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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071187 ID=TCONS_00071187|Name=TCONS_00071187|organism=Clytia hemisphaerica|type=transcript|length=841bp
CTTTACTAcaattatttacaaaaaagaaTTAAATGGCAATCTTATAGATA
GAACTACTGTATCAGGACCGTCATCAAACTTCAATGATTCTTGAATATAT
ACAAATCGTTCCTTTATACATCTCATTGGGACAAAGGCGTTTTTTGAATT
CCTTTCAAAAGTTGTATTCCAAACTGTGATGTTTGAGTTTTTACCgtaat
gaaatttcttcttttttgatttcttaATAGCTTCCTCTGTCCcttctttg
atttcaaaatccTTAAACCAGTCCAACTGAGCTACCCAATATTTGTTCAC
CTTCCCACTTACTGTAGCCTGAacttcaaaaatgttcttaataattGCTG
GGCGGAAGCTGAATCCAGTATCATCATGCCAGCGAGCAATAACATAACTG
TAAGGAGATAATCCACGGTATTGGTTGcatgcaaaaatttgatttccTAT
TTTCATTCTAAGTGCACTGCGTCCGACAGATGAAATACACTTAAGACCTT
CAAATTTACAATATGAGGTGAACATTTCATGAAGCTCTTCCAGTGTCTCA
GAGTCAAATCTTGCTCTACGGCTTGCcgatttcaaaatttcgaagCTAGA
ATCAAAAGAAGCTTCGTTGATAACTTCACTTTCCAATACACGCAGGATGT
TAGTGTAATCATATTCTCTTTCATCTTGTGCTTCGTCGGTATTGTTTTCT
TGCAGCTTTGAAAACGTTACAAACTTCCTCATTAACTGAACAGAAATTGA
ATGACTATTCGTGTGGAAGGAGCCCATTATACCATTGTACCTTAAAGAAG
AGAAGAGCTACAAATTGAGTATACgttttatctatttttct Run BLAST on NCBI protein sequence of TCONS_00071187-protein >TCONS_00071187-protein ID=TCONS_00071187-protein|Name=TCONS_00071187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MGSFHTNSHSISVQLMRKFVTFSKLQENNTDEAQDEREYDYTNILRVLES
EVINEASFDSSFEILKSASRRARFDSETLEELHEMFTSYCKFEGLKCISS
VGRSALRMKIGNQIFACNQYRGLSPYSYVIARWHDDTGFSFRPAIIKNIF
EVQATVSGKVNKYWVAQLDWFKDFEIKEGTEEAIKKSKKKKFHYGKNSNI
TVWNTTFERNSKNAFVPMRCIKERFVYIQESLKFDDGPDTVVLSIRLPFN
SFL Run BLAST on NCBI transcript from alignment at scaffold_6:31631..32471 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071187 ID=TCONS_00071187|Name=TCONS_00071187|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at scaffold_6:31631..32471 (Clytia hemisphaerica)
agaaaaatagataaaacGTATACTCAATTTGTAGCTCTTCTCTTCTTTAA
GGTACAATGGTATAATGGGCTCCTTCCACACGAATAGTCATTCAATTTCT
GTTCAGTTAATGAGGAAGTTTGTAACGTTTTCAAAGCTGCAAGAAAACAA
TACCGACGAAGCACAAGATGAAAGAGAATATGATTACACTAACATCCTGC
GTGTATTGGAAAGTGAAGTTATCAACGAAGCTTCTTTTGATTCTAGcttc
gaaattttgaaatcgGCAAGCCGTAGAGCAAGATTTGACTCTGAGACACT
GGAAGAGCTTCATGAAATGTTCACCTCATATTGTAAATTTGAAGGTCTTA
AGTGTATTTCATCTGTCGGACGCAGTGCACTTAGAATGAAAATAggaaat
caaatttttgcatgCAACCAATACCGTGGATTATCTCCTTACAGTTATGT
TATTGCTCGCTGGCATGATGATACTGGATTCAGCTTCCGCCCAGCaatta
ttaagaacatttttgaagtTCAGGCTACAGTAAGTGGGAAGGTGAACAAA
TATTGGGTAGCTCAGTTGGACTGGTTTAAggattttgaaatcaaagaagG
GACAGAGGAAGCTATtaagaaatcaaaaaagaagaaatttcattacGGTA
AAAACTCAAACATCACAGTTTGGAATACAACTTTTGAAAGGAATTCAAAA
AACGCCTTTGTCCCAATGAGATGTATAAAGGAACGATTTGTATATATTCA
AGAATCATTGAAGTTTGATGACGGTCCTGATACAGTAGTTCTATCTATAA
GATTGCCATTTAAttcttttttgtaaataattgTAGTAAAG Coding sequence (CDS) from alignment at scaffold_6:31631..32471 >TCONS_00071187 ID=TCONS_00071187|Name=TCONS_00071187|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_6:31631..32471 (Clytia hemisphaerica)
ATGGGCTCCTTCCACACGAATAGTCATTCAATTTCTGTTCAGTTAATGAG
GAAGTTTGTAACGTTTTCAAAGCTGCAAGAAAACAATACCGACGAAGCAC
AAGATGAAAGAGAATATGATTACACTAACATCCTGCGTGTATTGGAAAGT
GAAGTTATCAACGAAGCTTCTTTTGATTCTAGcttcgaaattttgaaatc
gGCAAGCCGTAGAGCAAGATTTGACTCTGAGACACTGGAAGAGCTTCATG
AAATGTTCACCTCATATTGTAAATTTGAAGGTCTTAAGTGTATTTCATCT
GTCGGACGCAGTGCACTTAGAATGAAAATAggaaatcaaatttttgcatg
CAACCAATACCGTGGATTATCTCCTTACAGTTATGTTATTGCTCGCTGGC
ATGATGATACTGGATTCAGCTTCCGCCCAGCaattattaagaacattttt
gaagtTCAGGCTACAGTAAGTGGGAAGGTGAACAAATATTGGGTAGCTCA
GTTGGACTGGTTTAAggattttgaaatcaaagaagGGACAGAGGAAGCTA
TtaagaaatcaaaaaagaagaaatttcattacGGTAAAAACTCAAACATC
ACAGTTTGGAATACAACTTTTGAAAGGAATTCAAAAAACGCCTTTGTCCC
AATGAGATGTATAAAGGAACGATTTGTATATATTCAAGAATCATTGAAGT
TTGATGACGGTCCTGATACAGTAGTTCTATCTATAAGATTGCCATTTAAt
tcttttttgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071187-exon-scaffold_6-1491911889:31631..32471 | TCONS_00071187-exon-scaffold_6-1491911889:31631..32471 | Clytia hemisphaerica | exon |
| TCONS_00071187-exon-scaffold_6-1510915933:31631..32471 | TCONS_00071187-exon-scaffold_6-1510915933:31631..32471 | Clytia hemisphaerica | exon |
| TCONS_00071187-exon-scaffold_6-1575043694:31631..32471 | TCONS_00071187-exon-scaffold_6-1575043694:31631..32471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:31631..32471 . |
Blast
The following BLAST results are available for this feature:
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