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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071211 ID=TCONS_00071211|Name=TCONS_00071211|organism=Clytia hemisphaerica|type=transcript|length=2009bp
TTTTACCGAAAGTATtattaaaattgtttttctttttcttacagCTATAA
TAAATAATATTTAAGTAAGAATCAGCCgtaaaattatccaaaaagGAGCA
ATATGTCGTCTGACGAAGAAGATGGCCCACAactgaaaaaacaaagattg
tTTTATGGTAGTTTAGAAGACCAGGAGAGGGAAAGGATATTACGTGAGGA
GAAAGCAGCACAGGAATTGTTACGTGCACAGGGAAGTGAATCAAGCGAGG
AGTCAAGTGACGATGAGgattcaaagaaaaagaaaaagaaacgaaAGAAG
AAGAATCAAGAATCTGACGGCGAATCTGATAGTGATGAGGATACAGCAGT
TGATCGAGCTATGAAAGCTGGTAATATCAACATTGGTGATGTTGAAACCA
TGGAAATGACTCCTGATGCCAAAGCTGAACACCAACAAGAATTAATGGCA
CAATTTGAAAAGCGTAAAATAATCAAATCTATCACCGTGTCTACTGATGA
TAAAGCTGTCAAGGCTCGATTACGTGAACTTGGCCATCCTATTTGTCTCT
TTGGTGAAGGACCAGCTCAACGTCGCGATCGTTTAAGAGATTTGCTCTCA
GTCTTTGAGCAGCTTTTACCAGGATTTACTGCAACTAAGGAAGAATCTGA
GGAAGAAGAAGAGGCAGATGCTCCTGAGGAAGTATGGTACCATGAGGGGA
CCGAGGAGCTGAAAGCCTCACGGTTGTTTATGGCCAAGTACTCTGTCCCT
AGGGCAAGAGATCGTTTGATACAAGCCAAAAAGGACTTAAAAATGCCTGA
AACAGAGAAACTGAAAAAGTCGCAAGAAGTGCAAAGAAAGATGAGAGCAT
TGATTAATTTTTGCAGTCAGATTGGTGATAATCGTCCTCTATCGTATTGT
AATTTGTCACCTAACGGGAAGCTTCTGGCCACTGGATCTTGGAGTGGTTT
ATGTAAATTATGGTCGCTTCCTGATGGTAATGAAGTACGAACTCTGAAGG
GTCATAACGAGAGAGTTGGTGCTATTGTCTTTCACCCTCAATCCACAATA
AGTTTGGAAAGCTCTGCTGCTAATATGGTATCTTGTGGTGTAGATGGTGT
TGTTCAATTATGGAATCTAGAGGATGATGCTCCAATCGGGAAAATCGAAG
GCCACGAGGAGCGAGTTTCAAGCCTTGCTTTTCATCCTTCTGGCAGGTTT
CTAGGTACCTCGTGTTTTGATAAATCATGGCGTTTATGGGATTTGGAGCA
ACAGACTGAGGTTTTACATCAAGAGGGTCACGGTAAGGAAGTCTACAAGA
TTTGTTTCCAACAGGATGGTGCGTTGGCAGTCACAGGTGGTTACGATGCT
AGAGGACTGGTCTGGGATTTGCGTACTGGTCGTAACGTGTTTTCACTTGA
CGGACATTTGAAAAGGGTTCTTGCCGTTGATTTTCACTCAAACGGCTATC
AAGTTGCCACAGGAAGTGAGGACCAAAAATGTATGATTTGGGATTTGAGA
CAACAAAAATCGATTTACACTATTCCAGCTCATAATAATTTAATATCgca
tttgaaattttgtaataaCTTTTTGGTGACAGCTTCTTTTGATGGTGAAG
CGAAAGTCTGGTCATATCCTACATGGACACCATTGAAAACTTTATCAGGA
CATGAACAGAAAGTCACTTGTGTTGATGTTACTCAAGATGAGAATTTTAT
TGTAACAACTTCCTTTGATCGGACATTCAAATTATGGGGACCTGAGTTTT
TAGTgtaatattttataaatgtatGATGTTTTGGTCGTTTTAATACCGCG
GCTATGTTATGACATAAGACTAAAGGACATGATGTAAAGAAATCTTCAAC
CTTGGCCTTTTTGTTTATTTGCTTACCTTTTTTGACTTCATAATGTATTa
catttttaactctttttttaAAATAGAACAGTTTTTTAACGGTCGACGCG
AAAGATTTTAAATTGGAGATACTCTTTATTTACAATTTTAGTCTTATCAT
ATACGAGCT Run BLAST on NCBI transcript from alignment at scaffold_60:2216..4690+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071211 ID=TCONS_00071211|Name=TCONS_00071211|organism=Clytia hemisphaerica|type=transcript|length=2475bp|location=Sequence derived from alignment at scaffold_60:2216..4690+ (Clytia hemisphaerica)
TTTTACCGAAAGTATtattaaaattgtttttctttttcttacagCTATAA
TAAATAATATTTAAGTAAGAATCAGCCgtaaaattatccaaaaagGAGCA
ATATGTCGTCTGACGAAGAAGATGGCCCACAactgaaaaaacaaagattg
tTTTATGGTAGTTTAGAAGACCAGGAGAGGGAAAGGATATTACGTGAGGA
GAAAGCAGCACAGGAATTGTTACGTGCACAGGGAAGTGAATCAAGCGAGG
AGTCAAGTGACGATGAGgattcaaagaaaaagaaaaagaaacgaaAGAAG
AAGAATCAAGGTTTGTTTTACTACCCCAAGCTAAATATTTGGGTTTATTA
AGCTCTCCTTCTATTTTATAGGGGCATTATTCTTCCGGCTTGGAGACAAG
TTTTGCAGGTCTAAAGAAGAAATTATCTGTGAATATCTTTTATTGGGTGC
AGGGGCCTAATCATTGCAATCATAAAGTTTTCTTAGTGTTAGTTGGCCTA
AATTTAGTATTATAGAGGtcgtttcatagaggtcaatagacctgagaaat
acacttctataaattaaattaattaaagTATTTATTTTATTAGAGGCTTT
CTGTTAACTTAGGTAAACATAGTAATAATTTTGGTCCGGTCAAATCACTA
GAATCCGCAACAGTTTTCTTGCAGTGTTCATACAATTTGTTGGGAATTGT
TTGATAATTTCTACCTGagcaaaacttccaaaaaacATCAAACCATCAGG
TTTTAAACAGTTAGTTTTCTTTTCAGAATCTGACGGCGAATCTGATAGTG
ATGAGGATACAGCAGTTGATCGAGCTATGAAAGCTGGTAATATCAACATT
GGTGATGTTGAAACCATGGAAATGACTCCTGATGCCAAAGCTGAACACCA
ACAAGAATTAATGGCACAATTTGAAAAGCGTAAAATAATCAAATCTATCA
CCGTGTCTACTGATGATAAAGCTGTCAAGGCTCGATTACGTGAACTTGGC
CATCCTATTTGTCTCTTTGGTGAAGGACCAGCTCAACGTCGCGATCGTTT
AAGAGATTTGCTCTCAGTCTTTGAGCAGCTTTTACCAGGATTTACTGCAA
CTAAGGAAGAATCTGAGGAAGAAGAAGAGGCAGATGCTCCTGAGGAAGTA
TGGTACCATGAGGGGACCGAGGAGCTGAAAGCCTCACGGTTGTTTATGGC
CAAGTACTCTGTCCCTAGGGCAAGAGATCGTTTGATACAAGCCAAAAAGG
ACTTAAAAATGCCTGAAACAGAGAAACTGAAAAAGTCGCAAGAAGTGCAA
AGAAAGATGAGAGCATTGATTAATTTTTGCAGTCAGATTGGTGATAATCG
TCCTCTATCGTATTGTAATTTGTCACCTAACGGGAAGCTTCTGGCCACTG
GATCTTGGAGTGGTTTATGTAAATTATGGTCGCTTCCTGATGGTAATGAA
GTACGAACTCTGAAGGGTCATAACGAGAGAGTTGGTGCTATTGTCTTTCA
CCCTCAATCCACAATAAGTTTGGAAAGCTCTGCTGCTAATATGGTATCTT
GTGGTGTAGATGGTGTTGTTCAATTATGGAATCTAGAGGATGATGCTCCA
ATCGGGAAAATCGAAGGCCACGAGGAGCGAGTTTCAAGCCTTGCTTTTCA
TCCTTCTGGCAGGTTTCTAGGTACCTCGTGTTTTGATAAATCATGGCGTT
TATGGGATTTGGAGCAACAGACTGAGGTTTTACATCAAGAGGGTCACGGT
AAGGAAGTCTACAAGATTTGTTTCCAACAGGATGGTGCGTTGGCAGTCAC
AGGTGGTTACGATGCTAGAGGACTGGTCTGGGATTTGCGTACTGGTCGTA
ACGTGTTTTCACTTGACGGACATTTGAAAAGGGTTCTTGCCGTTGATTTT
CACTCAAACGGCTATCAAGTTGCCACAGGAAGTGAGGACCAAAAATGTAT
GATTTGGGATTTGAGACAACAAAAATCGATTTACACTATTCCAGCTCATA
ATAATTTAATATCgcatttgaaattttgtaataaCTTTTTGGTGACAGCT
TCTTTTGATGGTGAAGCGAAAGTCTGGTCATATCCTACATGGACACCATT
GAAAACTTTATCAGGACATGAACAGAAAGTCACTTGTGTTGATGTTACTC
AAGATGAGAATTTTATTGTAACAACTTCCTTTGATCGGACATTCAAATTA
TGGGGACCTGAGTTTTTAGTgtaatattttataaatgtatGATGTTTTGG
TCGTTTTAATACCGCGGCTATGTTATGACATAAGACTAAAGGACATGATG
TAAAGAAATCTTCAACCTTGGCCTTTTTGTTTATTTGCTTACCTTTTTTG
ACTTCATAATGTATTacatttttaactctttttttaAAATAGAACAGTTT
TTTAACGGTCGACGCGAAAGATTTTAAATTGGAGATACTCTTTATTTACA
ATTTTAGTCTTATCATATACGAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071211-exon-scaffold_60-1491911889:2216..2525 | TCONS_00071211-exon-scaffold_60-1491911889:2216..2525 | Clytia hemisphaerica | exon |
| TCONS_00071211-exon-scaffold_60-1510915933:2216..2525 | TCONS_00071211-exon-scaffold_60-1510915933:2216..2525 | Clytia hemisphaerica | exon |
| TCONS_00071211-exon-scaffold_60-1575043694:2216..2525 | TCONS_00071211-exon-scaffold_60-1575043694:2216..2525 | Clytia hemisphaerica | exon |
| TCONS_00071211-exon-scaffold_60-1491911889:2992..4690 | TCONS_00071211-exon-scaffold_60-1491911889:2992..4690 | Clytia hemisphaerica | exon |
| TCONS_00071211-exon-scaffold_60-1510915933:2992..4690 | TCONS_00071211-exon-scaffold_60-1510915933:2992..4690 | Clytia hemisphaerica | exon |
| TCONS_00071211-exon-scaffold_60-1575043694:2992..4690 | TCONS_00071211-exon-scaffold_60-1575043694:2992..4690 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:2216..4690 + |
Blast
BLAST of TCONS_00071211 vs. Swiss-Prot (Human)
Match: PRP4 (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2) HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0 Identity = 269/554 (48.56%), Postives = 364/554 (65.70%), Query Frame = 1
Query: 106 SSDEEDGPQLKKQRLFYGSLEDQERERILREEKAAQELLRAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVDRAMKAGNINIGDVETMEMTPDAKAEHQQELMAQFEKRKIIKSITVSTDDKAVKARLRELGHPICLFGEGPAQRRDRLRDLLSVFEQLLPGFTA----TKXXXXXXXXXXXXXXVWYHEGTEELKASRLFMAKYSVPRARDRLIQAKKDLKMPETEKLKKSQEVQRKMRALINFCSQIGDNRPLSYCNLSPNGKLLATGSWSGLCKLWSLPDGNEVRTLKGHNERVGAIVFHPQSTISLESSAANMVSCGVDGVVQLWNLEDDAPIGKIEGHEERVSSLAFHPSGRFLGTSCFDKSWRLWDLEQQTEVLHQEGHGKEVYKICFQQDGALAVTGGYDARGLVWDLRTGRNVFSLDGHLKRVLAVDFHSNGYQVATGSEDQKCMIWDLRQQKSIYTIPAHNNLISHLKF---CNNFLVTASFDGEAKVWSYPTWTPLKTLSGHEQKVTCVDVTQDENFIVTTSFDRTFKLWGPE 1746
+ D+ P +KK ++YGSLE++ERER+ + E +L G + ++AGNINI E E+ + +E Q E++A+FE+RK + I VSTDD VKA LR LG PI LFGEGPA+RR+RLR++LSV G A K++ + ++ + ++ WYHEG LK +RL++A YS+PRA RL +A+ ++PET + + QE+ + +R+L NFCSQIGD+RP+SYC+ SPN K+LAT WSGLCKLWS+PD N + TL+GHN VGAIVFHP+ST+SL+ N+ SC DG V+LW+L+ D P+ IEGH RV+ + +HPSGRFLGT+C+D+SWRLWDLE Q E+LHQEGH VY I F QDG+LA TGG DA G VWDLRTGR + L+GHLK + ++F NGY +ATGS D C +WDLRQ++ +YTIPAH NL++ +KF NFL+T ++D AK+W++P W+PLKTL+GHE KV +D++ D I T S+DRTFKLW E
Sbjct: 16 APDDLVAPVVKKPHIYYGSLEEKERERLAKGESG---ILGKDG--------------------------------------LKAGIEAGNINITSGEVFEIE-EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVV-----GTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 522
The following BLAST results are available for this feature:
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