TCONS_00071176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071176
Unique NameTCONS_00071176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071176 ID=TCONS_00071176|Name=TCONS_00071176|organism=Clytia hemisphaerica|type=transcript|length=443bp
ttaaaaatttatatttcaatgaaaaactATAACCTGCTATACAATATTTC
CTACAAATTTTACTCTCAATAAGGGTGACCAAGCTTCTTTGCGCATGCGT
GCGTACAGATTGGTTTTGGTCTTTTGGCATAACTTGATGCACCGAATGCA
TTGACAGCCTTGTAATAGATGTTTGCTCCATGTAGGCACGCTTTGTGCTT
ATCCTGGATGTATCGCCAGGCTACAACCATCATAAAGATTTCGAAAGCTT
CTTTCTTCAGGTCAATACCGTCTTGTGAAGTTAGGCCAGCTTTCTTGACA
GCGTTTTGTAGGATACTTCGAAGTTTGTCTTTTTGGAATGTTACGTGACT
ATCAGCGAATTGAGTTGTCGTGTTGCAGTAGTTTCTCAGATCTTTAAGAA
AGGCTAAATCACATTCGGCTCGTGTCCAGTTGTTGGTTTTCCC
Run BLAST on NCBI

transcript from alignment at scaffold_6:233861..234366-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071176 ID=TCONS_00071176|Name=TCONS_00071176|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_6:233861..234366- (Clytia hemisphaerica)
TTAAAAATTTATATTTCAATGAAAAACTATAACCTGCTATACAATATTTC
CTACAAATTTTACTCTCAATAAGGGTGACCAAGCTTCTTTGCGCATGCGT
GCGTACAGATTGGTTTTGGTCTTTTGGCATAACTTGATGCACCGAATGCA
TTGACAGCCTTGTAATAGATGTTTGCTCCATGTAGGCACGCTATGTGTNA
TGCACCAAATGCATTGACAGCCTTGTAGTAGAGGTTTGCTCCATGTAGGC
ACGCTTTGTGCTTATCCTGGATGTATCGCCAGGCTACAACCATCATAAAG
ATTTCGAAAGCTTCTTTCTTCAGGTCAATACCGTCTTGTGAAGTTAGGCC
AGCTTTCTTGACAGCGTTTTGTAGGATACTTCGAAGTTTGTCTTTTTGGA
ATGTTACGTGACTATCAGCGAATTGAGTTGTCGTGTTGCAGTAGTTTCTC
AGATCTTTAAGAAAGGCTAAATCACATTCGGCTCGTGTCCAGTTGTTGGT
TTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044237XLOC_044237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071176-exon-scaffold_6-1575043694:234182..234366TCONS_00071176-exon-scaffold_6-1575043694:234182..234366Clytia hemisphaericaexon
TCONS_00071176-exon-scaffold_6-1575043694:233861..234118TCONS_00071176-exon-scaffold_6-1575043694:233861..234118Clytia hemisphaericaexon
TCONS_00071176-exon-scaffold_6-1510915933:234182..234366TCONS_00071176-exon-scaffold_6-1510915933:234182..234366Clytia hemisphaericaexon
TCONS_00071176-exon-scaffold_6-1510915933:233861..234118TCONS_00071176-exon-scaffold_6-1510915933:233861..234118Clytia hemisphaericaexon
TCONS_00071176-exon-scaffold_6-1491911889:234182..234366TCONS_00071176-exon-scaffold_6-1491911889:234182..234366Clytia hemisphaericaexon
TCONS_00071176-exon-scaffold_6-1491911889:233861..234118TCONS_00071176-exon-scaffold_6-1491911889:233861..234118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:233861..234366 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.370709	0.00252981	0	0	0	0.621451	0	0.385374	0.262373	0.392444	0	14.5644	14.9834	16.9207	28.7318	9.72623	12.0766	0	0	54.5945	43.4385	37.3421	56.7137	56.0766	57.0013	0.639758	0	0.998497	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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