TCONS_00071250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071250
Unique NameTCONS_00071250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071250 ID=TCONS_00071250|Name=TCONS_00071250|organism=Clytia hemisphaerica|type=transcript|length=5568bp
tttgtcTTTTGGTCTTTAACGTCTTGCCTTTTTATGTGTGGATTTCTTGT
TGTTTGCGGTAAAAATGTCTTGGTATGAAGGGATTTATGACAAATGCAAA
TACGTTCAACAAGAATTCAAACGATGTTTTGGTTATTGGTCTGATCAAGT
TAATGGCAACAATGAAGCAGCGGATCATCAAAATGAATCAAAAGTTGcag
ttgaaaaaaataaaactgtcGAGGACGAGAAAGTTCCTGCATCAAAAACA
CATGTGAAAGTTTTATTGaagGATGACTTGATAACAAATCAATCAATTGA
TGTAATTGACGACCAAATCACAACTTCTGAACAAAATTTAGTTTGGATGG
TTTGGAAACAGTTGATGGCGGGCGGACTTGGCGGATTAGTGTCAAGGACT
ACAACCGCGCCTCTCGAtcgaatcaaaattttattgcaGGCGTCTGCTGG
CATAGGAAAAGAGAGGATTCCAATTTATGGAGTATTGAAGTGTACCATCA
AAGAAGGTGGTCTTCGTTCATTGTGGAGAGGTAATTTCATCAATTGTATG
AAAGTTGGACCCGAATCTGCGATTCGATTGTTGACATTTGAACAGATGAA
ATTATTGATTGGTCAAGGAGAAAGCGATTTGGAAATGTACCAACGATTTG
TTGCTGGGTCAATCGCTGGTATTATTGCACAAACATCCATCTACCCAATG
GAGGTTATAAGGACTCGGATGGCAGTGGCAAAAACAGGTGTCTATAAAAA
CTTTTACGATTGTACCAAAAAATTGAAACGCGAAATTGGTTGGCGTGGAT
TTTATAAGGGTATCATTCCTAGTTTGATTGGTATCGTCCCTAATGCTGGA
ATCGACCTCTGCATTTATGAGACAATGAAACAGAATTGGTTAAACAGTTT
TGCGGTCAAGCCTCAACGCCCATCTTTCACCTCTACATTGTTAGCTGGTG
GAATGTCAAGCCTGTGTTCCATGGCTGTTTGTTATCCGTTCGCATTGATT
AGAACGAACCTTCAAGCTGAAACAATCAAACCAGAGCTGAAAGGTTCAAA
TGAATTCATTACAATGAGCAACTCCTTCCGTGACATCGTCAAGACTCATG
GTATTCGTGGCTTATATCGTGGTATTGTACCAAACATGCTGAAAGTCGTT
CCTGCTTGTTCGATTAGTTATATGGTTTATGAACAAGCTCGTGATCAACT
AGGGCTTCATTCATAgggtttccagggggtaataCCTACTTGCACCAAGG
AGATCCGGGGATATTGACGCTATACACAATGTTGTAAAACTACCCCCGGA
TTACTTCTGGACCCGGAGCCCATGATTATTCGATAAACACAAATGATGAA
GCTTCTTTCTTCAAAGTCTTGAACATGTCAAATggccaaaaaaaactttt
ttgagtcCCGAgagtttggaaaaaattaattacctCACTCACCTATCCCC
TATAAACTTCTGTATTGTCTATGTAAAATGAGTCAAGTCATGATTGATGA
ATGGTATCCTGCAAATATTCAATCCTTCCGGAGAGTGCCGCCTCATGTAG
GATTTCAATCTACTGCTGCAAACTCCGACAAGTTATGTTGGTTGTGTCGC
TTTCGGAGAAAAGgTTCTCGTCCATCAACTAATTGCAACAAAGGTATTGA
TGATTTTACATTACTGTATATAAAACTATAGTATTTTCTCAAAGAataca
attatcaaaataaattaaaatacgtttataaatttacaatttgtgTTAAA
ATCTTCTAGCTATCAAAATGCCTTAGAGGTGTAAAGAATATAATTGAAAC
CTATAAAATAATGTAGCATGTCTAGGACAATAtgttacaaaaatattgac
tTAATGAATTATGCTGAGAATCAAGAGGTTTGAGCCTTAGGCAAGTCAGA
GCTTCacactgaatgaaaaaaaaaatgttgttcaCAGTGCGGAAATAATT
CTTCTGTGAAGCGCTAAACGAGATTTCTGAACTTTGAGCGTAACTTTATT
ACTAACCCCAGGAGCATTTTTCCACAccctcaaaagcaatttttAGTCTC
TAAAAAGTTTCCAACACCCTCCCTCTTGTATCGATCATGATTTTTACTCG
GACGTTCGTTATTCCTTTAGACTCGATAACTTTTTTAATATCATTTTGAG
GGTCCCTTGTAATTGTCACTTTAGTTGATTGCatatgacgaaaaaaaaac
tcgtaatattttctttgtgtttgtGATGGGGAATACCGCATTGCACAAAC
TATAGAAAGACTTCTCGCGGCGTTTTGAACATCCGCAACTTCGGAAAAAC
TTCATTCTGACATTTGAGCTAAAATAAAGATAGTGTTGGAAGATAGTAAC
AATCCCTAACCAATGAGGATACAGCATTTCAAAAGAAGAGAGGAGAGAAA
AAAAGCTTTCGTGAATCCTGGAAGGTGAATGGAAGGAGGAACTCGATTCA
TTTATAGCTATGGTGTTCAAGTTCTTATCATTAAAGCTAAAAACCTTCCC
AAAACGGCAGGATAGATCAGTATGAGGAAAGCATCTAAGATAGTTCATGC
AAATTTCCTTTTAGATACTCTCGCAAGAAGATAGGTATGTTTAACAAATC
ATATAGAGTTTCATATCATAGGTGGATTCTATAGAAATAACAGCTTTAAC
CTGTTCTGGAGTTTCATCATCAATGTTGACCATTTAATCATTTGGGCCAG
TGATATAATATGATCAAACCTTATCATTGTTATTTGTTTAttcatttgtt
tgtttgtttgtttgtttattcatttgtttgtttatttgtttggcCTTTGt
taatttgtttatttatttaggCATGGCCTAACCCTATAATAAGTTTTTAA
CCAGCTTTAACATCATTTCTCTTACTGGTACTAAATTCTCGAAAACTTGT
TTGGAGTTgggttttttcattttcattttcacatcaAAGTGCTATACACC
AATGATCGATCGAAACTTTAATTCACGGATACAGATTCATTAGCTTATAC
AAACTGATGATATGAAGCAATACGAGGGATTATATGATTTCAGTAACTAT
CCAAGCACTCATAAGTATTTTTCATTGGGTCTTGGCAAATTTAAAGACGA
ATTAGAATCGTTACCAATTGAAGAATTTGTAGGACTTCGTGGACTTTAct
tacagaaaaaaataacacaGTGAAAGAGGTTGAGAAAGCAAAAGGTGTAA
AGAAGTCGAAGAAGTGTGTTATTAAACAGAAAATGACTGATGCGGATACT
GCGGATACTTTTTGACCTTGAATGTAATTAAACATGTAGTTTATTTGCAT
taagaaaataattattttattgtACGTACGTCTGCCCAAGAAAAAAGGGG
AACGAATATAGGAAAACTAGTTAAAAATATAAGCAAACCCCAAAAATATA
CATGTCTATTGTCATGCGGATTTAATCAGAGGTTGCAACAGGATTCATTG
CACTTAACGGAGTCATTGTCATGGTAAAACGAGACAATTAGCTGACACAC
GAAAatcggttaatttaaaggacctccagggtaggtccaaaaaagtgATG
CAAGTGGCTCTAAGAGATTGTTTGGAAtgttgaaatgatttgaaacaCTC
CAAAAGATCACAGACAGCTAATCTCGCATGCTCCTCAGTCGGTCAGAGTC
TAAGACAAGAAAATCTAGCCACCTTCACCGTTAGAACCAAACCTCGCCAA
TGCCATGCCATTCCAACGACTATAAACTTttgatttgacgtcaaacagTA
AAATTGTATACTTGACGTCAATTAGAAATTTCAACCAATAAAATTCTATC
AAATAACACTTCAAAGAGTGATTCGACAACACTGCGACAAGAAAGTAAGT
CACACGCTAATTGATGTTTATCGTTTTGGATCGAATTTTTTGATATTGAT
TTGGCATCGTTTGGTTATCACCAGATCGAATTCATTCATTGGTATTGGAT
CAGACGAAACTACTTTGATATTGTTTTTGATTGACGAGAACTCATCGAAG
GATTCGGATACATACGGAATAACCAAACGTCCAGACGGTCATGGACCGTG
ACCAGTCGTCGTCCTCAGAAACGGCCTTAAAGGCCAAGGAATCGAGCCAA
ATACAGGCTCGAACTAACAACTCAGTTTTCAAGCGCAAAGAATCAGAAAT
TGCGCTCACTCCGCGGGAATCAATGATAATGCAAGCAAGGACCGCAAACA
TGATTCTGAAGAAAAGAGACTCGACACACATGAAGTCGTCCACACAATTA
CATATAAGAGAGTCTTCAATTTTGCAGCCTAGGGCGTCCACAATCTTGAA
CCGAAGGGCGTCAAGTGTCCTCCAAACAAGTGACACCAGCAATTCCCAAC
TTTGCTTGAAAGCAAAAGGAAAACGGCTTGAGCAGTATGAAACCCGTTTA
AATGATCAAAAGCAGGTACGTTAATGGGTAGAAAttgttactttttattt
ttacttaatTACGTGGCTTATCTCAGACTTCGGTCttgattttattattt
ggtATTCGTTCCCCACCACGTGTATCTTTCTTCTGATATTTCAATGTTTA
TTGAAAGATGGTGTCATTCTACATTCCTAGTCTGTATTTGGTTTCGAATT
ATGACTATTGTTATTGTACTGACTTCGTCATATTTCTTGAAGTCCCTCAA
ATGAAACGCAAACTCTCAGAGGAATAGTTTTGTTTTTCAGTGCAGAAAAA
ACAATAATGCAAGTTAATTATTTGATTTCATCAATTTGTTACTGATGGGT
TTTTGGTATTAAATATCCCCTTATTCTCTAATCGCAGATCATTTTACAGC
AAAGACGAAGAGTACGCGATTGTGCTGCTAAAATTAAgcaaaaagatgta
aaaattaACGATTTAAATGTCCAAATCGAAGAAAAAGCAGTTGAGTTCGA
AAAATACAAGGACGAGAACGAGACCAAAATTAAGGGCTTAGAAACAGAAG
TTTCATCCCTAAGGGAGAAGAACGCAGAGTGCCGCGACACTTTAAAATTT
CAAGGCcagtttttgaagaattttcaaaaagaactGACTGAAGAATTAGC
CACTCGTGACAATGAATTAAATGACGCTCGAGATGCCAAAAAAAAAAGCG
ACGATAAGATTGAGGTAAGGCGCGTTTTACTTGATAAGGAGGTGTGAATA
TAGGAGAAAACTCACTCCTGAAAAAAATCGcatcagaaaaaattaagtcG
ACCTAATCATAGCCTATCTCTAGCCTGCCACGcgactttttattttcatc
actTAGTGCGAAAAAGAGCCGTTTTCATCTGGTACTGGCAAACCGAATCA
TTACATAGTTTCACAACAGATTTACCAGTAGGTTGGGTGGAATTGACAAA
TTTCATTACTATTCTTTCTATAGGAGGTCAAAAATGTGCTCCAATCAAAA
GAGGAGAAGATCACTTCTTTAAATGATCGAATTGAAACTCTCACAGTGCT
TCTCAAAAAACAAGAGGGCGAAAATGAAGCTGCTCTCACAGAGAAAGATG
CGGATTTAGAAACTGCCAACGGTAAAATTTGTGAGCTTAAACAGGAGTTG
GTGAAAGCGGACGAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_60:687454..701353+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071250 ID=TCONS_00071250|Name=TCONS_00071250|organism=Clytia hemisphaerica|type=transcript|length=13900bp|location=Sequence derived from alignment at scaffold_60:687454..701353+ (Clytia hemisphaerica)
tttgtcTTTTGGTCTTTAACGTCTTGCCTTTTTATGTGTGGATTTCTTGT TGTTTGCGGTAAAAATGTCTTGGTATGAAGGGATTTATGACAAATGCAAA TACGTTCAACAAGAATTCAAACGATGTTTTGGTTATTGGTCTGATCAAGT TAATGGCAACAATGAAGCAGCGGATCATCAAAATGAATCAAAAGTTGcag ttgaaaaaaataaaactgtcGAGGACGAGAAAGTTCCTGCATCAAAAACA CATGTGAAAGTTTTATTGaaggtaaaatatttttcagatgaGGCGAGAGT ACTTTCTCAGTCCTCTGCTAAACTTTAAAAGACAATCAGGGCTTTATTAT TCTATAGCGGAACACACCGCCCTGTAACTCCTGATTCTATTTCAGTGATT ATTAGAAATCGAGGCGCTAATTAGAGAGATAAATAGAGAAAAAGCAGCAT TGTTTCTTTGATTTTCCAACAAAATTAATGCCAATTTTCTTGAacctaaa aataattttgcatTTCTTTCAGGATGACTTGATAACAAATCAATCAATTG ATGTAATTGACGACCAAATCACAACTTCTGAACAAAATTTAGTTTGGATG GTTTGGAAACAGTTGATGGCGGGCGGACTTGGCGGATTAGGTGAGTAGAG GGCGGTACTTTTGTCCGATTTCCCTGTATTATTGATAACTTAAACTTGAA ACCTAATAATATTTTCCAACATGGTAAAGTCTGCTATATTGGAATTGCAA TTGTCCCATAGGGAAAAACTTACACTTAGAGCCCTTAGCCTATCATTCTG TGTTCCATGAGACATCTTATATTTATGGAAACTATGGAAACGCTTGCAGT GACAAAGACGAGTTAGTTTCAGTCCCAGCCTTCGAGGTCGTATAAATTGA ATGTaattttcttcactttccaGTGTCAAGGACTACAACCGCGCCTCTCG AtcgaatcaaaattttattgcaGGTAAACTCTAAAATATTCAATATTGCT TAAATCATAATCAAAAACACTACTGGGGCCTNtctaaaatattcaatatg ctTAAATCATAATCAAAAACACTACTggggcctctttaaaaaaatttgaa atacatttCGACCAAATTAATTTTATATAGCCATGTAACAATCACATTAT GAGATATTTCCACCACCTCTAGaataatataaaaattatataaatttaaa tgaattatataaaaaacaccaatcaaactCTAGTTGAGTATAAATTGTTC TTTCAGAAATACTAATTAAAGAAAGGGTGTGGTGGCCACCTGAACCGGCA TCACAATAGGTCCATTAAGCCACCAAACCCAGAAGAAtctctacaatttt tttctttctacttAGGCGTCTGCTGGCATAGGAAAAGAGAGGATTCCAAT TTATGGAGTATTGAAGTGTACCATCAAAGAAGGTGGTCTTCGTTCATTGT GGAGAGGTAATTTCATCAATTGTATGAAAGTTGGACCCGAATCTGCGATT CGATTGTTGACATTTGAACAGGTAACGTCTTTTGATTTAGCAGTCCGATT TCCTCCCCATCTGTTTCTGTGAAAAAAATACGACATGaaataaaaatcat attttttcctcccgcaaggcactaagtgatatTGCCAGGGGTAAACTAGA GTGGTTGCCAAACCACCCAGTAACCGGTGTCATATTGGCTTTTGGATGGA CTCGGTGATGAAATACATACTCTGCCACATACATAGGTTGTATCAATAGG CAGTTGATGACTGGTTGTTTTGGTTGTCTTTACGATTTACATTCGCCATG ACACCTGAAAAccaaaagaataaaataaacaataaaaccACGTAAGACTT AAACAAGGGATTTTAGGGGGCTATTGCAATCTCTGGTTCGATCATAGGCC CAATATTTTAGGAAAAGATGTCTTGATCCGAATTACATAAAATTCCATTT AATTGGattatttgaattagagagaattTCCAATTTATTCCATAGATGAA ATTATTGATTGGTCAAGGAGAAAGCGATTTGGAAATGTACCAACGATTTG TTGCTGGGTCAATCGCTGGTATTATTGCACAAACATCCATCTACCCAATG GAGGTACGtttgttttgacattttgaagaaCTCTACTTTGTTAGGTGGTT AACAGATAACATAACACAGCTACTTCTGCCAAAATATATAAAACCCTTCA ATTGGATAGTGTTATTTTGTGAATATCATGTTCATGTTCCCTCGAAAATC AAAAGCACAAACATGACAAAAATTAAGGATAGTCCTGCGGTTCAGCCAGt ttgaaaaaagacaaaacCAAGCTGGCGCTTTATTCACGAAAAACTTCTCg tagagattttttttaaccGACCAGCTTGGTTCGTCTCTCgaattatttgg aaatttcttttttggtgGTAATGTTTTCATTTGATCGTTGAGCAAACTTT TGTATTGTAAGTACGGTAATCTTCGTCGTTATAACCATTCTCTCAAATTT TCAATCTCAGGTTATAAGGACTCGGATGGCAGTGGCAAAAACAGGTGTCT ATAAAAACTTTTACGATTGTACCAAAAAATTGAAACGCGAAATTGGTTGG CGTGGATTTTATAAGGGTATCATTCCTAGTTTGATTGGTATCGTCCCTAA TGCTGGAATCGACCTCTGCATTTATGAGGTAAGGTTATTGATTATTCAGG GAGATAGTACAAGAATTTTTCGATAAATCACACTACCCCAGTTTTCACCA CAAAAGTGTAAATTTGACTTAGATGGGACTTTGAAATTGGATTGTTTATC AAAAGAGACAAGTCATCGGACTATTTGatgaataataatttttttctcgc atcattcaatggaagaaaggaTTTGACCAGAGAAAGGCCTTGAAAGGGAG GAAGTAATCAATAGAAAGGAGAGTGGACCGAGTGGACCatcttctaaaaa aaaaacctaaaaatttaagaatttaaaTTTTAGCATGTGATTCAAATTCT TTACTTTATCCATTTTTAGACAATGAAACAGAATTGGTTAAACAGTTTTG CGGTCAAGCCTCAACGCCCATCTTTCACCTCTACATTGTTAGCTGGTGGA ATGTCAAGCCTGTGTTCCATGGCTGTTTGTTATCCGTTCGCATTGATTAG AACGAACCTTCAAGCTGAAAGTAAGTAAAATGAGGTGCAAAAGAATTTTT GTGACAAGGTGNACCTTCAAGCTGAAAGTAAGTATAAAATATGTACTTTC CTTATAATAGGCTTTTTGATAGAACAAAGGAAGTACTGAGGAATTTTTGT GACAAGGaacttgtgtgccaaatttcaattaaacaagctagatgctgaat ggacctacctgatgatgaaagttagatatcAATAAAGAGAAagatgaaaa caatcagtcagaaaacatagcgtttagcaaaaatgcataacgtattaatt tcatcattgattgttgacaGGGGAgagggatatttccggcattttcggcc ggaaaaaaatgtttttcgaaaatcgggctccgtcacattttaggtattgt cattttgcattagtgtgcaaaatttcataaaaaaatataaagtacggctc gagaaattcaagaaatactgtctttccggcgaaaataggttgttccggcg atttttaaatagttccggcttcaaaaatcaatttcattgaaaattgaaac atgctcgatggtgggcattgctattaataatgtttttgaatgaaaaaaca actaattataaggaaaaagtccaatgaaaatccagaaaaacggcgatttc cggcatatttccggcattttcggctggaaattttttttctcaaaaatcgg actcggccatgttttgggcattgttaatacgcatctttgagcaaaaaatc agaaaaaactaataataaaatctcgagaaaataccaaaaaaacagttttt ccggcatattccgacattttcggccggaaaaaaaatgtttttcgaaaatc aggttCTGTCAAATTTtggacattgccattttgcatctttgtgccaaaaa tcagaaaaaactaatgagccaatctcgagaaaagctggtaacagacgaac gaacggacgaacggacaacggttaatttataggacctccaggtaagtcca aaaaacccaacTAGATCAAAACTTGAGAGGTGTGTTGGTACAGAACCCCT AGTTTAATCCACCCCTACTAGGGCCTAGTACGGATAGGGTTAAAATCTTT GTGGATTTTGGAGTTAAAGAGTTctcataaaattatttttcactcCCTGT AGGATCAAAGTTACCTAAAAATTGAAGTAATTTACCGCATTCCATTTTCT TTGTATAAAAAACAGGTGTATCTCAAATTCCTCCATTTTTTCATAGCAAT CAAACCAGAGCTGAAAGGTTCAAATGAATTCATTACAATGAGCAACTCCT TCCGTGACATCGTCAAGACTCATGGTATTCGTGGCTTATATCGTGGTATT GTACCAAACATGCTGAAAGTCGTTCCTGCTTGTTCGATTAGTTATATGGT TTATGAACAAGCTCGTGATCAACTAGGGCTTCATTCATAgggtttccagg gggtaataCCTACTTGCACCAAGGAGATCCGGGGATATTGACGCTATACA CAATGTTGTAAAACTACCCCCGGATTACTTCTGGACCCGGAGCCCATGAT TATTCGATAAACACAAATGATGAAGCTTCTTTCTTCAAAGTCTTGAACAT GTCAAATggccaaaaaaaacttttttgagtcCCGAgagtttggaaaaaat taattacctCACTCACCTATCCCCTATAAACTTCTGTATTGTCTATGTAA AATGAGTCAAGTCATGATTGATGAATGGTATCCTGCAAATATTCAATCCT TCCGGAGAGTGCCGCCTCATGTAGGATTTCAATCTACTGCTGCAAACTCC GACAAGTTATGTTGGTTGTGTCGCTTTCGGAGAAAAGGTAATTtatgttt tatttctttttatctGTAAAATGGAAGGAAAAACAATCACAATTACAATG GTGaaaagaccttttcataaattacgtcacgaacatcacttgcctcgtat tcaagcAATTatcatggtgattatgtctcttgagacattcaATGATTGTT TTATACTCCAGGCGCTGGGGAAACTTTCGTATGCAAATCATTGCGTACAG TTGAAACCTTTTGATTCGTGTTATGTATGGTCTAAAGTTTCTAAAAAGTT TGGTCCCGTTCCTGTGGGCGGTGGCACCAAACCTGGGAACGCCCTTTTGG GcgtaaaaaattgttggttggGTGGTTTCGCAAAAAGTgaacatattata taccaatcgacgcgaaattttatactgatttaaaaaaaggttaacGTTAT GGGCAATAAAATCAAGTTCTCAAAAGTTATTAACGTTTGAATGTGGAAGG GTAGTTTAAAGCATTATCTACTCGTATTAGCCATTTAAACGTCATTAATG ACTCAAAAGAGCagatattgggcttttccagaaatagtccgtgtccccct gttgaggatatcggatatccaagGGGGTTAaccatttttgttcaaaagtg gatatccaggggggttaaatatctacaagggagcggatatccaggggtta aagtgtcttttcaagtaaaaaaaatacgatatccaggggtaagcatcttc ataagagaggatatccaggggattGAGCattttttaagagtggatattca ggggggtctttactaataaagttggatatccagggggtaaagtacctttt caagtaaaaaaaatacgatatccaggggtaagcatcttcataagagagga tatccaggggattGAGCattttttaagagtggatattcaggggggtcttt actaataaagttggatatccagggggttcgatacttcgaaaaatgaGTAT CCACAACAGTTTGGGtaagaatttttctggaaaagcccattatagATTAA CACCTTTTTCTTAACacttttttgtttctatttatttcacGATAATTGAA TTATTTATTTGAATCATAATTGAACCATTGATCTTTTTatctaaaatgtt ctttttcttAACGAATGGAAATGTCTCCTTACGCTGAAGAGGAATTTGAA TTTTGTGTAGTATTAACTAGTTTTGCAAGAAAGATGGTAAGTTGAAATTG AAGCATCCTCGAAAGAGTTTGAAACCTTCCAATCCAATGGTACACAAAGT AGCCATCAGTTTGCTCTTTGGAATACCTTTCTCAGCACCATCTACCCAGC TTTACGTGACCTTAAGCGATCCCATCGAGAAGGAAACTGGAAGAAGAACT TTCCGCCGTACAACGTGCAATACCACTTGTGTTTGCATTCGACCGCACAA ATTACAAACGTTGTTTGCCTATCTATTTCGAAGACAGTCTAACTCATGTC ACCAAAGTTCCACTAATTCATGAAGATTTCGTTCAGGGTGGTTTTGTTGC AAAACTATCAAACCGCAAAGTCAGTGCAGTACCCATGGATCAAGCGTTGG AATCACAATACAACAAACAAGCCAAAAATTCATCCGGAATAATTGGTATA AAGAGACGAAATGAAGTATGTAAATGGGATCTGATAAAGCACGAAAAGTC CAACCACTCCAATTTGCTTAGAAAATTTTCCGGCGTTAATGAGGAAGATG AATATTCATTACATCACGAGTTCTCCACCAAGAAAAGTGAAACAGTCGTG GCAATCCTTTTGATCTCGAGTTGAAATCAATAAGAAACCTTGCAACCGGT GCTACTCTTGAAGCCGAGTCATCTTCATTTCTGTTGACATGTGTCAAAAA GGTATCAATTATTCTTTAATCGTTTTACCTTGCCTCATTTCATATAAAAT ACtcttaaagaatattttaaataCCCTAGTACCCTTCGTCTATCATAATA CCTTCAGGTACGACATTATTTATTTGTTATTAAAGGGCGAGGAGGCAGCA TACTGCAAATTTGTCAAAGAACGTTTACAGAAAAAAGTTGTGAAGCTATT TGACAAAATTCTTAAGACCAGAAAATCCAAGAGAAAAAGCAAGAACTGGA CACCCCTGACGTAAACAAGGAGACTATTCACTTTCTTCGAATGATCGATT ATTCCCGATTGCAAAATCTTGACGTCTCAAGGCTCCTCAAACACGAAATT GTTTCAACGTCATTTTACCTGAAAAGTCTCCGAAGTCAGAGCTCACTAGG GCGTTAAAAGATCGTCTAGAGAAACCACATCCTACGGAACTACAACAGTC TGACCTGCCAACTGCCGTAGTCATCGATTTTATGGCGTACGCTCGAAAAG TTTCAACGAAAAAGATGCGTTTAGACACCTACGAGGACTTATTTGGTGTT TTTTGGAAGATGTTCTCAAGACTTTCAAAAGGATCAAGGAGAATCGACAT AGTATTTGATGTCTACTGGAGATGTAGCATTAAACAGAGTGAGCGCAATC AGCGAAGCAAACAAGACCCCATAGAAACACACATAATAAACGTGAAACAA CACCTCCCTGTTGACATGGATCGATTTTGATCATCTTCCGAGAATAAGAT GCGGTTCCAACAAGCTTTTATCAAGTGGGTGCAAGAAAATTATATAAACG ACACACCTGTTTATTTAGGTGGAGCCGGCGAAGAAAACGTCACCGCTTGC ATCAAAGTATGCTCCGTCAACCCGCCACATGATATCGAGTCCTTAAGGTG CAATCATGAAGAAGCTGATGACCGAATGATGTTTCACATTCACCAGAGGA TGATAACAACAGACAACAAAGAATGAGTCTGTCTAGCTTGAATTTTGCAa actataatttgtttttttttcgcattGAATTTGTTGCTATTCTCCGTCAA AACTTAAGTCTTCTAATCTAAATGAAACGTTCATTAAACATTTTATTCAT TTGAGAGCGAGAGCAAAGCAAAGTTGGCACTGCATTAAAAATGGCTTCAA CGGGAAACTTCTCTGGTTTAATTGCCTTCGGTCAGTCTGAGATTATTAAT CGACGTGTGCTCGAAGAACGCGGAGGGTTTTCTGATTCGGTGTGTCTCCA AAGATGTTAACTTCAAGACGTTCGATAGCCTTCGAAATTTTGTTTACTAC AAAAAGGCTACTGAGATAAACCTTGAAAGGCTGCCCTCAACATCTTCCAG TATCTACTGTCACATCAAATTGACGTTCCTGCAAGCATTTATCAGGTTGC ATGCTCCTTTTTTGGCAGAGATNTTCACATCAAATGGGCGTTCCTGCAAG CATTTATCTGGTTGCGTGCTCCTTTTTTGGCAGAGATGGATATCGGCCCG TTAAACTTTGGGTACAAGATGGAGGAGGAAGATGTTGATTGTGAGGATAT TATTCCTCAAATAGTCACTGATATTTTACCAGAAGACTTTCCTATGCCAT GTAAATGTGTTAAGTGTGCAAAGGAAACAGTCTGCTCCTGCCGAAAACAT GAATTGTCGTGTTGCAAATACTGTAACTGTAAGTCTGACTCTTGCAAAAA TCCTTATGTCAGGtgattttacttttgaaaactagTCAACCAAtattatt ctttatttaaaaattacCTTGTTTATTTATTGACTTGACTGAGTACTTCa gtatttcaaaacatttttacaaaatatttcaaagactAAGATAAGAACTT CGTAATGTAATTCTGTAATAactgcaaaattttgaaattttcaattccAC GAATGAGGATATCTAAAAAGCCAATAAAAGCTTTAACTTGAACTGAAATT GACCTAATAAATAGAATTCTATGATACGCCGACACGTAATTAGACATACA ATAAGTATATAGTTCGAACAAAGTTgtatatagaaaaaaatttgtaaaca cttatttaattattattttaataaaatattttttcacaacAACATGTTTG CCTGACACGTTTACCTTTGATATTTCAAatgcttataacttttgaacacT TGATCTTTTTGCCCATAAGgttaacctttttttaaatcagtatAAAGTTT cgcgtcgattggtatatagTATGACCACTTTTGGCGGAACCACCCAAGCA ACGATTTTTTACGCCCAAAAGGGCGTTTCCAGGGTTGGTGCCACCGCCCT CGGGAACGGgaccaaaatttttagaaactttAGACCATACATAACACGAA TCAAAAGGTTTCAACTGTACGCAGTGATTTGCATACGAAAGTTTCCCCAG CGCCTAGAGtattatgaataggaagtagttttaataaaatccgctgggag ttaattaccatggcaataatttcagaACGAGGAAAGTGAtattcgtaacg taatttatgaaaaggtctatttatcTTCAAGGGAAATTTTCGTAgaggtt tcttataaagatacaGCATACAAGTGCTCAAGAAGATTTTTTCTCTTACA AATAACGAAGGTACGAATGTTGGCGAAACTTTCACTACTGGTCAttcttt attcatgatatgcaccattgcacgTCTTCTGACATTCTATtgcggaccca atagctgattggttgtaatacgtcacttccaaccaatcagctgttgggtc catagaagacattgcagtggtgcatatcatgaattctgaAAAAACTTATC AAATTCGTAAATGatttatttcttcttcttttcaggTTCTCGTCCATCAA CTAATTGCAACAAAGGTATTGATGATTTTACATTACTGTATATAAAACTA TAGTATTTTCTCAAAGAatacaattatcaaaataaattaaaatacgttta taaatttacaatttgtgTTAAAATCTTCTAGCTATCAAAATGCCTTAGAG GTGTAAAGAATATAATTGAAACCTATAAAATAATGTAGCATGTCTAGGAC AATAtgttacaaaaatattgactTAATGAATTATGCTGAGAATCAAGAGG TTTGAGCCTTAGGCAAGTCAGAGCTTCacactgaatgaaaaaaaaaatgt tgttcaCAGTGCGGAAATAATTCTTCTGTGAAGCGCTAAACGAGATTTCT GAACTTTGAGCGTAACTTTATTACTAACCCCAGGAGCATTTTTCCACAcc ctcaaaagcaatttttAGTCTCTAAAAAGTTTCCAACACCCTCCCTCTTG TATCGATCATGATTTTTACTCGGACGTTCGTTATTCCTTTAGACTCGATA ACTTTTTTAATATCATTTTGAGGGTCCCTTGTAATTGTCACTTTAGTTGA TTGCatatgacgaaaaaaaaactcgtaatattttctttgtgtttgtGATG GGGAATACCGCATTGCACAAACTATAGAAAGACTTCTCGCGGCGTTTTGA ACATCCGCAACTTCGGAAAAACTTCATTCTGACATTTGAGCTAAAATAAA GATAGTGTTGGAAGATAGTAACAATCCCTAACCAATGAGGATACAGCATT TCAAAAGAAGAGAGGAGAGAAAAAAAGCTTTCGTGAATCCTGGAAGGTGA ATGGAAGGAGGAACTCGATTCATTTATAGCTATGGTGTTCAAGTTCTTAT CATTAAAGCTAAAAACCTTCCCAAAACGGCAGGATAGATCAGTATGAGGA AAGCATCTAAGATAGTTCATGCAAATTTCCTTTTAGATACTCTCGCAAGA AGATAGGTATGTTTAACAAATCATATAGAGTTTCATATCATAGGTGGATT CTATAGAAATAACAGCTTTAACCTGTTCTGGAGTTTCATCATCAATGTTG ACCATTTAATCATTTGGGCCAGTGATATAATATGATCAAACCTTATCATT GTTATTTGTTTAttcatttgtttgtttgtttgtttgtttattcatttgtt tgtttatttgtttggcCTTTGttaatttgtttatttatttaggCATGGCC TAACCCTATAATAAGTTTTTAACCAGCTTTAACATCATTTCTCTTACTGG TACTAAATTCTCGAAAACTTGTTTGGAGTTgggttttttcattttcattt tcacatcaAAGTGCTATACACCAATGATCGATCGAAACTTTAATTCACGG ATACAGATTCATTAGCTTATACAAACTGATGATATGAAGCAATACGAGGG ATTATATGATTTCAGTAACTATCCAAGCACTCATAAGTATTTTTCATTGG GTCTTGGCAAATTTAAAGACGAATTAGAATCGTTACCAATTGAAGAATTT GTAGGACTTCGTGGACTTTActtacagaaaaaaataacacaGTGAAAGAG GTTGAGAAAGCAAAAGGTGTAAAGAAGTCGAAGAAGTGTGTTATTAAACA GAAAATGACTGATGCGGATACTGCGGATACTTTTTGACCTTGAATGTAAT TAAACATGTAGTTTATTTGCATtaagaaaataattattttattgtACGTA CGTCTGCCCAAGAAAAAAGGGGAACGAATATAGGAAAACTAGTTAAAAAT ATAAGCAAACCCCAAAAATATACATGTCTATTGTCATGCGGATTTAATCA GAGGTTGCAACAGGATTCATTGCACTTAACGGAGTCATTGTCATGGTAAA ACGAGACAATTAGCTGACACACGAAAatcggttaatttaaaggacctcca gggtaggtccaaaaaagtgATGCAAGTGGCTCTAAGAGATTGTTTGGAAt gttgaaatgatttgaaacaCTCCAAAAGATCACAGACAGCTAATCTCGCA TGCTCCTCAGTCGGTCAGAGTCTAAGACAAGAAAATCTAGCCACCTTCAC CGTTAGAACCAAACCTCGCCAATGCCATGCCATTCCAACGACTATAAACT TttgatttgacgtcaaacagTAAAATTGTATACTTGACGTCAATTAGAAA TTTCAACCAATAAAATTCTATCAAATAACACTTCAAAGAGTGATTCGACA ACACTGCGACAAGAAAGTAAGTCACACGCTAATTGATGTTTATCGTTTTG GATCGAATTTTTTGATATTGATTTGGCATCGTTTGGTTATCACCAGATCG AATTCATTCATTGGTATTGGATCAGACGAAACTACTTTGATATTGTTTTT GATTGACGAGAACTCATCGAAGGATTCGGATACATACGGAATAACCAAAC GTCCAGACGGTCATGGACCGTGACCAGTCGTCGTCCTCAGAAACGGCCTT AAAGGCCAAGGAATCGAGCCAAATACAGGCTCGAACTAACAACTCAGTTT TCAAGCGCAAAGAATCAGAAATTGCGCTCACTCCGCGGGAATCAATGATA ATGCAAGCAAGGACCGCAAACATGATTCTGAAGAAAAGAGACTCGACACA CATGAAGTCGTCCACACAATTACATATAAGAGAGTCTTCAATTTTGCAGC CTAGGGCGTCCACAATCTTGAACCGAAGGGCGTCAAGTGTCCTCCAAACA AGTGACACCAGCAATTCCCAACTTTGCTTGAAAGCAAAAGGAAAACGGCT TGAGCAGTATGAAACCCGTTTAAATGATCAAAAGCAGGTACGTTAATGGG TAGAAAttgttactttttatttttacttaatTACGTGGCTTATCTCAGAC TTCGGTCttgattttattatttggtATTCGTTCCCCACCACGTGTATCTT TCTTCTGATATTTCAATGTTTATTGAAAGATGGTGTCATTCTACATTCCT AGTCTGTATTTGGTTTCGAATTATGACTATTGTTATTGTACTGACTTCGT CATATTTCTTGAAGTCCCTCAAATGAAACGCAAACTCTCAGAGGAATAGT TTTGTTTTTCAGTGCAGAAAAAACAATAATGCAAGTTAATTATTTGATTT CATCAATTTGTTACTGATGGGTTTTTGGTATTAAATATCCCCTTATTCTC TAATCGCAGATCATTTTACAGCAAAGACGAAGAGTACGCGATTGTGCTGC TAAAATTAAgcaaaaagatgtaaaaattaACGATTTAAATGTCCAAATCG AAGAAAAAGCAGTTGAGTTCGAAAAATACAAGGACGAGAACGAGACCAAA ATTAAGGTAGGAAGTTTGACGCCTTTTATgacatttcatattttttaaat ttgaagtttcttttaattttgttttagaaTTTTCCAAAATGAAACAACAG CTATTTTAGGGCTTCACTCGTATTGTAGACGAGTTTAAGAAGAAAGAGGG TACGTCAAAGAAAACTAATTATcccgaaaaacaaaacaaactagtTAATT AATTTGATCGTTCATTCAAAAACGTTtagacaacaacaacaacaacaact ctCCTTTTATGTTTAGGGCTTAGAAACAGAAGTTTCATCCCTAAGGGAGA AGAACGCAGAGTGCCGCGACACTTTAAAATTTCAAGGCcagtttttgaag aattttcaaaaagaactGACTGAAGAATTAGCCACTCGTGACAATGAATT AAATGACGCTCGAGATGCCAAAAAAAAAAGCGACGATAAGATTGAGGTAA GGCGCGTTTTACTTGATAAGGAGGTGTGAATATAGGAGAAAACTCACTCC TGAAAAAAATCGcatcagaaaaaattaagtcGACCTAATCATAGCCTATC TCTAGCCTGCCACGcgactttttattttcatcactTAGTGCGAAAAAGAG CCGTTTTCATCTGGTACTGGCAAACCGAATCATTACATAGTTTCACAACA GATTTACCAGTAGGTTGGGTGGAATTGACAAATTTCATTACTATTCTTTC TATAGGAGGTCAAAAATGTGCTCCAATCAAAAGAGGAGAAGATCACTTCT TTAAATGATCGAATTGAAACTCTCACAGTGCTTCTCAAAAAACAAGAGGG CGAAAATGAAGCTGCTCTCACAGAGAAAGATGCGGATTTAGAAACTGCCA ACGGTAAAATTTGTGAGCTTAAACAGGAGTTGGTGAAAGCGGACGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044289XLOC_044289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071250-exon-scaffold_60-1491911889:687454..687724TCONS_00071250-exon-scaffold_60-1491911889:687454..687724Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:687454..687724TCONS_00071250-exon-scaffold_60-1510915933:687454..687724Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:687454..687724TCONS_00071250-exon-scaffold_60-1575043694:687454..687724Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:687976..688093TCONS_00071250-exon-scaffold_60-1491911889:687976..688093Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:687976..688093TCONS_00071250-exon-scaffold_60-1510915933:687976..688093Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:687976..688093TCONS_00071250-exon-scaffold_60-1575043694:687976..688093Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:688377..688426TCONS_00071250-exon-scaffold_60-1491911889:688377..688426Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:688377..688426TCONS_00071250-exon-scaffold_60-1510915933:688377..688426Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:688377..688426TCONS_00071250-exon-scaffold_60-1575043694:688377..688426Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:688819..688974TCONS_00071250-exon-scaffold_60-1491911889:688819..688974Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:688819..688974TCONS_00071250-exon-scaffold_60-1510915933:688819..688974Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:688819..688974TCONS_00071250-exon-scaffold_60-1575043694:688819..688974Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:689449..689556TCONS_00071250-exon-scaffold_60-1491911889:689449..689556Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:689449..689556TCONS_00071250-exon-scaffold_60-1510915933:689449..689556Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:689449..689556TCONS_00071250-exon-scaffold_60-1575043694:689449..689556Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:689964..690131TCONS_00071250-exon-scaffold_60-1491911889:689964..690131Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:689964..690131TCONS_00071250-exon-scaffold_60-1510915933:689964..690131Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:689964..690131TCONS_00071250-exon-scaffold_60-1575043694:689964..690131Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:690473..690623TCONS_00071250-exon-scaffold_60-1491911889:690473..690623Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:690473..690623TCONS_00071250-exon-scaffold_60-1510915933:690473..690623Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:690473..690623TCONS_00071250-exon-scaffold_60-1575043694:690473..690623Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:691850..692440TCONS_00071250-exon-scaffold_60-1491911889:691850..692440Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:691850..692440TCONS_00071250-exon-scaffold_60-1510915933:691850..692440Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:691850..692440TCONS_00071250-exon-scaffold_60-1575043694:691850..692440Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:697139..700459TCONS_00071250-exon-scaffold_60-1491911889:697139..700459Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:697139..700459TCONS_00071250-exon-scaffold_60-1510915933:697139..700459Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:697139..700459TCONS_00071250-exon-scaffold_60-1575043694:697139..700459Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1491911889:700720..701353TCONS_00071250-exon-scaffold_60-1491911889:700720..701353Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1510915933:700720..701353TCONS_00071250-exon-scaffold_60-1510915933:700720..701353Clytia hemisphaericaexon
TCONS_00071250-exon-scaffold_60-1575043694:700720..701353TCONS_00071250-exon-scaffold_60-1575043694:700720..701353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:687454..701353 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0788635 0.096367 0 0.035412 0.0900714 0.226913 0.35917 0.360075 0.143465 0.373133 0.53528 0.0195662 0.110027 0.141795 0.267857 0.255125 1.84324 1.53526 0.230823 0.0976994 0.371287 0.414963 0.32267 0.364042 0.419181 0.667037 0.80137 0.517664 0.503398 0.377443
Blast
BLAST of TCONS_00071250 vs. Swiss-Prot (Human)
Match: SCMC2 (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 3.517e-86
Identity = 145/303 (47.85%), Postives = 199/303 (65.68%), Query Frame = 2
Query:  305 IDDQITTSEQNLVWMVWKQLMAGGLGGLVSRTTTAPLDRIKILLQASAGIGKERIPIYGVLKCTIKEGGLRSLWRGNFINCMKVGPESAIRLLTFEQMKLLIGQGESDLEMYQRFVAGSIAGIIAQTSIYPMEVIRTRMAVAKTGVYKNFYDCTKKLKREIGWRGFYKGIIPSLIGIVPNAGIDLCIYETMKQNWLNSFAVKPQRPSFTSTLLAGGMSSLCSMAVCYPFALIRTNLQAETIKPELKGSNEFITMSNSFRDIVKTHGIRGLYRGIVPNMLKVVPACSISYMVYEQARDQLGLHS 1213
            + D+ T  E+    M W+ L+AGG  G VSRT TAPLDR+K+L+Q  A      + I G     I+EGG RSLWRGN IN +K+ PESAI+ + +EQ+K L+G  +  L +++R VAGS+AG IAQ+SIYPMEV++TRMA+ KTG Y    DC +++    G   FYKG +P+++GI+P AGIDL +YET+K  WL  +AV    P     L  G MSS C     YP AL+RT +QA+     ++G+ E +TMS+ F+ I++T G  GLYRG+ PN +KV+PA SISY+VYE  +  LG+ S
Sbjct:  172 VPDEFTVEERQ-TGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHAS-RSNNMGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQA---SIEGAPE-VTMSSLFKHILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQS 468          
The following BLAST results are available for this feature:
BLAST of TCONS_00071250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCMC23.517e-8647.85Calcium-binding mitochondrial carrier protein SCaM... [more]
back to top