TCONS_00071190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071190
Unique NameTCONS_00071190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071190 ID=TCONS_00071190|Name=TCONS_00071190|organism=Clytia hemisphaerica|type=transcript|length=836bp
GTTCGAGTACTTTAGCCACATTTTAACCCATATTCTACACAACAACTGTG
TTATAATATATCAACAGATAGCTTTTGTTCTATTCTTCTCAGTTCTTGAG
AATATTGTTTCTCAAATTAAATGTGCACAAGTGTGGCTAATAATTTGACA
GGTCTGAAAAGAAGGGTCGTATAAAACCGCATAAAATCCCAAAACAACTA
CTAGCTTGCTATGAAATTACAATGATGTGTTTTGTACAGCTTCTTAGTAT
CCCTCTACTAAGTTTTTGTTATTGTGATTGATGTGTGAAGTGATGTGGCT
TAGTTTCAAAAAGTAAGGGTAATTTATCCTTAAAGTGGATTTTAACCAca
atttttcacgttttttgtttcaattcgaGTTTATTGATATCTTACCTCAT
AACCTTTCAAGAAACATATTTTACATAATATTTTCACaactattttagtt
tttatcagTTAAGATAGTTTTGTAACTATTTTTAAGTTTACTTCAAAGAC
ACCACAATATTTCACACTTTTGGTCAAAAACTGTTTCACATAATTATACT
GGGCAATACTATGGGGCATCTTCAGCTTAAATTCATAGATCTTTTGGTGA
TAGTCGCTTTTGTGTAAGAATGAGTCTAACTTTCCATAAACATACAAAAG
AGTCCTTTTTAGCCCCAATAATTCACATTTTGGAAAAGTTTTGGTTCAGG
CAGCTTAGTGAAAGGGTAAAGAATCCTCCCCTAAAACTTTACAAGATCAA
ACCCATTTTTCGTTAATGTAtgtcaattttctcaaaactatagttttttg
tgaattttcattttgtcattcttttttgaacacgAT
Run BLAST on NCBI

transcript from alignment at scaffold_6:110064..110899

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071190 ID=TCONS_00071190|Name=TCONS_00071190|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at scaffold_6:110064..110899 (Clytia hemisphaerica)
ATcgtgttcaaaaaagaatgacaaaatgaaaattcacaaaaaactatagt
tttgagaaaattgacaTACATTAACGAAAAATGGGTTTGATCTTGTAAAG
TTTTAGGGGAGGATTCTTTACCCTTTCACTAAGCTGCCTGAACCAAAACT
TTTCCAAAATGTGAATTATTGGGGCTAAAAAGGACTCTTTTGTATGTTTA
TGGAAAGTTAGACTCATTCTTACACAAAAGCGACTATCACCAAAAGATCT
ATGAATTTAAGCTGAAGATGCCCCATAGTATTGCCCAGTATAATTATGTG
AAACAGTTTTTGACCAAAAGTGTGAAATATTGTGGTGTCTTTGAAGTAAA
CTTAAAAATAGTTACAAAACTATCTTAActgataaaaactaaaatagttG
TGAAAATATTATGTAAAATATGTTTCTTGAAAGGTTATGAGGTAAGATAT
CAATAAACtcgaattgaaacaaaaaacgtgaaaaattgTGGTTAAAATCC
ACTTTAAGGATAAATTACCCTTACTTTTTGAAACTAAGCCACATCACTTC
ACACATCAATCACAATAACAAAAACTTAGTAGAGGGATACTAAGAAGCTG
TACAAAACACATCATTGTAATTTCATAGCAAGCTAGTAGTTGTTTTGGGA
TTTTATGCGGTTTTATACGACCCTTCTTTTCAGACCTGTCAAATTATTAG
CCACACTTGTGCACATTTAATTTGAGAAACAATATTCTCAAGAACTGAGA
AGAATAGAACAAAAGCTATCTGTTGATATATTATAACACAGTTGTTGTGT
AGAATATGGGTTAAAATGTGGCTAAAGTACTCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044246XLOC_044246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071190-exon-scaffold_6-1491911889:110064..110899TCONS_00071190-exon-scaffold_6-1491911889:110064..110899Clytia hemisphaericaexon
TCONS_00071190-exon-scaffold_6-1510915933:110064..110899TCONS_00071190-exon-scaffold_6-1510915933:110064..110899Clytia hemisphaericaexon
TCONS_00071190-exon-scaffold_6-1575043694:110064..110899TCONS_00071190-exon-scaffold_6-1575043694:110064..110899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:110064..110899 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.622417	0.93802	1.79386	2.18334	0.915669	0.241191	0.363734	0.544837	0.728582	0.472492	2.15063	0.414526	0.376318	0.412961	0.653744	0.206882	0.212384	0.17415	1.40229	0.944129	0.930035	0.960647	0.194632	0	0.243004	0.379532	0.387935	0.165606	0.376818	0.319932
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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