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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071202 ID=TCONS_00071202|Name=TCONS_00071202|organism=Clytia hemisphaerica|type=transcript|length=1096bp
TATAcatataaaatgaaaaagtgaaaatctctCATTCCTTTAATCTTCGA
AATTATATTCTTCTCGAAAAgagaatctttttaaaaatgagaCTTCTCTT
AGCTTTGCTACCATTTTTATCGCTAGCAATCGCTGCTGAGCGCTCGTGCG
AATCTTACCTGACGAAGATCTCTAATTGGCCTGATGGTTATCGTGGTATC
TTAAACTTACCTGTATTAGAGCAAATGCATGGATGGAACATCAAGATTAC
TTTCACTCACAACGTACGTAACTTCGATACCGCTTACGGGGATGTCCGCC
GAACAAGTATGCAGGAATACAATATCAAAAACCGACCACATAATGGAAAT
CTTCGATCGCCCGGTACATTTAGATTTGATTTCACTATTCATCATGACCG
CTCAACCAAACAATGGCTTCGCATCAAATCCATACAATTTGGATCTTTTT
CGTGTGGCATGGGCGGTAACCCTACAACCATCGCACCAACAACCATTGCA
CCGACAACCAATATCCCGACGACTAATGCACCGACTACTAATCCACCGAC
AACGACAACGACCGAGCAAGCAATTCTTCCAACCTGTGAAGAATTCATCA
CAGTAATTCAAACGAAACCAACTTCAGAGCTTTTCGATCTTCGTTTACCA
ATCATAGAATCATCCAAAGGCTGGCTTCTCAACGTTGGATGGACTAAACC
CGCCAAATGTTTCCTTTTTAAAGGCCCTGTTTACATTACACACAAACAAA
TGCAAGAGTTCCAATTCAAGTCACGTTTTCCAGAGCCGTTAGAAGTTCAA
ACCATGTTCGTGCGACGTTTTAACGCAACGTTTATGGATACAGATCGGcc
ttttatcaatcatatcaagTTGGGTAAATTCGAATGCCGTGGCTACAACC
CATCCAATTAAAAGAGATTTATCATGGACGATCATAAAAgatctaaaaat
atttatgtCCACTGTAATTCGTGATTAAAAATCCAGTTTTTTGAGAATAA
GCAATTTTTGTAAGCAAGGATTTGTCGTAAAGAAATCAgaagaaatacac
gtttttctttctaatgcgttgtttcaacgtttttttaTAGTACCAG Run BLAST on NCBI protein sequence of TCONS_00071202-protein >TCONS_00071202-protein ID=TCONS_00071202-protein|Name=TCONS_00071202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MRLLLALLPFLSLAIAAERSCESYLTKISNWPDGYRGILNLPVLEQMHGW
NIKITFTHNVRNFDTAYGDVRRTSMQEYNIKNRPHNGNLRSPGTFRFDFT
IHHDRSTKQWLRIKSIQFGSFSCGMGGNPTTIAPTTIAPTTNIPTTNAPT
TNPPTTTTTEQAILPTCEEFITVIQTKPTSELFDLRLPIIESSKGWLLNV
GWTKPAKCFLFKGPVYITHKQMQEFQFKSRFPEPLEVQTMFVRRFNATFM
DTDRPFINHIKLGKFECRGYNPSN Run BLAST on NCBI transcript from alignment at scaffold_6:223329..224424 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071202 ID=TCONS_00071202|Name=TCONS_00071202|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at scaffold_6:223329..224424 (Clytia hemisphaerica)
CTGGTACTAtaaaaaaacgttgaaacaacgcattagaaagaaaaacgtgt
atttcttcTGATTTCTTTACGACAAATCCTTGCTTACAAAAATTGCTTAT
TCTCAAAAAACTGGATTTTTAATCACGAATTACAGTGGacataaatattt
ttagatcTTTTATGATCGTCCATGATAAATCTCTTTTAATTGGATGGGTT
GTAGCCACGGCATTCGAATTTACCCAActtgatatgattgataaaaggCC
GATCTGTATCCATAAACGTTGCGTTAAAACGTCGCACGAACATGGTTTGA
ACTTCTAACGGCTCTGGAAAACGTGACTTGAATTGGAACTCTTGCATTTG
TTTGTGTGTAATGTAAACAGGGCCTTTAAAAAGGAAACATTTGGCGGGTT
TAGTCCATCCAACGTTGAGAAGCCAGCCTTTGGATGATTCTATGATTGGT
AAACGAAGATCGAAAAGCTCTGAAGTTGGTTTCGTTTGAATTACTGTGAT
GAATTCTTCACAGGTTGGAAGAATTGCTTGCTCGGTCGTTGTCGTTGTCG
GTGGATTAGTAGTCGGTGCATTAGTCGTCGGGATATTGGTTGTCGGTGCA
ATGGTTGTTGGTGCGATGGTTGTAGGGTTACCGCCCATGCCACACGAAAA
AGATCCAAATTGTATGGATTTGATGCGAAGCCATTGTTTGGTTGAGCGGT
CATGATGAATAGTGAAATCAAATCTAAATGTACCGGGCGATCGAAGATTT
CCATTATGTGGTCGGTTTTTGATATTGTATTCCTGCATACTTGTTCGGCG
GACATCCCCGTAAGCGGTATCGAAGTTACGTACGTTGTGAGTGAAAGTAA
TCTTGATGTTCCATCCATGCATTTGCTCTAATACAGGTAAGTTTAAGATA
CCACGATAACCATCAGGCCAATTAGAGATCTTCGTCAGGTAAGATTCGCA
CGAGCGCTCAGCAGCGATTGCTAGCGATAAAAATGGTAGCAAAGCTAAGA
GAAGtctcatttttaaaaagattctcTTTTCGAGAAGAATATAATTTCGA
AGATTAAAGGAATGagagattttcactttttcattttatatgTATA Coding sequence (CDS) from alignment at scaffold_6:223329..224424 >TCONS_00071202 ID=TCONS_00071202|Name=TCONS_00071202|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_6:223329..224424 (Clytia hemisphaerica)
TTAATTGGATGGGTTGTAGCCACGGCATTCGAATTTACCCAActtgatat
gattgataaaaggCCGATCTGTATCCATAAACGTTGCGTTAAAACGTCGC
ACGAACATGGTTTGAACTTCTAACGGCTCTGGAAAACGTGACTTGAATTG
GAACTCTTGCATTTGTTTGTGTGTAATGTAAACAGGGCCTTTAAAAAGGA
AACATTTGGCGGGTTTAGTCCATCCAACGTTGAGAAGCCAGCCTTTGGAT
GATTCTATGATTGGTAAACGAAGATCGAAAAGCTCTGAAGTTGGTTTCGT
TTGAATTACTGTGATGAATTCTTCACAGGTTGGAAGAATTGCTTGCTCGG
TCGTTGTCGTTGTCGGTGGATTAGTAGTCGGTGCATTAGTCGTCGGGATA
TTGGTTGTCGGTGCAATGGTTGTTGGTGCGATGGTTGTAGGGTTACCGCC
CATGCCACACGAAAAAGATCCAAATTGTATGGATTTGATGCGAAGCCATT
GTTTGGTTGAGCGGTCATGATGAATAGTGAAATCAAATCTAAATGTACCG
GGCGATCGAAGATTTCCATTATGTGGTCGGTTTTTGATATTGTATTCCTG
CATACTTGTTCGGCGGACATCCCCGTAAGCGGTATCGAAGTTACGTACGT
TGTGAGTGAAAGTAATCTTGATGTTCCATCCATGCATTTGCTCTAATACA
GGTAAGTTTAAGATACCACGATAACCATCAGGCCAATTAGAGATCTTCGT
CAGGTAAGATTCGCACGAGCGCTCAGCAGCGATTGCTAGCGATAAAAATG
GTAGCAAAGCTAAGAGAAGtctcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071202-exon-scaffold_6-1491911889:223329..224424 | TCONS_00071202-exon-scaffold_6-1491911889:223329..224424 | Clytia hemisphaerica | exon |
| TCONS_00071202-exon-scaffold_6-1510915933:223329..224424 | TCONS_00071202-exon-scaffold_6-1510915933:223329..224424 | Clytia hemisphaerica | exon |
| TCONS_00071202-exon-scaffold_6-1575043694:223329..224424 | TCONS_00071202-exon-scaffold_6-1575043694:223329..224424 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:223329..224424 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008965 | Carb-bd_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030246 | carbohydrate binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0030246 |
carbohydrate binding |
Blast
The following BLAST results are available for this feature:
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