TCONS_00071169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071169
Unique NameTCONS_00071169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071169 ID=TCONS_00071169|Name=TCONS_00071169|organism=Clytia hemisphaerica|type=transcript|length=784bp
CACTTATAAGTTTTTTTGCAGTGTCATTTTCGCAGTAGGAGAGaggcttt
cttattttcttcAACCTTGAGagACCGTACGGCCTGATGGAGAAAGAATT
AGAAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGACGGAGACGGTC
AACTATCAAAGAATGAATTCAATAACATGTTACGTACAATGGGTTTGAAT
CTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACTGACGTTGATAA
AAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAAAGA
AACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAGGCC
GATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGGCCGCTTT
AAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGTGTGATGG
GTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGaatTCTGC
AAGTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGATTGGATTTTCA
TAAGCCAAAAGGGATGGCTTTTTTGTATATAGTTACTTGTAAATGTGGTT
AAAATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGCTTCTACTCTGG
AACGCgtttaatgttttttaatgACACCCTATTCCTTAGCTCTGGTTTAG
TCGGCCCACTTTTAGCCCACTTTATGCCAACTCtagcaattagaataggc
agggctaAAAGTGGGCCGACTAAACCAGAGCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_6:199705..206336-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071169 ID=TCONS_00071169|Name=TCONS_00071169|organism=Clytia hemisphaerica|type=transcript|length=6632bp|location=Sequence derived from alignment at scaffold_6:199705..206336- (Clytia hemisphaerica)
CACTTATAAGTTTTTTTGCAGTGTCATTTTCGCAGTAGGAGAGAGGCTTT
CTTATTTTCTTCAACCTTGAGGCGAGAATGAAAAAATTAATGATGGTACA
GTTGAATTTCTATAATTCGAACAAGCACGGGGAACTCAAATTTGTTAGAG
TTACTTATTTGTTAGAGGGTTTATAGGTAGGCTTTTCCTAATCCGTGTAC
CCACTACGTACTCAGTTAGAGTTGAAGAAATTTTGGAGTTATGAAGTAAA
GTTTAATGACGCATTGTTAACTGAAGGGGCTAGAGAACTTATTCGAGTTA
AGGAGAAATTCGACTTGTAGAGGCTCGAAATATGGAGACTCTACTGTACG
TATCTTTAGACAAGCCAGCAGGTGACAGGTGGCAGAAAACCTAAAGCTAT
GTTAGTATCTACATCAGTTCTGATCTTTATATACTTAGACTAGTAAACCA
CGTCGTTGCAGCTTACGCTTGCAAAGGGCTCATTACTTGGGCTTTTGACA
CCACCCTCCCACAGCAATTTATCTTTTTATTATCTTTATTCACGCTTTTG
TGTGTCTCAGTAAAGCCAGACGTTTGCTAGTCCATAAAAACTAAGCTTTA
GCTCACTGACTCAACAACAGTTTTCAAGCAGTTGGTAATAATAAGTAGTC
TAAATGCAAAGAAGGGCTTATTTTTCTGGGACATCTCCAGGTCAGTCTCT
TAAGGTTGTCTTGGTAGCTGATATCCACTAACGAATTTGTGCTCCTTATA
TAAATTTACTGACTTCGTCTTTGCAGAGTCTGCAATTCAGACTGTCTAGC
TAAACCTGGTCGAAATGCGATTTCCTAGAATTACACCCCTGTCTCACAGC
CCCAGTGGAACTTCTTGCCACAGTGGGATGAAAATTTATATCAAAATNCG
ATTTCCTGGAATTACACCCCTGTCTCACAGCCCAGTGGAACTTCTTGCCA
CAGTGGGATTTTGAAAATTTATATCAAAATTCCAAAGGGGATATAAATTC
TATTGTTCCTAGGTAAAAAACCATTCGGGATAGTTTTGGATTGCAATTTT
TCCCATTGTTTTTCAAATGGAGATGAGAACAATGCAATTTTCCAATGGGC
TGAACTTATAGGGTATTTTTCCCAACGAGAACAAAACATCTTAGCCAAAT
TTTCAGTGGTTACGGGTCTGTGACACAGGGTTGTTTCATTCTCCTTTGAA
GAAAATACATGGAATACATCCGCATTCATTTAGATGGGTAGGAGTATTTT
ATAGAGCTGTTTTCATTAAAGGCGATGAACATTTTTTAGACTGCTGTGTA
TGCTCAAAGGCAGGGAGGAAAAAAATGACTTTGAAAAGAAGAAAAACGGT
TTTTCCTTTTTGTATTTTGAGTTTACTCACGAAGATTGCTGCGATTTTTT
CCGTTTCCTATGAGAATGAGATACGAAAACTTCCTTTTTCCATAGTGCTT
GTCGGTTATTGGAAATTTTTTTATATAAGAACGTTTTACGATATTTAAAA
GAATTATTTAATAGGATTTATTGAGATTTCTTAGTGAAGATTTCTAGGAA
GCTTACAGAAATAACGTTTTAATGTGTCCCAACCTCAAACAAACAACATG
GAAAATTTACTTGATATGATAAAGCTATATTAGTTGTACCTGGTTGTGCT
ATAGGTCAAAGCCTTTAAACTTTGAGAGATTCTTTCCTGGAATGTCTGGT
TTAAGTCTTAGTAAAGTAATCTTAGCCTGTGTTCTTACAAAAAAGGAAAT
AATATTGTAAACGAATTGATCTTTTTCTTGAAAGAGAGTTTTCATGAGGT
GTTGAATGAGAATCAAGTCTGAGATAGATAAAAATTTGAAGTAATATAAG
CCAAAATTTGTTTTCAAGACGTATTTTTTCAGTCAAAAGAAGGGGGAATA
TATAGCAATTGAAGAAAAAATGACAGTAATTATTTTCATTTTTCCCAGCC
TAACACACGACGTCATTTCGACGTACATCTAACGTCAGATTAACGTCATG
GGCGTCAAATGGATGTTGCTTAAACGTTTTCTGTCTGAAAAATCCATATT
TTCATATTTCGAACTAGCCTCTAAACCATTTACGTCATAAGTACCCACTT
TCATTTTTTCATTGTCAACGTAATTCTGCGGTATAGGGGCTGGGCTACCT
TTATATATATATTTTCTGTTAGTCTGATCGAGGAAGGGAGAAACGATCTT
TTTCTCGAGCAAAATAGACAAGAAAATGTTTGGGGTAAGGTTAATCAAAA
CTAACCTTTTATACATTTTTTAAAAAGGTGTTTCATTGTGAAAAATATTC
TTCGAGGATAAGAAGCAAAATGAAACAGCCGAATTATCCGGTCGGGTATA
CTACGAAAAAGGTCTGCTATTTTTCGGCTGTATAAAGGTCGTAATCATTC
TTGAAATTTTCGGAGAGAGGGGTTTTTTACTTTTCATGATTTTCTTCTTT
ATTTTCTTTTTCTAGAGACCGTACGGCCTGATGGAGAAAGAATTAGAAGG
TAGGTTTTTGTTTCCAAGTTTTTGTTTTTTGTTTGAGAGGATTTTCATAT
ACGGCTACAATGCTGTTTGATACTGATTTCTTAATTCGTCGTTTCTCAAA
ATTCAATTTCGGGTGAAAACCGTAATTTCAGCTCTTCCACTTTATGTCAT
CGGGTTTTTTAATTTGGGAGGGGTTTATCGGCTTTCAGGCTATATTCTAA
ATCTTATTGTATCATTTTAAAACTTTTAGATCATGAGATCCTTAAGTCTT
AAGTCTAATGTTAAAACTCAGAGTTAGAACTCTACTTTCCCACCATCAGT
TAAAGCACTTAAAAATCACTTGCTTTTTTGAAATTCTGCCAAATATTATG
ATCTGCATTGTAGATAGAATATTTTACATATATATTTTACGTGGATAGTT
CAATAATCAAGGACCTTTTAGCCAGTCTATAACATCATCCACTGCTAGCC
GGTTCGGAATATTTATTAACTGAACGGAGCATTGGCTAGAGCGGGAAACC
GAGAACCCTTTAATTTGTGGTGCTGAAATCGTAGACAACATGGCAATCTC
TTCTTGATTCAAATCCTAGTCATTACCTTTAAAATTAAACTTGCTAGCCT
CCAGGGAAAGGTGTGACCTAGCTTTGAAACCTTTTTAAAGTGCGCTAAAA
GGATCATTGCATACACTAGATTGATGATTCCAAAAGAACGGTAGCAAAGA
TTTTCTTTATTATCAAAATTCAATACGATAGTAGACAAATTCATTTATTT
TCTCTATTTTTAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGACGG
AGACGGTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAATGG
GTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACTGAC
GTTGATAGTATGTATCCCAGCTGGAACACAACGTTGTTTCAATGTTTATC
TAACGTTAACGTCAACGTTAGATTAACGTTGAAACAACGTTGTGTGCCAG
CTATGTATTGATTCCTTTTTAGGGGGCTTTTTTACACCCCCCTTCTCACA
GACCCGGTGGGATTCTATCAGCTAGTGGGGTTAAAAATAACGGTCAAAAA
CTCGATAAGGATTGATATTCCCATGTTTTTTATGGCTGGGGATTTAAATT
CCATTGTTTTCTAGCCAGAAAATTCTGTGGGAATGGAAAAAATAGCACAA
TATTTTACAATTATCGTATCTCCGTTCGCAGTTTGTAATAATGAACACTT
AATGATTTTACTAGCGAGCACCTCACTAAAAACCGGGATTTTTCATCATC
AAAGTTCCACTTTGCCGATTTTCGAAAAATAAAAGCCTTTCAAGTGCTTT
GACGCAAATTCGATTATTTTGATACTGCAGGAGCTTCGAAAGTTATAAGT
GACGTCAAAAAATCGAATGTTTAGAGCCCGAAAACCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAGCCCGAAAACCCGGGCTCAAAACATTCGAAAAAGTCGCAA
AGTGGAATAGACGTTAATTGCGTAAAAAAACGCGGGTGACGTCTAGTATA
GGCTAGAAAACCTGGGCTCAAAACATTCGAAAAAGTCACAAAGTGGAATA
GACGTTAGTTGCGTACAAAAACGCGGGTGACGTCTAGTATAGGCTATGAT
TGTATATGGTATAAAAAAAACGGGGAGGATTGGCATGTGTCAGTCTCGTC
GCAATCGTGACGGGATCTTCTAAATAGACACAAGACAAGGACAGGTCGAT
GACACTACTGCCTTGCCAAAGATGTTGTCCTCTTCTACTGCCTTGCAATC
ATATTCTCTCTATAGAAGATATACAACTGTTGCTCTCTAAAATAGACTGA
CGCACCAGTCAGGCTAACATATCATGCGGGAATAGTGAGCGTAGTAGGAA
ATTCTGTCGATGAGAGGTGCGCTTCGCACGAAAGTGGACATCGGGCTTAT
CTGATATTCCGATGGCGCATTGGCGGCCGCCCACGCTAAAGCTCTAAAGG
AGCGGGCCAAAATTTTCCCGACCTTCAGAGCTTTAGCGTGTCGGAAGAAA
ATTTCTCCATCGAGTACCAGATAAACATCGGGCTTAAGTTAGATCGCTTC
CAAATAGTTTTTGGGAAGATTTCGTGGGAATTTCCCTACTTTCTCAATTC
ATACCCACCTATTTTAACCCGTTCTCATGCGCAGTTCCTATTTTACCAAA
AACCCCACACAGCCCTCTAACATGGTTTAATTAATAGACTATTTCGCTAG
TCTCTAAAGATGTCAACTTCCAAAAGTGTTAAAGGGACTGAAAAAAATAG
TGTTTAATGTACGCCACTTGTTCTCTCTTATCTACCTGCAGAAAATTACA
GGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAAAGAAACGGGAA
CATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAGGCCGATCGTGA
CCGTGATGGTTACCTGACAACAGATGAGTGTTTGGCCGCTTTAAAACAAC
TCGGTCACGTAATGGATGATAAAGGCATACGACGTGTGATGGGTTTGATG
GATAAGAATAATGACGGAATGATAACGTTTCAAGGTACCTTAGCATTTGT
TTTCTTTTCATGTTACACATTTCTTTTAATAAAAACATCCAAATGTTCTT
AACTTTTTGATTTTTAAACCAAATATTATTCTGATTTTCAGCATTTTGTG
AAGATTTATATTTGATTTCTACAGTCTGTTTCATTAAGTTTAAAGCCTGC
AGGGTTAGAGTAGAATCTCTAACCTTTCCCAGGCAAAAAAAAAAGTGAAG
CCACTTATTTCCCATTCAGAATGTGCCTGGAACGCGTCGCAATCATGACG
ACAGATTGTATCTAGTGGTTCCTTTGTTTTTGAGGACTACATTTTTTGAA
ATCTAGATCTTAATTTCAATCCAGCGTTTGTGTAAAAACCACGCGTGGGC
GTTCTGGATTGGAAATAAACGACTTCATTTCCTATCCAGGAGTCTTGAGC
CTAGCCCCTCGGGCTTAGAATAAGTCAATGGTTTGTACCTCTAAAGAATC
CTGCATTATAACACGCATGCGTAATTTGTCGTTCTTTAAACATATGTAGT
TAAACTGCGTGATAATCAAAGAGGAGTAAATTCGTACTTAGGGGTGGACA
AACTAACCGGGTCGGGGTTGGGTTATGGACGGCGAAATATGTCATATTTT
GTGAAATATGTTGTTCTTTTTGTCTATTTTTAGCCAATGTAGGATTCTTT
AAATTAAGCCTCTCATAAATCTTGTTTTCTTTTGTTTCAGAATTCTGCAA
GTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGATTGGATTTTCATA
AGCCAAAAGGGATGGCTTTTTTGTATATAGTTACTTGTAAATGTGGTTAA
AATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGCTTCTACTCTGGAA
CGCGTTTAATGTTTTTTAATGACACCCTATTCCTTAGCTCTGGTTTAGTC
GGCCCACTTTTAGCCCACTTTATGCCAACTCTAGCAATTAGAATAGGCAG
GGCTAAAAGTGGGCCGACTAAACCAGAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044235XLOC_044235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071169-exon-scaffold_6-1575043694:206266..206336TCONS_00071169-exon-scaffold_6-1575043694:206266..206336Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1575043694:203838..203871TCONS_00071169-exon-scaffold_6-1575043694:203838..203871Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1575043694:202930..203073TCONS_00071169-exon-scaffold_6-1575043694:202930..203073Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1575043694:200703..200945TCONS_00071169-exon-scaffold_6-1575043694:200703..200945Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1575043694:199705..199996TCONS_00071169-exon-scaffold_6-1575043694:199705..199996Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1510915933:206266..206336TCONS_00071169-exon-scaffold_6-1510915933:206266..206336Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1510915933:203838..203871TCONS_00071169-exon-scaffold_6-1510915933:203838..203871Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1510915933:202930..203073TCONS_00071169-exon-scaffold_6-1510915933:202930..203073Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1510915933:200703..200945TCONS_00071169-exon-scaffold_6-1510915933:200703..200945Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1510915933:199705..199996TCONS_00071169-exon-scaffold_6-1510915933:199705..199996Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1491911889:206266..206336TCONS_00071169-exon-scaffold_6-1491911889:206266..206336Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1491911889:203838..203871TCONS_00071169-exon-scaffold_6-1491911889:203838..203871Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1491911889:202930..203073TCONS_00071169-exon-scaffold_6-1491911889:202930..203073Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1491911889:200703..200945TCONS_00071169-exon-scaffold_6-1491911889:200703..200945Clytia hemisphaericaexon
TCONS_00071169-exon-scaffold_6-1491911889:199705..199996TCONS_00071169-exon-scaffold_6-1491911889:199705..199996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:199705..206336 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.89993	3.99684	1.78358	0	0	0	0.000167532	0	3.82578e-05	0	3.21615	2.31176	8.03562	3.73362	1.06992	8.13963	20.5641	16.7092	0	21.9273	31.3366	26.7273	4.15136e-05	2.24029	1.66836e-05	0.00253054	2.22563	2.48881	4.05894	7.83443e-05
Blast
[Close]
BLAST of TCONS_00071169 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.555e-18
Identity = 40/143 (27.97%), Postives = 77/143 (53.85%), Query Frame = 3 
Query:   84 LMEKELEEYRKYFWQQDVDGDGQLSKNEFNNMLRTMGLNLTRQEVENLFAKTDVDKNYRISFHEFAEAFIAKKREHVSGDRLRRVFQEADRDRDGYLTTDECLAALKQLGHVMDDKGIRRVMGLMDKNNDGMITFQEFCKFMA 512
            L E+++ E+++ F   D DGDG ++  E   ++R++G N T  E++++  + D D N  I F EF      K ++  S + +R  F+  D+D +GY++  E    +  LG  + D+ +  ++   D + DG + ++EF + M 
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
The following BLAST results are available for this feature:
BLAST of TCONS_00071169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM33.555e-1827.97Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
back to top