TCONS_00071192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071192
Unique NameTCONS_00071192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071192 ID=TCONS_00071192|Name=TCONS_00071192|organism=Clytia hemisphaerica|type=transcript|length=270bp
GGTCCTGTGGCTGGTCACCCAGGCATCTTGTTAAATCCTGAGGAACAGTT
GTGCATGACAGAACTTGGGTTCACATGTGCAGCTGACCAGGTATAGTTTT
TCTACTTTTCGTCCTGCTTTCTTCCAAGAGATTTCCCAGCACCTCACAAA
TAAGGAACCCTTGTTTGTGGCACGTATTTGATTTCTTGGATCCATGGCTA
CTAAACCAACGGATGAAATTGAACCAGAAGGGGAACCAAATGAAGACGTA
CAGATTTGGAAACGAATAGT
Run BLAST on NCBI

transcript from alignment at scaffold_6:118942..119211

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071192 ID=TCONS_00071192|Name=TCONS_00071192|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_6:118942..119211 (Clytia hemisphaerica)
ACTATTCGTTTCCAAATCTGTACGTCTTCATTTGGTTCCCCTTCTGGTTC
AATTTCATCCGTTGGTTTAGTAGCCATGGATCCAAGAAATCAAATACGTG
CCACAAACAAGGGTTCCTTATTTGTGAGGTGCTGGGAAATCTCTTGGAAG
AAAGCAGGACGAAAAGTAGAAAAACTATACCTGGTCAGCTGCACATGTGA
ACCCAAGTTCTGTCATGCACAACTGTTCCTCAGGATTTAACAAGATGCCT
GGGTGACCAGCCACAGGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044248XLOC_044248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071192-exon-scaffold_6-1491911889:118942..119211TCONS_00071192-exon-scaffold_6-1491911889:118942..119211Clytia hemisphaericaexon
TCONS_00071192-exon-scaffold_6-1510915933:118942..119211TCONS_00071192-exon-scaffold_6-1510915933:118942..119211Clytia hemisphaericaexon
TCONS_00071192-exon-scaffold_6-1575043694:118942..119211TCONS_00071192-exon-scaffold_6-1575043694:118942..119211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:118942..119211 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.37635	0.633485	2.40636	4.25913	3.73812	5.44207	7.78361	3.495	5.01921	6.20635	2.71778	4.29237	0.438946	0.928284	0	0.872123	0	0.125744	2.09013	0	0.0334237	0	3.46204	2.49641	0	3.15835	0	1.1245
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top