TCONS_00071218-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071218-protein
Unique NameTCONS_00071218-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071218-protein ID=TCONS_00071218-protein|Name=TCONS_00071218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MSVLIETTIGDLVFDLCIEERPRSCLNFLKLCKVKYYNFCLFHSIRRNFI
AQSGDPTGTGRGGESIFASLHGLQAKYYELETKPRIRHQSRGTISFVNNG
NNMHGSQFFITLGDNLDFLDGKHTVFGKLAEGFDVLEKLNETICDDSHKP
YQDIRVSHTIILDDPFDDPKGLLVPDRSPEPTKEQLESGGIAADEDLSEK
KSKEEEQKELEDKELKIGTKILETIGDIEDADEKPPENVLFVCKLNPVTN
EDDLKIIFSRFGKILSCEIIKDKKTEDSLCYGFVEFKEIESCEKAYFKMD
NVLIDDRRIHVDFCQSMAKIQKHHRQGT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044273XLOC_044273Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071218TCONS_00071218Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
IPR000504RRM_dom
IPR029000Cyclophilin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..213
NoneNo IPR availableGENE3D3.30.70.330coord: 187..328
e-value: 4.6E-28
score: 97.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..210
NoneNo IPR availableCDDcd01921cyclophilin_RRMcoord: 4..169
e-value: 2.79412E-93
score: 276.53
NoneNo IPR availableCDDcd12235RRM_PPIL4coord: 235..317
e-value: 3.03506E-58
score: 183.618
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPRINTSPR00153CSAPPISMRASEcoord: 121..136
score: 54.84
coord: 42..54
score: 43.41
coord: 92..107
score: 45.45
coord: 16..31
score: 33.67
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPFAMPF00160Pro_isomerasecoord: 3..158
e-value: 8.5E-35
score: 120.3
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPROSITEPS50072CSA_PPIASE_2coord: 6..161
score: 22.934
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 239..312
e-value: 2.8E-21
score: 86.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 240..310
e-value: 8.5E-16
score: 57.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 238..316
score: 15.392
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 226..323
IPR029000Cyclophilin-like domainGENE3D2.40.100.10coord: 1..175
e-value: 8.1E-51
score: 171.8
IPR029000Cyclophilin-like domainSUPERFAMILY50891Cyclophilin-likecoord: 1..182

Blast
[Close]
BLAST of TCONS_00071218-protein vs. Swiss-Prot (Human)
Match: PPIL4 (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 9.441e-148
Identity = 208/320 (65.00%), Postives = 263/320 (82.19%), Query Frame = 0 
Query:    1 MSVLIETTIGDLVFDLCIEERPRSCLNFLKLCKVKYYNFCLFHSIRRNFIAQSGDPTGTGRGGESIFASLHGLQAKYYELETKPRIRHQSRGTISFVNNGNNMHGSQFFITLGDNLDFLDGKHTVFGKLAEGFDVLEKLNETICDDSHKPYQDIRVSHTIILDDPFDDPKGLLVPDRSPEPTKEQLESGGIAADEDLSEKKSKEEEQKE--LEDKELKIGTKILETIGDIEDADEKPPENVLFVCKLNPVTNEDDLKIIFSRFGKILSCEIIKDKKTEDSLCYGFVEFKEIESCEKAYFKMDNVLIDDRRIHVDFCQSMA 318
            M+VL+ETT+GD+V DL  EERPR+CLNFLKLCK+KYYN+CL H+++R+FI Q+GDPTGTGRGGESIF  L+G QA ++E E  PRI+H+ +GT+S VNNG++ HGSQF IT G+NLD+LDG HTVFG++ EG D+++K+NET  D    PYQDIR++HT+ILDDPFDDP  LL+PDRSPEPT+EQL+SG I ADE++ + K +  E+ E    +KE K    +LE +GD+ DAD KPPENVLFVCKLNPVT ++DL+IIFSRFG I SCE+I+D KT +SLCY F+EF++ E CEKA+FKMDNVLIDDRRIHVDF QS+A
Sbjct:    1 MAVLLETTLGDVVIDLYTEERPRACLNFLKLCKIKYYNYCLIHNVQRDFIIQTGDPTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVILDDPFDDPPDLLIPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQSVA 320
The following BLAST results are available for this feature:
BLAST of TCONS_00071218-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIL49.441e-14865.00Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo... [more]
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