
ttgaattctgTAAGGTGGTTgaaatttctttgtttatgGTTTCTAAATCA
CGAGAAGAAAATAGGTTTCAGTTGTGGGttgcaaattttttgaattgtAT
TTCGGGAACTACTGGGCCCCTAAATTTTCTGCACTTTTATCTCTATTATA
GTCTTGAAAacttacaatttttttatacaGATTATGGATACTATGTCATT
GAATGATATCAAGGATCGACCATGGCAAATACAAGCGTGTTCAGCTCTCT
CTGGTGAAGGTTTATCGGTGAGTTGTTTTGGTTTTAGTGTATACNTTCAG
CTCTCTCTGGTGAAGGTTTATCGGTGAGTTGTTTTGGTTTTAGTATATAC
TATTCTGATGCCCTAGGTTGAATCATCTATCATTATCAATCAAAAATTAC
TAGTTTTGTAATGAGAACAGACTAGATTTTGGTAAAAATCTAttaaacaa
attaagaacattcccAGCCAAAGCTTTCAATAAATGTTGATTCTAATTTA
GTCTCTTGTAAGTCGTTTTAAGTCAATAAAGTAAGCATATTAGGATACCT
TTAACtttaaaaatcgcaaaaaactaccTTTATCGAGCTCAGGTTTTTAT
GTTGAAAATGGGTCGAATCAtcaatgtaaaaataatagataaccaactac
ctctagaaggcacttctcccaagagaacaaccatgcttttcctattgaaa
tgagcactctattaaaaagctctgtgtgcagtgcgtgttatgcttttagc
tagattttgacacactttttgacatccactNNTTCTGTTATCTacaaaat
atatgtgtgatttgaaatgcgatatctcacgtatgAAAAGTGTATGAAAG
ttgcatgatacaaaataaacagatgaatgtttatagaacaataatatcta
attaaaaaattccttctgtgaggctgcctataggaaaatacactttttct
aacccaaattttggaaaaatatgcatcacgtgatcgattctgtccaatag
aaggttgcaaatgaagcaagtttttatttaattgcactttttacgatgca
aaatctcattaatatttttacaaccgtaacacggatgttttttgagaatc
aaggtaagttggttatctattatttttacatcgttggtcgGATATACTCA
AATCTTGGGTGTGCGGTTTGTTGGATAATTTTTGCCAATATagcattgat
tttttttcacctttttagCATGGGCTTGATTGGATTCAGAAGAACATCAA
ATCTTGAAAGTATGATGAATTTGAAAACTGCCATAAGTATCTGCCATAAA
CTATGGTGAAACATTGAATCAATCTTTGAAGTCTCCTCTACAGCTCTTTT
AAGAGTTATGACCTTTCTTGTTTTTGCACCTTTTTATTCACTCTTTAGGA
GCCAATTTTCGTTGaccttttttctaagaaatagtTAATATCTATCAACT
TCCATTCGAAATTGCAAATATTTCTCCAAAGCTTTAATTTGATATCTTGG
CAAACATCTAATGTTCTGAAAGTTTGCAGACCGAAATTCTGAAAGAAATT
CCTGAAAGcaacatttctaaaaagttgCATTTTCAGCCACAATTTTTCGA
AGTAATTTCTGTCACTCAGGTCCAATTCGAACTGCAGATCTGATATTAAG
CACTAACAATATTAggaataaaaagattttttaacatGTTTATAGAGGGT
TGCTGCTACGAATTTTTAACTCACGCTATGTTGTTTATTTATATTTAGTA
TCACTTTATACGTTATGTAATTAATTTGGTTAAGAAAGTTTATAGACATC
ATTTTCCAAAAGTTCAAATTCGTCTAGATCAAGTCTCGctcaatttttaa
gattttttccagGTATATAAAATGATAAATCACTTTTGAGATAGTTGTAA
TTTTTGTTGAATagtgaaatgatttttttgtttgtgtagtcttttttaat
ttcgaatttaacaaattgcaaaattttattGATTATTTAAAAGAATAAAT
GTATAAAAACATGTTGGTCTGTTACTGTAGATAACAAGGGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044291	XLOC_044291	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:831254..835645 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.641	60.0418	121.051	136.992	89.7304	51.7927	53.3682	58.8948	44.4613	38.131	31.8691	33.7998	15.1569	12.07	17.4268	19.8686	19.7514	18.7144	9.51747	12.8886	26.5712	22.489	31.0164	29.8953	22.104	26.5631	43.7889	28.9364	25.7734	23.0646

Blast

[Close]

BLAST of TCONS_00071255 vs. Swiss-Prot (Human)
Match: ARL3 (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.392e-70
Identity = 116/161 (72.05%), Postives = 140/161 (86.96%), Query Frame = 2

Query:  185 LLLGLDNAGKTTILKSLASEDISHITPTQGFNIKSVQSSGILLNVWDIGGQKTIRPYWRNYFENTDVLIYVIDSADQQRFEESGFQXXXXXXXXXXQGVPVLVFANKQDLMNAAKSDVIMDTMSLNDIKDRPWQIQACSALSGEGLSHGLDWIQKNIKS*K 667
            LLLGLDNAGKTT+LK LASEDISHITPTQGFNIKSVQS G  LNVWDIGGQ+ IRPYW+NYFENTD+LIYVIDSAD++RFEE+G +LAELLEEEKL  VPVL+FANKQDL+ AA +  I + ++L+ I+DR WQIQ+CSAL+GEG+  G++W+ KN+ + K
Sbjct:   21 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 181

The following BLAST results are available for this feature:

BLAST of TCONS_00071255 vs. Swiss-Prot (Human)

BLAST of TCONS_00071255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARL3	1.392e-70	72.05	ADP-ribosylation factor-like protein 3 OS=Homo sap...	[more]

You are here

TCONS_00071255 (transcript) - C. hemisphaerica