TCONS_00071165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071165
Unique NameTCONS_00071165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071165 ID=TCONS_00071165|Name=TCONS_00071165|organism=Clytia hemisphaerica|type=transcript|length=1225bp
CTGAAATCAATCAGTTTATGAACTTCTACGAGACTGCAGTGAGCTATTTC
AAAGGAATCATGGAAAATATCACAAACGCAACTAACCAATATTCCAGACC
TGCACCTTGTGCTCGGGATAAAGAAAATACAAAGAGAACAAAAAAAGTAG
AAGATTTTTTGAGTAAGATTGAAGTGGAAAAAGAATATGTCATTGGTCAT
TGGGTTGCTGATGAAGATTCACCAGAGATTTGGGAAGTTCGTCGTAAGGC
ACGGATCGGACGAAAAGTTCGTCAGCTGGTCAAAGATTACAAAACTCACA
TTAGACATTTCGATGCTAAACGTGGCCTGCTTCTTCGATCTACCTCTGAG
ACTGATTTCAAGAAACTACACAAGTATAAAAAACACAGACCAAGATTCGG
TTATGTTTTGCTTCGACAGAAATCTTCACCAGCTATTTTACCGTCACCAA
AGATGCAATTTACCTCAAAAGCAAAACGTTCTACCAAAAAGAAGCTCCAA
TTTTCGATACCAGGACATAAAAGAGTTTCCTCCATCCAAAAGACAAATAT
TAAACGGACAGAAACACACGTTGTGCTTTCCAGGCCCTCTGAAAAACCAT
GTCAAATTTCAACGAAACGAAAAATCAAGCTATCATTAACAAAAGATTTG
AAGGCGAATAGTAATCAGTCACAACAAATACCTGAGACCCAAAAAGACAG
CTTATTATTATATCTAAATTCTCACGGCACCGGCAAACAGCGGAACGATG
GAGATAAGACTGCACGTACAAAGAAACAGTCATGCATGCGCGCTTATAAG
AAGACTAAAAGTTTTGTCCTTGGTTTATTCAAAAGGAATAAAGACTtaat
tgtagtttagttttagaaattattttagaaaataCGCTAATTATTTACAA
ATGAAATTTATAGTAATCTTTTGTCTGATTCTTATTCAAAGATATTATGG
AAATTACTTGGGGAAACTGAGACAAGGCATACTGCATCATatgctttttt
atgagaaccTGATAATTTTGGCTCAGGTATTCTTATGTTGGACTTGAAAT
TCGTTAAAACCAATAAGATTTGAGGCTCAGATTGTATGATAATATGATTT
TAAGTTAGGTAGCATGTTAAATAAAATGATCTTTTATACAACAAAAAGTG
TGACTTTTGGCAAGGAAAGGAAACCTCTTCTGGATCCTACCCACCTTCTG
TACCGGAGATAAAACTAGACTGGCA
Run BLAST on NCBI

protein sequence of TCONS_00071165-protein

>TCONS_00071165-protein ID=TCONS_00071165-protein|Name=TCONS_00071165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
EINQFMNFYETAVSYFKGIMENITNATNQYSRPAPCARDKENTKRTKKVE
DFLSKIEVEKEYVIGHWVADEDSPEIWEVRRKARIGRKVRQLVKDYKTHI
RHFDAKRGLLLRSTSETDFKKLHKYKKHRPRFGYVLLRQKSSPAILPSPK
MQFTSKAKRSTKKKLQFSIPGHKRVSSIQKTNIKRTETHVVLSRPSEKPC
QISTKRKIKLSLTKDLKANSNQSQQIPETQKDSLLLYLNSHGTGKQRNDG
DKTARTKKQSCMRAYKKTKSFVLGLFKRNKDLIVV
Run BLAST on NCBI

transcript from alignment at scaffold_6:182748..184991-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071165 ID=TCONS_00071165|Name=TCONS_00071165|organism=Clytia hemisphaerica|type=transcript|length=2244bp|location=Sequence derived from alignment at scaffold_6:182748..184991- (Clytia hemisphaerica)
CTGAAATCAATCAGTTTATGAACTTCTACGAGACTGCAGTGAGCTATTTC
AAAGGAATCATGGAAAATATCACAAACGCAACTAACCAATGTACGGCTTC
TTTTCTACGATTTATTTTATTTTATTTCTCTTTCATATTTCCGGAATTAT
TTTAAGCTTGAACAATAAATCACGGCAAAACTGGCCAAATTCTACTACAA
TTGTAGGCTGCTGGTTCTGCGGATTCGTGCTATACTGCCTGAGGTTTTGT
AGAGGTCTGCAATTCAGACTACTACAGTTGACGCTTTTAAATTGATTTTA
AGGGGGGTCGATTTTCATCGGTTAAGGGAGCGTATCGAATAAAAGAGCGT
CGCTTATGAGTGTTTAATTAGAGAATGTCAACTGTATTTCTGAATCAACC
GGGCGAAACCACAAAATCAATGACATTATCAATGTTTTTTTCAAATCTTT
ACGAGCTATGTTTACCTTCTTATTTATCCCAAACTAATTAATTCAGTTTT
TCAGATGACTGCACCATAGAATCGACAATCGAACCAATCGAATTTAGCCT
AGTCAAATTGATCATAATTTGATTGTGAGACACAGTCGAATATTACTATT
CTATTATTATATTTTTAAATGCGAGTAGTGATCGTTGAGTCTGTTGCATA
AGGATTGCCTGGTTTCTAAAATTACAAGAGATAACTTTTTTCTCCTTTCT
TCAGATTCCAGACCTGCACCTTGTGCTCGGGATAAAGAAAATACAAAGAG
AACAAAAAAAGTAGAAGATTTTTTGAGTAAGATTGAAGTGGAAAAAGAAT
ATGTCATTGGTCATTGGGTTGCTGATGAAGGTAAATGGCCGCAAGATGTG
AATTTTTTACTAGTTTTTGTATATATATTAATACCAATACCATACAATCA
ATTTTATCTTCCCTGAAGATTAGCTTTAGAGAAAAATATATCCGATAATG
GTACTATAAGGTTTGCGGGGGTTAAACCAAATCTAATATAGGCTGTAAGA
CAGTCTTCTTTTCGTACTCACAAATCGGGAAATAAGTGGAATTATAATAA
TCTAGAAAAAAGCCGTGAGTTTAGTTATGCTAAGCGAACGTAGTGAACGT
AAGGCGAGCGTTAACTGCAGCGTCTTAGACGACTATTTTGATCAAATAGT
CTAAATATAATAAGGAAGCCTCCACTTGTTGCTTGTTGGCGAATAGGTTT
TTGTTACCACATACCTAATAAATCTTTCCTTTTAGATTCACCAGAGATTT
GGGAAGTTCGTCGTAAGGCACGGATCGGACGAAAAGTTCGTCAGCTGGTC
AAAGATTACAAAACTCACATTAGACATTTCGATGCTAAACGTGGCCTGCT
TCTTCGATCTACCTCTGAGACTGATTTCAAGAAACTACACAAGTATAAAA
AACACAGACCAAGATTCGGTTATGTTTTGCTTCGACAGAAATCTTCACCA
GCTATTTTACCGTCACCAAAGATGCAATTTACCTCAAAAGCAAAACGTTC
TACCAAAAAGAAGCTCCAATTTTCGATACCAGGACATAAAAGAGTTTCCT
CCATCCAAAAGACAAATATTAAACGGACAGAAACACACGTTGTGCTTTCC
AGGCCCTCTGAAAAACCATGTCAAATTTCAACGAAACGAAAAATCAAGCT
ATCATTAACAAAAGATTTGAAGGCGAATAGTAATCAGTCACAACAAATAC
CTGAGACCCAAAAAGACAGCTTATTATTATATCTAAATTCTCACGGCACC
GGCAAACAGCGGAACGATGGAGATAAGACTGCACGTACAAAGAAACAGTC
ATGCATGCGCGCTTATAAGAAGACTAAAAGTTTTGTCCTTGGTTTATTCA
AAAGGAATAAAGACTTAATTGTAGTTTAGTTTTAGAAATTATTTTAGAAA
ATACGCTAATTATTTACAAATGAAATTTATAGTAATCTTTTGTCTGATTC
TTATTCAAAGATATTATGGAAATTACTTGGGGAAACTGAGACAAGGCATA
CTGCATCATATGCTTTTTTATGAGAACCTGATAATTTTGGCTCAGGTATT
CTTATGTTGGACTTGAAATTCGTTAAAACCAATAAGATTTGAGGCTCAGA
TTGTATGATAATATGATTTTAAGTTAGGTAGCATGTTAAATAAAATGATC
TTTTATACAACAAAAAGTGTGACTTTTGGCAAGGAAAGGAAACCTCTTCT
GGATCCTACCCACCTTCTGTACCGGAGATAAAACTAGACTGGCA

Coding sequence (CDS) from alignment at scaffold_6:182748..184991-

>TCONS_00071165 ID=TCONS_00071165|Name=TCONS_00071165|organism=Clytia hemisphaerica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_6:182748..184991- (Clytia hemisphaerica)
ATTCACCAGAGATTTGGGAAGTTCGTCGTAAGGCACGGATCGGACGAAAA
GTTCGTCAGCTGGTCAAAGATTACAAAACTCACATTAGACATTTCGATGC
TAAACGTGGCCTGCTTCTTCGATCTACCTCTGAGACTGATTTCAAGAAAC
TACACAAGTATAAAAAACACAGACCAAGATTCGGTTATGTTTTGCTTCGA
CAGAAATCTTCACCAGCTATTTTACCGTCACCAAAGATGCAATTTACCTC
AAAAGCAAAACGTTCTACCAAAAAGAAGCTCCAATTTTCGATACCAGGAC
ATAAAAGAGTTTCCTCCATCCAAAAGACAAATATTAAACGGACAGAAACA
CACGTTGTGCTTTCCAGGCCCTCTGAAAAACCATGTCAAATTTCAACGAA
ACGAAAAATCAAGCTATCATTAACAAAAGATTTGAAGGCGAATAGTAATC
AGTCACAACAAATACCTGAGACCCAAAAAGACAGCTTATTATTATATCTA
AATTCTCACGGCACCGGCAAACAGCGGAACGATGGAGATAAGACTGCACG
TACAAAGAAACAGTCATGCATGCGCGCTTATAAGAAGACTAAAAGTTTTG
TCCTTGGTTTATTCAAAAGGAATAAAGACTTAATTGTAGTTTAGATTCCA
GACCTGCACCTTGTGCTCGGGATAAAGAAAATACAAAGAGAACAAAAAAA
GTAGAAGATTTTTTGAGTAAGATTGAAGTGGAAAAAGAATATGTCATTGG
TCATTGGGTTGCTGATGAAGGAAATCAATCAGTTTATGAACTTCTACGAG
ACTGCAGTGAGCTATTTCAAAGGAATCATGGAAAATATCACAAACGCAAC
TAACCAATATTCACCAGAGATTTGGGAAGTTCGTCGTAAGGCACGGATCG
GACGAAAAGTTCGTCAGCTGGTCAAAGATTACAAAACTCACATTAGACAT
TTCGATGCTAAACGTGGCCTGCTTCTTCGATCTACCTCTGAGACTGATTT
CAAGAAACTACACAAGTATAAAAAACACAGACCAAGATTCGGTTATGTTT
TGCTTCGACAGAAATCTTCACCAGCTATTTTACCGTCACCAAAGATGCAA
TTTACCTCAAAAGCAAAACGTTCTACCAAAAAGAAGCTCCAATTTTCGAT
ACCAGGACATAAAAGAGTTTCCTCCATCCAAAAGACAAATATTAAACGGA
CAGAAACACACGTTGTGCTTTCCAGGCCCTCTGAAAAACCATGTCAAATT
TCAACGAAACGAAAAATCAAGCTATCATTAACAAAAGATTTGAAGGCGAA
TAGTAATCAGTCACAACAAATACCTGAGACCCAAAAAGACAGCTTATTAT
TATATCTAAATTCTCACGGCACCGGCAAACAGCGGAACGATGGAGATAAG
ACTGCACGTACAAAGAAACAGTCATGCATGCGCGCTTATAAGAAGACTAA
AAGTTTTGTCCTTGGTTTATTCAAAAGGAATAAAGACTTAATTGTAGTTT
AGATTCCAGACCTGCACCTTGTGCTCGGGATAAAGAAAATACAAAGAGAA
CAAAAAAAGTAGAAGATTTTTTGAGTAAGATTGAAGTGGAAAAAGAATAT
GTCATTGGTCATTGGGTTGCTGATGAAGGAAATCAATCAGTTTATGAACT
TCTACGAGACTGCAGTGAGCTATTTCAAAGGAATCATGGAAAATATCACA
AACGCAACTAACCAATATTCACCAGAGATTTGGGAAGTTCGTCGTAAGGC
ACGGATCGGACGAAAAGTTCGTCAGCTGGTCAAAGATTACAAAACTCACA
TTAGACATTTCGATGCTAAACGTGGCCTGCTTCTTCGATCTACCTCTGAG
ACTGATTTCAAGAAACTACACAAGTATAAAAAACACAGACCAAGATTCGG
TTATGTTTTGCTTCGACAGAAATCTTCACCAGCTATTTTACCGTCACCAA
AGATGCAATTTACCTCAAAAGCAAAACGTTCTACCAAAAAGAAGCTCCAA
TTTTCGATACCAGGACATAAAAGAGTTTCCTCCATCCAAAAGACAAATAT
TAAACGGACAGAAACACACGTTGTGCTTTCCAGGCCCTCTGAAAAACCAT
GTCAAATTTCAACGAAACGAAAAATCAAGCTATCATTAACAAAAGATTTG
AAGGCGAATAGTAATCAGTCACAACAAATACCTGAGACCCAAAAAGACAG
CTTATTATTATATCTAAATTCTCACGGCACCGGCAAACAGCGGAACGATG
GAGATAAGACTGCACGTACAAAGAAACAGTCATGCATGCGCGCTTATAAG
AAGACTAAAAGTTTTGTCCTTGGTTTATTCAAAAGGAATAAAGACTTAAT
TGTAGTTTAGATTCCAGACCTGCACCTTGTGCTCGGGATAAAGAAAATAC
AAAGAGAACAAAAAAAGTAGAAGATTTTTTGAGTAAGATTGAAGTGGAAA
AAGAATATGTCATTGGTCATTGGGTTGCTGATGAAGGAAATCAATCAGTT
TATGAACTTCTACGAGACTGCAGTGAGCTATTTCAAAGGAATCATGGAAA
ATATCACAAACGCAACTAACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044233XLOC_044233Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071165-proteinTCONS_00071165-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071165-exon-scaffold_6-1575043694:184902..184991TCONS_00071165-exon-scaffold_6-1575043694:184902..184991Clytia hemisphaericaexon
TCONS_00071165-exon-scaffold_6-1575043694:184162..184287TCONS_00071165-exon-scaffold_6-1575043694:184162..184287Clytia hemisphaericaexon
TCONS_00071165-exon-scaffold_6-1575043694:182748..183756TCONS_00071165-exon-scaffold_6-1575043694:182748..183756Clytia hemisphaericaexon
TCONS_00071165-exon-scaffold_6-1510915933:184902..184991TCONS_00071165-exon-scaffold_6-1510915933:184902..184991Clytia hemisphaericaexon
TCONS_00071165-exon-scaffold_6-1510915933:184162..184287TCONS_00071165-exon-scaffold_6-1510915933:184162..184287Clytia hemisphaericaexon
TCONS_00071165-exon-scaffold_6-1510915933:182748..183756TCONS_00071165-exon-scaffold_6-1510915933:182748..183756Clytia hemisphaericaexon
TCONS_00071165-exon-scaffold_6-1491911889:184902..184991TCONS_00071165-exon-scaffold_6-1491911889:184902..184991Clytia hemisphaericaexon
TCONS_00071165-exon-scaffold_6-1491911889:184162..184287TCONS_00071165-exon-scaffold_6-1491911889:184162..184287Clytia hemisphaericaexon
TCONS_00071165-exon-scaffold_6-1491911889:182748..183756TCONS_00071165-exon-scaffold_6-1491911889:182748..183756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:182748..184991 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0897879	0.168117	0	0.0364484	0	0	0	0	0	0	0.0262136	0	0	0	0.0337617	0.0988067	0	0	0.149964	0.267679	0.0478809	0	0.0387574	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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