TCONS_00071163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071163
Unique NameTCONS_00071163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071163 ID=TCONS_00071163|Name=TCONS_00071163|organism=Clytia hemisphaerica|type=transcript|length=800bp
AGTAGGTATATGTTGACATTGCTTATTGATTGCTAAATTTATTCATCTTC
ATTGATAGTGAAGTAAAGTAAAgaatggatttcttttgtttttagataCT
GAAGAATCCTTCACCAccttgccagtagtggcaaaacAAAAAACTGGTAA
GGATGTaacaacaacaaagaaaagttttgaagAGATTTCGATGCAAGTTG
AGAATGAAAGCCCTTCCAAAGAAAAGAATGTTTCATCAAATGAACCAAAA
AGTGCGACTCCAAAAAAGAATCTAACAGAGTTTATTTCAACTATTGGTCT
TTCAAAAGTCACacaagaaaatgttcaagagaAAGCAGTTAAACGAAGCA
TGGAAACGCAAGCTGGTAGTGCAAAGGTGGTCAAGAAAAAACGGTCTAGg
ctaaaaaataacaacaagGAACCCAATATACTGGAAGAAGGTGTATCAAA
TCGTTCAATGAGAACTCGATCGCGGTCAAACAAAACAATTGATATTTCGC
TGGCAGCTTATTGTAGCATGATCAATAAATCCATCAATCAGACAACGGAT
GTTGACCAGGATGATGCTGGTGTTGAAAAACATCCATCTCCCATATCAAA
AGCTTCTGCAAAGACCAACAATGTCACTACCTTTAACAATCAAAGTATTG
TCAAGAGAAACAATAGGAAGAATATCAGCAAGAATTTACAAATCATCTTT
AATGAAGAAAGTATCTGCAAACAAGATTTTGTTCCTTCTGAACCATTaac
caaaaaagCAAAAAGAGCCAAGCGTAAGCGGGTGTGCATGCCGACAAGTA
Run BLAST on NCBI

transcript from alignment at scaffold_6:162993..167774-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071163 ID=TCONS_00071163|Name=TCONS_00071163|organism=Clytia hemisphaerica|type=transcript|length=4782bp|location=Sequence derived from alignment at scaffold_6:162993..167774- (Clytia hemisphaerica)
AGTAGGTATATGTTGACATTGCTTATTGATTGCTAAATTTATTCATCTTC
ATTGATAGTGAAGTAAAGTAAAGAATGGATTTCTTTTGTTTTTAGATACT
GAAGAATCCTTCACCACCTTGCCAGTAGTGGCAAAACAAAAAACTGGTAA
GGATGTAACAACAACAAAGAAAAGTTTTGAAGGTAAGTAAGTTTAACAAG
ACAAGTGCTTTATCAGTAAAGGCGACCATGAAAAATTACTCTCATCAAAA
GTCCAACACCACTTTCTTTTGCTGTTTTTGAACTTCTGACTATGAGTTTG
TTAGTAACGATTAAAAAATTACAGTCAGAATTTAAATCTGTTAAATTTAC
TCATTCAGAGATTTCGATGCAAGTTGAGAATGAAAGCCCTTCCAAAGAAA
AGAATGTTTCATCAAATGAACCAAAAAGTGCGACTCCAAAAAAGAATCTA
ACAGGTTAATTATAATTCCTTCAAACCTAGAAAGATTAATAGTGAGCCTT
GTTCTTCCATTTCAGATTGAGTCATATGTTTTGTGAAAGTTAGAAATAAC
AAATTCTGTCTGAAATGGCAATGGCCTAAACTAAAGTTTGAAAGCGTCTA
TTAAACAAAAATGAGATTTTCAACTCCGACACTATTATTATTATTATTAT
CTACTCTCATAGTTGACCTTTTTCATAAATTACGTCACAAGCAACGCTTA
CCTCCTTTTTAAAGTATTGCCATGGTAATTGATTCCCAGAGGAGTTTAAA
AGCAGTTTACTCTATTTCAGTAACACTTGAAGACTATAATCATCTTTTTA
ATGGCTTCAAAACGAGTCAGCTGTTGAACCAAGAACTCATGAAAAAGCCT
AATAATCCGTTTACCTGTTTTTCACTCACCCTTTCTAATTGAAAACTAAC
TTCATAACTCCATTTATAATAAAAGCAACACCACTTTATTTCAATTTTTC
GTAGAGTTTATTTCAACTATTGGTCTTTCAAAAGTCACACAAGAAAATGT
TCAAGAGAAAGCAGTTAAACGAAGCATGGAAACGCAAGCTGGTAGTGCAA
AGGTGGTCAAGAAAAAACGGTCTAGGCTAAAAAATAACAACAAGGAACCC
AATATACTGGAAGAAGGTGTATCAAATCGTTCAATGAGAACTCGATCGCG
GTCAAACAAAACAATTGATATTTCGCTGGCAGCTTATTGTAGCATGATCA
ATAAATCCATCAATCAGACAACGGATGTTGACCAGGATGATGCTGGTGTT
GAAAAACATCCATCTCCCATATCAAAAGGTTTGTATATCAAGATTTTGAT
ATAATGATGATGACTGGCTTCTCCTTACAGAGGATGCTAGATTCTATATT
GAGCAGCCTAGGAGTCGTCTCGTTATTACTGTCTTACACTATAGTTTATA
CTGCCTGCTCTGGCTCACTTTGATATCATGGTATGTCCTCTAGAAGCAGA
ATCTGCGCACTTTTTGGTATTTACATGTCGACGAAACATAGATGGATTTA
ACAGGCTAGGTATATAAAAGGCTATATATAATATTAGCAGTCATTGAAAG
AGTGGCTGACACGGTGTATAAATTAATTTCAAAATCAAACAAAATTGCCA
CTGAAATTTTGAAATTAACCTGTCAAATTAAGACTTCATTGACACAAAAA
TTCATACACACCGCCAAGCATTTTCAGAACACTTTAACTGATGTCAATAT
CTAATTGATTTTGTAGCTTCTGCAAAAACCAATAACACAAAGAAAAACAA
TCAAAGCATTGTCAAGAGAAACAATAGGAAGAATATCAGCAAGAATTTAC
AAGTCACCTTTAATGAAGAAAGTATCTGCAAACAAGTTTTTGTTCCTTCT
GAACCATTAACCAAAAAAGGTTTGTTTAAGTCGTGGCTAAATTATTCAGT
TCTGTCTAATAGCGATTCTTAGCCTTACCAAGTAAATTTCCTATTTAGAA
AAATCATGTTGCAGCTTTTGTTTATGTCTTAGCTTAAGTTTTTTTACTCA
AGGTTTTACATTGATTGATTGAAAATAATTAATGAAAGTTTTCTTTGGTA
TTTTTAAAAGAGTTAAAAGTTGGGGACTGATGACGAGTGGACATTTTTAG
TTGAATTCGATAATCATCTATTGGATTTATATATATAAATTTTACCAAAT
ACTATTCCTAGTAATATAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCAA
AATTTGGGAAAACAGTTACTCCACCAGTGGACTAACTGCAACATGGGTGG
TGCCTTAACATGAAATTTGGAAAATCAGTTATTATTTTGTGGAGTAACTG
TTAAAATTTTAGCTTATTTCTGCAAAGATTGTGAAAATTTTTCTTATAAA
AAATAGAAATTTTTTTTTCTGTCCTAAAAACCTTAAAGATACTCATAGTT
CCAGCTGATAGTTCTCCTTAATAATAAGTGTATCCAGCAGCAGGTGTATC
TGAGTTTATTTTTCATAGTTTGTGTTCTCTATCTATTCCAAAACATTGTA
TTTACACAGGTTTGTTCAGGTTTTTACCAATACTTCCATCAGGTGTTGTT
TTCCTTTTCAATCAAAAACGGACAGATTTTTTTCAATCAATGTGAAGAGT
TTTTAATTGAACTAACCATTGATTTGTACAGTTTTAATAAAGACATCTCA
ACTATATTTATATTTAGAATTTTTGTTAGAAATTTAATTCAATGTTTTGA
AAAGTACTGTATTGAAGTTCTCAAAGTTATATCGCTTGAGTAGGTTTGAA
TGTTTTGGGAGTTGGGAAAATGTTAAAAGTAATTATTTATGAATTTGATT
AATGGAGATTATATGTACCTTTGTTTTTTTTAGAAATAATTAGAAAGAAA
CAGATATAAAATGGATAGAGTAGAAAATGCAACAGATAAAGATTTAGCAG
TATCTGACAGTGACAAGGAGAATGAAGAGGAAGAAGAAATTGTTAATAAA
TGCAGCTTTTGTGAAAAAACTTTTCATGGAGCTGGTCATAACAGAACTAA
TTTTGAGCGTCATGTTGAGTCTNAAATTCATACGCACCAAGTTTTAGGAT
TTTCAGCACGCTTTAATTGATGTGAATATCTACTTAATATTGTAGCTTCT
GCAAAGACCAACAATGTCACTACCTTTAACAATCAAAGTATTGTCAAGAG
AAACAATAGGAAGAATATCAGCAAGAATTTACAAATCATCTTTAATGAAG
AAAGTATCTGCAAACAAGATTTTGTTCCTTCTGAACCATTAACCAAAAAA
GGTTTGTTTAAGTCGTTTTCAAAATTATTTAGTTCTATCTAATAACCATT
CTTAAGCCTTATCAAGTAAATTTTCTATTTAGAAAAAACAGGTATTTCAA
TTGTTTTTTGGACCTACCCCGGAGGTCCTTTTAATTTTTCGTTCGTTCGT
TCGTCCGTTCGTCCGTTCGTCTGTTCTCTGTTACCAGCTTTTCTCGGGAT
TGGCTCATTAGTTATTTCAGATTTTTTGCACAGTGATGCAAAATGGTTAT
TCCCAAAAAGCGACGGAGCCCGATTTTCGAAAAGATTTAGGCCAAAAAGT
GCCTAAAAATGGGGTTTTTTGGACTTGGACTAATGTTGCTTGTTTGATCA
AAAATTTCTAGCAGCTTCTGTTCTGTCTTTACAATTTTTTTTTCGAGGTT
TATTGACTGAAATTAATTAATGAAAGCTTTCTTTGGAATCTTTAAACGAG
ATAAATGAAATAAATGAAAAATTGTTCTTTTCTTTTCCAGCAAAAAGAGC
CAAGCGTAAGCGGGTGTGCATGCCGACAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044231XLOC_044231Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071163-exon-scaffold_6-1575043694:167593..167774TCONS_00071163-exon-scaffold_6-1575043694:167593..167774Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1575043694:167321..167416TCONS_00071163-exon-scaffold_6-1575043694:167321..167416Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1575043694:166497..166820TCONS_00071163-exon-scaffold_6-1575043694:166497..166820Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1575043694:163524..163679TCONS_00071163-exon-scaffold_6-1575043694:163524..163679Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1575043694:162993..163034TCONS_00071163-exon-scaffold_6-1575043694:162993..163034Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1510915933:167593..167774TCONS_00071163-exon-scaffold_6-1510915933:167593..167774Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1510915933:167321..167416TCONS_00071163-exon-scaffold_6-1510915933:167321..167416Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1510915933:166497..166820TCONS_00071163-exon-scaffold_6-1510915933:166497..166820Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1510915933:163524..163679TCONS_00071163-exon-scaffold_6-1510915933:163524..163679Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1510915933:162993..163034TCONS_00071163-exon-scaffold_6-1510915933:162993..163034Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1491911889:167593..167774TCONS_00071163-exon-scaffold_6-1491911889:167593..167774Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1491911889:167321..167416TCONS_00071163-exon-scaffold_6-1491911889:167321..167416Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1491911889:166497..166820TCONS_00071163-exon-scaffold_6-1491911889:166497..166820Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1491911889:163524..163679TCONS_00071163-exon-scaffold_6-1491911889:163524..163679Clytia hemisphaericaexon
TCONS_00071163-exon-scaffold_6-1491911889:162993..163034TCONS_00071163-exon-scaffold_6-1491911889:162993..163034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:162993..167774 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.514417	0.545322	5.86894	11.6819	82.6846	82.8778	44.7114	58.9558	15.5467	14.5947	16.0916	14.4776	8.81798	6.30354	1.66924	1.02022	3.89475	5.72611	1.84349	1.31488	1.44482	0.767913	1.62676	3.65076	29.0176	46.0201	1.58649	0.576128	0.438018	0.880228
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top