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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071218 ID=TCONS_00071218|Name=TCONS_00071218|organism=Clytia hemisphaerica|type=transcript|length=2118bpRun BLAST on NCBI protein sequence of TCONS_00071218-protein >TCONS_00071218-protein ID=TCONS_00071218-protein|Name=TCONS_00071218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp MSVLIETTIGDLVFDLCIEERPRSCLNFLKLCKVKYYNFCLFHSIRRNFIRun BLAST on NCBI transcript from alignment at scaffold_60:88834..115581+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071218 ID=TCONS_00071218|Name=TCONS_00071218|organism=Clytia hemisphaerica|type=transcript|length=26748bp|location=Sequence derived from alignment at scaffold_60:88834..115581+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:88834..115581+ >TCONS_00071218 ID=TCONS_00071218|Name=TCONS_00071218|organism=Clytia hemisphaerica|type=CDS|length=9870bp|location=Sequence derived from alignment at scaffold_60:88834..115581+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071218 vs. Swiss-Prot (Human)
Match: PPIL4 (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1) HSP 1 Score: 406.371 bits (1043), Expect = 2.818e-133 Identity = 207/320 (64.69%), Postives = 263/320 (82.19%), Query Frame = 3
Query: 1020 MSVLIETTIGDLVFDLCIEERPRSCLNFLKLCKVKYYNFCLFHSIRRNFIAQSGDPTGTGRGGESIFASLHGLQAKYYELETKPRIRHQSRGTISFVNNGNNMHGSQFFITLGDNLDFLDGKHTVFGKLAEGFDVLEKLNETICDDSHKPYQDIRVSHTIILDDPFDDPKGLLVPDRSPEPTKEQLESGGIAAXXXXXXXXXXXXXXXXXXXXXXXIGTK--ILETIGDIEDADEKPPENVLFVCKLNPVTNEDDLKIIFSRFGKILSCEIIKDKKTEDSLCYGFVEFKEIESCEKAYFKMDNVLIDDRRIHVDFCQSMA 1973
M+VL+ETT+GD+V DL EERPR+CLNFLKLCK+KYYN+CL H+++R+FI Q+GDPTGTGRGGESIF L+G QA ++E E PRI+H+ +GT+S VNNG++ HGSQF IT G+NLD+LDG HTVFG++ EG D+++K+NET D PYQDIR++HT+ILDDPFDDP LL+PDRSPEPT+EQL+SG I ADE++ + K + E+ E E + T+ +LE +GD+ DAD KPPENVLFVCKLNPVT ++DL+IIFSRFG I SCE+I+D KT +SLCY F+EF++ E CEKA+FKMDNVLIDDRRIHVDF QS+A
Sbjct: 1 MAVLLETTLGDVVIDLYTEERPRACLNFLKLCKIKYYNYCLIHNVQRDFIIQTGDPTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILDDPFDDPPDLLIPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQSVA 320 The following BLAST results are available for this feature:
BLAST of TCONS_00071218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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