TCONS_00071173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071173
Unique NameTCONS_00071173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071173 ID=TCONS_00071173|Name=TCONS_00071173|organism=Clytia hemisphaerica|type=transcript|length=932bp
atttaaatattcaatgtcaattatttttggaaatttgtattcAAAAGTGG
TGTTGTCTCAAAGTATAGCTTTAAGGAGAATGTGACGGTTGTGGTTTAGA
TAGATATTTAACCTTTCTTTACTTAAAGATTTTAATCAAACTTATGGTTA
GGGATTACTCACGTAACACGCTAAAGTTTGTATATCAGACGTCATCAAaa
agttgtttatttttcttagagACCGTACGGCCTGATGGAGAAAGAATTAG
AAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGACGGAGACGGTCAA
CTATCAAAGAATGAATTCAATAACATGTTACGTACAATGGGTTTGAATCT
TACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACTGACGTTGATAAAA
ATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAAAGAAA
CGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAGGCCGA
TCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGGCCGCTTTAA
AACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGTGTGATGGGT
TTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGaatTCTGCAA
GTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGATTGGATTTTCATA
AGCCAAAAGGGATGGCTTTTTTGTATATAGTTACTTGTAAATGTGGTTAA
AATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGCTTCTACTCTGGAA
CGCgtttaatgttttttaatgACACCCTATTCCTTAGCTCTGGTTTAGTC
GGCCCACTTTTAGCCCACTTTATGCCAACTCtagcaattagaataggcag
ggctaAAAGTGGGCCGACTAAACCAGAGCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_6:199705..212553-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071173 ID=TCONS_00071173|Name=TCONS_00071173|organism=Clytia hemisphaerica|type=transcript|length=12849bp|location=Sequence derived from alignment at scaffold_6:199705..212553- (Clytia hemisphaerica)
ATTTAAATATTCAATGTCAATTATTTTTGGAAATTTGTATTCAAAAGTGG
TGTTGTCTCAAAGTATAGCTTTAAGGAGAATGTGACGGTTGTGGTTTAGA
TAGATATTTAACCTTTCTTTACTTAAAGATTTTAATCAAACTTATGGTTA
GGGATTACTCACGTAACACGCTAAAGTTTGTATATCAGACGTCATCAAAA
AGTTGTTTATTTTTCTTAGGTAAATGTCAAGTGTCTTTATATACATTTTT
CATGAAAAAATATCGTGTAAAAGTTTCTACTTTGTTTTGATCTGAGCGAT
ATGGATTTACGTTATAAAAGCTTGAGACAGAAGGGAAACTTAGTAGTAGG
AGATTTTGTAACTGTTGTTCAGACTTTTGTGGAATTGAGGGGCTAGTTGA
GGATCAACTATAATTTTTGGACATGGCTCGTGAAGAATATGTAAGTCTTT
TAAAAACATTTCACTACTTTAACCAGCTAAGCTGTTCTTTAATAACACCC
ACTTCTTACAGACCCGGGTTTTTTGAGCCAAAATAACGGACCGAAACTCG
AGGGGATTGATATTCCTATGTTATTTCATGGCTGGGGATTTGATGAATTC
CATTGTTTTCAAGTCAGAAAATTCACTGGGGATGGAAGAAATACCACAAT
ATTTTGCAGTGAGGATTTGCTTATCTGATTATTTTCAGTGGGGACAAAAA
TTGAGTATAATTTTCCACTGGTAACGTTATTTTGACCAATTTTTCCAGTG
GGAGGGGGTCCCAATGAGTCTGTGAGAAGGGGGTGTTTAATACGGCCAAT
GACATATTATCTGGTAATATAGCTTTCTGGGTTTTCTTTTAACTTTTATG
ATTTTGGTTCCTACAGTGTTTGAGGCCCGAAAATTCTGTTACCCAATGGG
CAAGTTAGTGAGCTCCAAATTTTTCTCCAAAACGAAAAATGTCATCCTTG
TACAAAGTCTTGGCAGCTTTAAAACATACCTCTCCGGAATTCTGAGAAAT
TCGAATCATGGGAACTTTCTTTTCCCCTGGTGGGGGACCTTCCAAAAGTT
ATTCAGTGGAGGTAGATTACAGAAAAAAATAGTACGCATCGACTAGCAAA
GTCTTTTTTCAGAATGTATTCATGATATTCATGACGTAATGTTGTATAAG
GAAGCACCCAAAATAGCCCAGGAGTTCTCTTCTAGTTTTCTATTGTTTAA
TTTCAAATTAGTTGCACATACCCGGTTTTCTCTGGATGCTTCCGTATGAA
ACATTACGTCATTACGCCATGAATATCATTAATCAAGAACAGTGACTTGT
CAATAAACATTGATCGATTACAAACAGTTCTATTCCACGACCGATTGTAG
ATATGTGTAAATTCTTTTTCCACCGGAGTTAAAAAGACTGAAATCTTTTA
AAATCTAATACGTACTGTCGTTTAATTTCACTTCCTGCACTAAGATTCTC
CTTAATTTTCAGGGACTTTTCCGGCATGCACCGACGTGAGATTGGAAAGG
GTTTTTTTCTAAAGTTATGGAATATATTGTGAAACTTTCCGAAGCTCACT
TTTCAACTACCCGGAGTCCTGGACTTTTTTCTATAGAAAAGTGGAAGTGG
AGTTTTAGTACGGGAAAATATTTTATGCAAAATGACGGTATAGTTACTTT
GTGGTGGCACTTATAATGGAGCCGATAGGAGTTTGTGGTGGCACTTATAA
CGGAGCCAATAGGAGTTTGTGATGATAACGTGTGTTTCAACTAAAAACTC
CTATCGGCTCCATTATAAGTCCCACCACATACCTAAGTATGTCTATCAAG
AATAATGACTCATTGATTAATAGCATCACGTCTGAGGAAGGGATTTAAAA
AGAGATATTTCCCTTACGCAAAGCTCGTTAAAAGTTGACTGAGCGAATTG
CGACCAATTAAGGTCATTATACTTACCATGGCAATTTCGTTTCGAGAAAG
GCAGCTTAATGTGAAAGATAAAATTTTCTTAATGATAAGGAAAAGTTGAA
GGTATTTTGAGTTTTGGACTTGTAAAGAGACGGAATCTTAGTGTTGTTTT
TTTGTTTTTACTTAAAGATGTCAAATACTCAAGTCCAACAAAATGTAAGA
TATGCCACTCATACTCTAAGGTCCCGAATAGGTGGGGTCCGAATTTGTAT
CTCCAAAAACAGTAACGTAGACAGGAGGGGCGCAAAATTTGTGTAGAAGA
GCAGATTTTTATGACACTGTAATTATCTTTTCATAATGTAAAAAGATAAT
TACAATGTCATAAAAATCTGCTCTCCTACACAGGTTTTGCGCCCCTCCTG
TCTACGCTACTAAAAAACCCACAATGATAAGGTACTTATAAGCTACAACC
AGGCTATTGATAGCAATTCAGCCTTTGATAGCTGAAAATATTTTCCAAAA
GAAATTAACAGCGGGTCCTAATAAGCATAGGCGTAGCAAGATACCCTGCA
AAATTTATGGATGAGAGCGGTTTTTACGACACTGTGATTATTGTCTTTAT
TATATGTCATAAACGTCTGCACTCCCTCATAAATTTTGCAGGGTATCCTG
CAGCGCCTATGATAAGAACGGGGACCTTTGAGTACTTTGTTATTTGACGT
CAGAACAGATCAGTCGCGCTCTTCATTTTTTTTTAAATGGAGAATTTTTA
ATAAAATACAAAAACATGAAAAAAACGACCAAATTTCAACAAAAAACGGT
ATCGCCTAGCAGAATTTCAACAAGAGATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTTTGTAATAAACCAAA
CCAATGTATGAGCGATTTATAGAGGCCCATGTGCATGCACGGTGGCCTGG
AAATCTGTAAAACATTATTATTATTATTATATTATGTTAATTTTCCTGAT
TTATTAAACAATCCTGAACCCATAGACGCCATCGGATGGACAATGGAATC
CAAGGCGTTGAGTTTAAAGCGTCAAAGCAGTTAGAAAGGAATCTTAAACC
TTATTCTCAAGCAAGAAAAAGTGAAGCCTAAATATTTGTGCCACATTTAC
AGCTAATAGAAGGCGATTGTAATACATTCGATCAAAAGTACACCCTTACA
GTGCATTTCCAGGGTCTCGAAAAACCTTCCCTTAAGGGCGACACATGCCG
TGGGTTGGACCTTATGAATGCCTCCCCCCGTCTGGGGAGCCTCCTCAACA
CGTCATAGCTCAGAACCAACTTCACTTTCGGCTAATATCCCATTCTTGAT
CGGTGTTTGAGGTTTGAGATGATGGAGATAAGACATGAGAAAATAAATTC
ATGTTAATAATTTTTCAATAATCCTTCCATTAATCATACTGCAGTAAATC
GTGCAGTAGTCCAACAACAAGTTTCTTACTTATGCTATCTCTTTCGTGAG
AAGAATAGCCAGCAGCAAGAGTAGCCATACCCTGGCCTCACTTTCGAATT
CAGATCTATCAGAAATGTGCTTTGTGTGTTATAACCGTACTCTCAGGTGC
CTAATAAACGGCCCTCGGACCTTATTAGAACCCCCCTCCCCGTTTATTAC
ATTTGAAAATTTTCTCAGCTGTCAAAATAAGAATCCCTTATTGTACTTTA
AAAAGCCAGGTTCTTAGTCTGAAATTACCTAATTTGGGGTATTTAGAGGT
ATTATTTACAACCCCCCGTTTATTAGGCACCTGAGAGTATGCATTATAAC
AACCCAAATTATTGTATTTTTTTGCTAGTTGCCTGCCAACAATTCTCTTC
AAGCCTTACGAGCTTTTTGATAAAAATATAAATGACGGATTAAATGCACC
CCCTTTTTTCGTTTTTTAAGCGACATGTTTTTGAAATATGGCAATGGGTT
TTTAACCTGGTTGGTTACGCGTGAATTCATTTTCCACCTTAGAGTTTCAA
TTCTAGCCATTTCGGGGCTTTGAAATCAATGGTAATGACTAAATTAGCAG
TTCCCAGGTTATCATATTCTCCTTTGGACATAGATAAAGAAAACATTTGG
CATATTAACATTTATTGAATGCTAATTAAGAAGGTTGGATTAAATGATTA
TTCACGGCCTACCTCATACCACACTCCATTGAAGTCAATAGGTGTGTTAA
TCCTTCTCTGTATGAATGAAGCTTAAGTGCAATCAATAAGAATTATATGT
GCCCCGCAAAGTAATTCTTGAACCCTAAGCATTTCTATAAGAATAAACTA
TATAAGAACATAAGGCTTCGAAGGCCAAAATATTCAGGACAGGTTAAAAA
CATTTTAAGGCTTTGCGAACTCTAGAACATCGAATTTTTTAAAGAAATAC
TCAAAAATGGTGAAATTAAGAACATGTTAAGAACATTTTTAGGTTCAAGA
CTCAAAAAGTTAGGAACATCATAAGGCTCAAAAAATGTTGAATGCTCTTA
GAAATGTCGAGCGGGGCAAACGTTTTGTTTTGACCGGACGCCTGCATTTC
GGATGCAAAAGTTAATACCCTAATAGATTTCCATTACGGATTAATTGGTC
TTGTTGTTTTTATAGTATACTTTAATTAGACTTTTGTTGTTTTACTTATA
CTTTAATTAGGGTTTTTGTTGCTTTGAAATATAAAGTTTATAATTTTTGT
TTTTCATTTTTGCTACGTTGTAGTATATATCAGTTTGAGATTGATTAAGT
GTTGTTGTTAGAGTTTTTTTTAATATTTTTTGGTTTATTCCTATTCCCTG
ATTCACAATCCTTGGTATATTCCTTGTTGGGAAATTTGAATAGAGTCAAA
GGTAGGTTGATTTGCGATTAATTTTTTGATAATATCCATTGCTAGGCGTC
ATTAAAAGGTTGCCATGTTAGTGATGCATAAAATTGGCATAACATTTTTT
GTCAGATTGTTTTTTTTTTTATTAACCTGTAATTTATGATCACGGCCTCT
TTGGTGCTCTGTGATGGCTTTATTTTGTATCTGAGAAAATATATGGATCT
TTCAATTCTGGGTCATTTTGTATTGTTGAGCCATGGTAACCACATCTTGA
TAAGAATCTTGAAATCATATATAAAAGGAACTGCATAGATATCAGATACT
CATAATTTGCTACACCACACTTATAAGTTTTTTTGCAGTGTCATTTTCGC
AGTAGGAGAGAGGCTTTCTTATTTTCTTCAACCTTGAGGCGAGAATGAAA
AAATTAATGATGGTACAGTTGAATTTCTATAATTCGAACAAGCACGGGGA
ACTCAAATTTGTTAGAGTTACTTATTTGTTAGAGGGTTTATAGGTAGGCT
TTTCCTAATCCGTGTACCCACTACGTACTCAGTTAGAGTTGAAGAAATTT
TGGAGTTATGAAGTAAAGTTTAATGACGCATTGTTAACTGAAGGGGCTAG
AGAACTTATTCGAGTTAAGGAGAAATTCGACTTGTAGAGGCTCGAAATAT
GGAGACTCTACTGTACGTATCTTTAGACAAGCCAGCAGGTGACAGGTGGC
AGAAAACCTAAAGCTATGTTAGTATCTACATCAGTTCTGATCTTTATATA
CTTAGACTAGTAAACCACGTCGTTGCAGCTTACGCTTGCAAAGGGCTCAT
TACTTGGGCTTTTGACACCACCCTCCCACAGCAATTTATCTTTTTATTAT
CTTTATTCACGCTTTTGTGTGTCTCAGTAAAGCCAGACGTTTGCTAGTCC
ATAAAAACTAAGCTTTAGCTCACTGACTCAACAACAGTTTTCAAGCAGTT
GGTAATAATAAGTAGTCTAAATGCAAAGAAGGGCTTATTTTTCTGGGACA
TCTCCAGGTCAGTCTCTTAAGGTTGTCTTGGTAGCTGATATCCACTAACG
AATTTGTGCTCCTTATATAAATTTACTGACTTCGTCTTTGCAGAGTCTGC
AATTCAGACTGTCTAGCTAAACCTGGTCGAAATGCGATTTCCTAGAATTA
CACCCCTGTCTCACAGCCCCAGTGGAACTTCTTGCCACAGTGGGATGAAA
ATTTATATCAAAATNCGATTTCCTGGAATTACACCCCTGTCTCACAGCCC
AGTGGAACTTCTTGCCACAGTGGGATTTTGAAAATTTATATCAAAATTCC
AAAGGGGATATAAATTCTATTGTTCCTAGGTAAAAAACCATTCGGGATAG
TTTTGGATTGCAATTTTTCCCATTGTTTTTCAAATGGAGATGAGAACAAT
GCAATTTTCCAATGGGCTGAACTTATAGGGTATTTTTCCCAACGAGAACA
AAACATCTTAGCCAAATTTTCAGTGGTTACGGGTCTGTGACACAGGGTTG
TTTCATTCTCCTTTGAAGAAAATACATGGAATACATCCGCATTCATTTAG
ATGGGTAGGAGTATTTTATAGAGCTGTTTTCATTAAAGGCGATGAACATT
TTTTAGACTGCTGTGTATGCTCAAAGGCAGGGAGGAAAAAAATGACTTTG
AAAAGAAGAAAAACGGTTTTTCCTTTTTGTATTTTGAGTTTACTCACGAA
GATTGCTGCGATTTTTTCCGTTTCCTATGAGAATGAGATACGAAAACTTC
CTTTTTCCATAGTGCTTGTCGGTTATTGGAAATTTTTTTATATAAGAACG
TTTTACGATATTTAAAAGAATTATTTAATAGGATTTATTGAGATTTCTTA
GTGAAGATTTCTAGGAAGCTTACAGAAATAACGTTTTAATGTGTCCCAAC
CTCAAACAAACAACATGGAAAATTTACTTGATATGATAAAGCTATATTAG
TTGTACCTGGTTGTGCTATAGGTCAAAGCCTTTAAACTTTGAGAGATTCT
TTCCTGGAATGTCTGGTTTAAGTCTTAGTAAAGTAATCTTAGCCTGTGTT
CTTACAAAAAAGGAAATAATATTGTAAACGAATTGATCTTTTTCTTGAAA
GAGAGTTTTCATGAGGTGTTGAATGAGAATCAAGTCTGAGATAGATAAAA
ATTTGAAGTAATATAAGCCAAAATTTGTTTTCAAGACGTATTTTTTCAGT
CAAAAGAAGGGGGAATATATAGCAATTGAAGAAAAAATGACAGTAATTAT
TTTCATTTTTCCCAGCCTAACACACGACGTCATTTCGACGTACATCTAAC
GTCAGATTAACGTCATGGGCGTCAAATGGATGTTGCTTAAACGTTTTCTG
TCTGAAAAATCCATATTTTCATATTTCGAACTAGCCTCTAAACCATTTAC
GTCATAAGTACCCACTTTCATTTTTTCATTGTCAACGTAATTCTGCGGTA
TAGGGGCTGGGCTACCTTTATATATATATTTTCTGTTAGTCTGATCGAGG
AAGGGAGAAACGATCTTTTTCTCGAGCAAAATAGACAAGAAAATGTTTGG
GGTAAGGTTAATCAAAACTAACCTTTTATACATTTTTTAAAAAGGTGTTT
CATTGTGAAAAATATTCTTCGAGGATAAGAAGCAAAATGAAACAGCCGAA
TTATCCGGTCGGGTATACTACGAAAAAGGTCTGCTATTTTTCGGCTGTAT
AAAGGTCGTAATCATTCTTGAAATTTTCGGAGAGAGGGGTTTTTTACTTT
TCATGATTTTCTTCTTTATTTTCTTTTTCTAGAGACCGTACGGCCTGATG
GAGAAAGAATTAGAAGGTAGGTTTTTGTTTCCAAGTTTTTGTTTTTTGTT
TGAGAGGATTTTCATATACGGCTACAATGCTGTTTGATACTGATTTCTTA
ATTCGTCGTTTCTCAAAATTCAATTTCGGGTGAAAACCGTAATTTCAGCT
CTTCCACTTTATGTCATCGGGTTTTTTAATTTGGGAGGGGTTTATCGGCT
TTCAGGCTATATTCTAAATCTTATTGTATCATTTTAAAACTTTTAGATCA
TGAGATCCTTAAGTCTTAAGTCTAATGTTAAAACTCAGAGTTAGAACTCT
ACTTTCCCACCATCAGTTAAAGCACTTAAAAATCACTTGCTTTTTTGAAA
TTCTGCCAAATATTATGATCTGCATTGTAGATAGAATATTTTACATATAT
ATTTTACGTGGATAGTTCAATAATCAAGGACCTTTTAGCCAGTCTATAAC
ATCATCCACTGCTAGCCGGTTCGGAATATTTATTAACTGAACGGAGCATT
GGCTAGAGCGGGAAACCGAGAACCCTTTAATTTGTGGTGCTGAAATCGTA
GACAACATGGCAATCTCTTCTTGATTCAAATCCTAGTCATTACCTTTAAA
ATTAAACTTGCTAGCCTCCAGGGAAAGGTGTGACCTAGCTTTGAAACCTT
TTTAAAGTGCGCTAAAAGGATCATTGCATACACTAGATTGATGATTCCAA
AAGAACGGTAGCAAAGATTTTCTTTATTATCAAAATTCAATACGATAGTA
GACAAATTCATTTATTTTCTCTATTTTTAGAGTACCGCAAATATTTTTGG
CAGCAGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAATAA
CATGTTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATT
TATTCGCCAAAACTGACGTTGATAGTATGTATCCCAGCTGGAACACAACG
TTGTTTCAATGTTTATCTAACGTTAACGTCAACGTTAGATTAACGTTGAA
ACAACGTTGTGTGCCAGCTATGTATTGATTCCTTTTTAGGGGGCTTTTTT
ACACCCCCCTTCTCACAGACCCGGTGGGATTCTATCAGCTAGTGGGGTTA
AAAATAACGGTCAAAAACTCGATAAGGATTGATATTCCCATGTTTTTTAT
GGCTGGGGATTTAAATTCCATTGTTTTCTAGCCAGAAAATTCTGTGGGAA
TGGAAAAAATAGCACAATATTTTACAATTATCGTATCTCCGTTCGCAGTT
TGTAATAATGAACACTTAATGATTTTACTAGCGAGCACCTCACTAAAAAC
CGGGATTTTTCATCATCAAAGTTCCACTTTGCCGATTTTCGAAAAATAAA
AGCCTTTCAAGTGCTTTGACGCAAATTCGATTATTTTGATACTGCAGGAG
CTTCGAAAGTTATAAGTGACGTCAAAAAATCGAATGTTTAGAGCCCGAAA
ACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGCCCGAAAACCCGGGCTCAAAAC
ATTCGAAAAAGTCGCAAAGTGGAATAGACGTTAATTGCGTAAAAAAACGC
GGGTGACGTCTAGTATAGGCTAGAAAACCTGGGCTCAAAACATTCGAAAA
AGTCACAAAGTGGAATAGACGTTAGTTGCGTACAAAAACGCGGGTGACGT
CTAGTATAGGCTATGATTGTATATGGTATAAAAAAAACGGGGAGGATTGG
CATGTGTCAGTCTCGTCGCAATCGTGACGGGATCTTCTAAATAGACACAA
GACAAGGACAGGTCGATGACACTACTGCCTTGCCAAAGATGTTGTCCTCT
TCTACTGCCTTGCAATCATATTCTCTCTATAGAAGATATACAACTGTTGC
TCTCTAAAATAGACTGACGCACCAGTCAGGCTAACATATCATGCGGGAAT
AGTGAGCGTAGTAGGAAATTCTGTCGATGAGAGGTGCGCTTCGCACGAAA
GTGGACATCGGGCTTATCTGATATTCCGATGGCGCATTGGCGGCCGCCCA
CGCTAAAGCTCTAAAGGAGCGGGCCAAAATTTTCCCGACCTTCAGAGCTT
TAGCGTGTCGGAAGAAAATTTCTCCATCGAGTACCAGATAAACATCGGGC
TTAAGTTAGATCGCTTCCAAATAGTTTTTGGGAAGATTTCGTGGGAATTT
CCCTACTTTCTCAATTCATACCCACCTATTTTAACCCGTTCTCATGCGCA
GTTCCTATTTTACCAAAAACCCCACACAGCCCTCTAACATGGTTTAATTA
ATAGACTATTTCGCTAGTCTCTAAAGATGTCAACTTCCAAAAGTGTTAAA
GGGACTGAAAAAAATAGTGTTTAATGTACGCCACTTGTTCTCTCTTATCT
ACCTGCAGAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCA
TTGCAAAGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTT
CAAGAGGCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTT
GGCCGCTTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGAC
GTGTGATGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAA
GGTACCTTAGCATTTGTTTTCTTTTCATGTTACACATTTCTTTTAATAAA
AACATCCAAATGTTCTTAACTTTTTGATTTTTAAACCAAATATTATTCTG
ATTTTCAGCATTTTGTGAAGATTTATATTTGATTTCTACAGTCTGTTTCA
TTAAGTTTAAAGCCTGCAGGGTTAGAGTAGAATCTCTAACCTTTCCCAGG
CAAAAAAAAAAGTGAAGCCACTTATTTCCCATTCAGAATGTGCCTGGAAC
GCGTCGCAATCATGACGACAGATTGTATCTAGTGGTTCCTTTGTTTTTGA
GGACTACATTTTTTGAAATCTAGATCTTAATTTCAATCCAGCGTTTGTGT
AAAAACCACGCGTGGGCGTTCTGGATTGGAAATAAACGACTTCATTTCCT
ATCCAGGAGTCTTGAGCCTAGCCCCTCGGGCTTAGAATAAGTCAATGGTT
TGTACCTCTAAAGAATCCTGCATTATAACACGCATGCGTAATTTGTCGTT
CTTTAAACATATGTAGTTAAACTGCGTGATAATCAAAGAGGAGTAAATTC
GTACTTAGGGGTGGACAAACTAACCGGGTCGGGGTTGGGTTATGGACGGC
GAAATATGTCATATTTTGTGAAATATGTTGTTCTTTTTGTCTATTTTTAG
CCAATGTAGGATTCTTTAAATTAAGCCTCTCATAAATCTTGTTTTCTTTT
GTTTCAGAATTCTGCAAGTTCATGGCTTAGAGGTTGGAACGTTCGATGGA
AGGATTGGATTTTCATAAGCCAAAAGGGATGGCTTTTTTGTATATAGTTA
CTTGTAAATGTGGTTAAAATTGTTTCAATAAAAGAAAGTCTTTAACTTCC
AAGCTTCTACTCTGGAACGCGTTTAATGTTTTTTAATGACACCCTATTCC
TTAGCTCTGGTTTAGTCGGCCCACTTTTAGCCCACTTTATGCCAACTCTA
GCAATTAGAATAGGCAGGGCTAAAAGTGGGCCGACTAAACCAGAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044235XLOC_044235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071173-exon-scaffold_6-1575043694:212335..212553TCONS_00071173-exon-scaffold_6-1575043694:212335..212553Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1575043694:203838..203871TCONS_00071173-exon-scaffold_6-1575043694:203838..203871Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1575043694:202930..203073TCONS_00071173-exon-scaffold_6-1575043694:202930..203073Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1575043694:200703..200945TCONS_00071173-exon-scaffold_6-1575043694:200703..200945Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1575043694:199705..199996TCONS_00071173-exon-scaffold_6-1575043694:199705..199996Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1510915933:212335..212553TCONS_00071173-exon-scaffold_6-1510915933:212335..212553Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1510915933:203838..203871TCONS_00071173-exon-scaffold_6-1510915933:203838..203871Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1510915933:202930..203073TCONS_00071173-exon-scaffold_6-1510915933:202930..203073Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1510915933:200703..200945TCONS_00071173-exon-scaffold_6-1510915933:200703..200945Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1510915933:199705..199996TCONS_00071173-exon-scaffold_6-1510915933:199705..199996Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1491911889:212335..212553TCONS_00071173-exon-scaffold_6-1491911889:212335..212553Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1491911889:203838..203871TCONS_00071173-exon-scaffold_6-1491911889:203838..203871Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1491911889:202930..203073TCONS_00071173-exon-scaffold_6-1491911889:202930..203073Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1491911889:200703..200945TCONS_00071173-exon-scaffold_6-1491911889:200703..200945Clytia hemisphaericaexon
TCONS_00071173-exon-scaffold_6-1491911889:199705..199996TCONS_00071173-exon-scaffold_6-1491911889:199705..199996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:199705..212553 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.810368	0.560145	3.73779	1.50054	9.262	12.5481	0.317369	0.955182	1.26502	0.90241	1.93194	2.10936	1.22607	0.609321	3.31877	0.648139	1.92317	5.19715	1.50662	0	1.61398	1.68702	5.00149	3.31948	0	0	3.05141	1.93353
Blast
[Close]
BLAST of TCONS_00071173 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.565e-18
Identity = 40/143 (27.97%), Postives = 77/143 (53.85%), Query Frame = 1 
Query:  232 LMEKELEEYRKYFWQQDVDGDGQLSKNEFNNMLRTMGLNLTRQEVENLFAKTDVDKNYRISFHEFAEAFIAKKREHVSGDRLRRVFQEADRDRDGYLTTDECLAALKQLGHVMDDKGIRRVMGLMDKNNDGMITFQEFCKFMA 660
            L E+++ E+++ F   D DGDG ++  E   ++R++G N T  E++++  + D D N  I F EF      K ++  S + +R  F+  D+D +GY++  E    +  LG  + D+ +  ++   D + DG + ++EF + M 
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
The following BLAST results are available for this feature:
BLAST of TCONS_00071173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM35.565e-1827.97Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
back to top