TCONS_00071194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071194
Unique NameTCONS_00071194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071194 ID=TCONS_00071194|Name=TCONS_00071194|organism=Clytia hemisphaerica|type=transcript|length=766bp
ATAGGTTGGGGACATGTCACATGCAAATCACGTCTTGGAAAGATAGTCAC
CATTTTCGGTTCTATCCTGACCATCCCTTTAACTACAGTAAATATCTACT
TTGCTTCATCAACAATCATCGACTTGATGCAGTTCTTGATCATAAGTTTC
GAGAAAAGTATTCTCAGACATAAAAGAATCATCGGTTTGAAAAGTAAAAC
TTTCATAACACAAATCGTTCTTTTCATTTTGTCGTTTTTCGTACAATGTT
ACGTAGACGAAGAATACGTAATAGATTCAAGAGGACGCCAGACACTCGAT
GTAGTGGATAATATttactttcatttcatttcaatgAGCACTATTGGATT
CGGTGATTACACTTTAGACTTTCATGGAGTAATGAATAGGTCATCTACAT
ACTTATATTTCACTCAAAcattatcaaattttaatttcttaattgGTATT
GTCCTGTTGGGAGCCATCATTAACTTCTTGGTTCAAACAAGTCAAGATCC
CACAAATAAGTTACAGAAAGACGACATTGTATTGGGTGAAGAGCAACAAG
ATTCGAACCAAGAGACCAAAGAACCTGAATCGACAGAGTAAAACTCCCCA
AAACGAGGCTATACTGATCAATTAGACTGTACCAAACCAAAGAAATAATA
TGGAAGTTCGTTTCAAAGGATTATTTTTCGAAATAagatatatttatata
ttttataattaAAAGCAATaactcgttggaaagataattttgtgtAGATT
Agctttaaagtttttg
Run BLAST on NCBI

protein sequence of TCONS_00071194-protein

>TCONS_00071194-protein ID=TCONS_00071194-protein|Name=TCONS_00071194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
IGWGHVTCKSRLGKIVTIFGSILTIPLTTVNIYFASSTIIDLMQFLIISF
EKSILRHKRIIGLKSKTFITQIVLFILSFFVQCYVDEEYVIDSRGRQTLD
VVDNIYFHFISMSTIGFGDYTLDFHGVMNRSSTYLYFTQTLSNFNFLIGI
VLLGAIINFLVQTSQDPTNKLQKDDIVLGEEQQDSNQETKEPESTE
Run BLAST on NCBI

transcript from alignment at scaffold_6:145299..146064

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071194 ID=TCONS_00071194|Name=TCONS_00071194|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at scaffold_6:145299..146064 (Clytia hemisphaerica)
caaaaactttaaagcTAATCTacacaaaattatctttccaacgagttATT
GCTTTtaattataaaatatataaatatatctTATTTCGAAAAATAATCCT
TTGAAACGAACTTCCATATTATTTCTTTGGTTTGGTACAGTCTAATTGAT
CAGTATAGCCTCGTTTTGGGGAGTTTTACTCTGTCGATTCAGGTTCTTTG
GTCTCTTGGTTCGAATCTTGTTGCTCTTCACCCAATACAATGTCGTCTTT
CTGTAACTTATTTGTGGGATCTTGACTTGTTTGAACCAAGAAGTTAATGA
TGGCTCCCAACAGGACAATACcaattaagaaattaaaatttgataatgTT
TGAGTGAAATATAAGTATGTAGATGACCTATTCATTACTCCATGAAAGTC
TAAAGTGTAATCACCGAATCCAATAGTGCTcattgaaatgaaatgaaagt
aaATATTATCCACTACATCGAGTGTCTGGCGTCCTCTTGAATCTATTACG
TATTCTTCGTCTACGTAACATTGTACGAAAAACGACAAAATGAAAAGAAC
GATTTGTGTTATGAAAGTTTTACTTTTCAAACCGATGATTCTTTTATGTC
TGAGAATACTTTTCTCGAAACTTATGATCAAGAACTGCATCAAGTCGATG
ATTGTTGATGAAGCAAAGTAGATATTTACTGTAGTTAAAGGGATGGTCAG
GATAGAACCGAAAATGGTGACTATCTTTCCAAGACGTGATTTGCATGTGA
CATGTCCCCAACCTAT

Coding sequence (CDS) from alignment at scaffold_6:145299..146064

>TCONS_00071194 ID=TCONS_00071194|Name=TCONS_00071194|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_6:145299..146064 (Clytia hemisphaerica)
TTACTCTGTCGATTCAGGTTCTTTGGTCTCTTGGTTCGAATCTTGTTGCT
CTTCACCCAATACAATGTCGTCTTTCTGTAACTTATTTGTGGGATCTTGA
CTTGTTTGAACCAAGAAGTTAATGATGGCTCCCAACAGGACAATACcaat
taagaaattaaaatttgataatgTTTGAGTGAAATATAAGTATGTAGATG
ACCTATTCATTACTCCATGAAAGTCTAAAGTGTAATCACCGAATCCAATA
GTGCTcattgaaatgaaatgaaagtaaATATTATCCACTACATCGAGTGT
CTGGCGTCCTCTTGAATCTATTACGTATTCTTCGTCTACGTAACATTGTA
CGAAAAACGACAAAATGAAAAGAACGATTTGTGTTATGAAAGTTTTACTT
TTCAAACCGATGATTCTTTTATGTCTGAGAATACTTTTCTCGAAACTTAT
GATCAAGAACTGCATCAAGTCGATGATTGTTGATGAAGCAAAGTAGATAT
TTACTGTAGTTAAAGGGATGGTCAGGATAGAACCGAAAATGGTGACTATC
TTTCCAAGACGTGATTTGCATGTGACATGTCCCCAACCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044250XLOC_044250Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071194-exon-scaffold_6-1491911889:145299..146064TCONS_00071194-exon-scaffold_6-1491911889:145299..146064Clytia hemisphaericaexon
TCONS_00071194-exon-scaffold_6-1510915933:145299..146064TCONS_00071194-exon-scaffold_6-1510915933:145299..146064Clytia hemisphaericaexon
TCONS_00071194-exon-scaffold_6-1575043694:145299..146064TCONS_00071194-exon-scaffold_6-1575043694:145299..146064Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071194-proteinTCONS_00071194-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:145299..146064 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191083	0	0.072118	0.211669	0	0	0.327556	0.306654	0.214696	0.0664839	0	0.0848401	1.73681	1.40776	0.108503	0.349322	0.525966	0.343063	4.13022	4.53453	0.246333	0.0901145	0.584245	1.26151	0.547086	0.671359	0.34935	0	0	0.0720278
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013099K_chnl_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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