TCONS_00071158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071158
Unique NameTCONS_00071158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2217

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071158 ID=TCONS_00071158|Name=TCONS_00071158|organism=Clytia hemisphaerica|type=transcript|length=2217bp
aaaatacaatattatatttctttggtttaCTGACTCTCTACAAAAtctgt
ttttccctttttctaaaCATAGAGAGGGAAGCATTTTAAGCTTTAAAGCG
GCGCATCAAGGTACCGCGAAAGCTGCCTTCAAGAATTCCTTCCTTTGATT
TGCAAACTGATTTACAGATTGCAAAACGAAAGATTTCCGACGTTCAAGAA
GTTTGATATAAACGATGCTGAAAGTGTGTAAACAATGGAAACGCTTTGGT
GAACGCAATAATAAACTTTTAGAAGTAATTTATCCTATTAATGGGGCGTT
CCATTTAAACCAAATACGCCAGAAAGAAGATGGGACAAAATGCTCAATCT
AAGATGTGGTGGTTTGCCTTGGTGTTGTTGATTCATGGGTCTCACGGAGA
TGCTCAGCATGCTGCCAAGAAATCACTACACCGAAGATTAAGTGATTATC
CTGTACTCAAACGTTGGGAGATACCAATCAAAGCTAACGTCGTTGGTCGA
AGAAACAAAGACTTATGGGGAGACTCGAAAAAGAAACGTTCATTTTGGGA
GGCAAAGCCCCAGTTTACACTACATGAGCTTGAAATGGAAAACGATCCAG
AGAAGATATATATGGATTTACACTATTCAAGAAATATGCTTGAAGACGAT
TCTGACGCAGATAAAAGTATTGCACAATATAAGAAAGATACATTGGAGTC
GCCACCGTTGTTAAAGACTTCTGCGAAGAAGGCAGAGGTTAAAAAGAAAG
ATGGTAAAAAGTTACTCCAACAAAAAGTAACAAAACATAAGGAAGCAGAC
AAGAAAAGATTAATTGCATTAAAACCTTTCTTGTCAGCCAAACACGTGAC
AACATCaacgaaaaagaagaagaaaaagagaagCAGAAGATCATTGGAGG
ATGAGGAGTTTGAAGAAATTAATACTGATGATGGAGACTTTTCAATGGCG
GGTTTCCAAGATGGTTTGATAGATGAAAGAGAAGATGCAGAGAGAGTCAA
ACGTGATTCTGAATCAATCGCTAACTTCTATTTTGACCAATACGATGATG
ATGGTGTTGATGGTAACGAAGCTGAAACTTACAGTAAAAATAATGGTAAT
AATGTTGATGATGATACCCCTTCTCAAGATCGACAAAAAAGATCCATTGT
TAACAAACCTAAAGATCATAAACTTGCCGTTGATAATTTGAAACGATCAC
GTACAGAAAATATTGCAAAACTGTTTCATAAATCAGTAGCAAAGACACAT
TCTGCCATCGATGCTTCAGCCAAACGATCAAGTTTGTCTTCTAATATTGT
TACTTCCAAGGCTGTTAGTAAAACTGACGGTGATTCTGCTGAGCAAAGAA
AAGCTAAAGCTTTGATTCAAAAGGCATTTTTCAGTTCAAAACAATAAAGA
AGATAGTCCCTAATGTTGATGTTAAAGTTATATCAAAGAATCTTCTAGAA
CAAGATATTGGAGCTGTACCAGGTcttaaaaaagatgaaaattcagTAAG
CAGGCAACATATAGCACATCCAGAAAAATCAACGGATAGTATAAACACAG
CAAATGTTGCACGTGCAGTTGCAGTGGCAATGGAACAATTAAAAAGAGAT
AAAATGTGGGGCAAAGTATTTGTCCATGTTAGACCAAGTGGTGAACTTAA
GGTTATGGTACAAGAAACTAAAAAGATGGAAGAAGAGACTTGAAACTATA
TTGATATCTTGAATAAATAATCTTTTGTACATTTGTATTAAACGTTTTTA
CTTTTCTAGAATTTTACAGTGGGGATTAAGATTTCTATCGAAACCCTAAC
GAGCGAGGATAAAACTCTTTTGTTCCGAGCTCAAAATGTCCAGTGGAGAT
GGATTTGGAGTGCAAGttcttttcatcaatttttgaatgaggatgcaatc
aaaatgaatttccCAGTGGACCTCAAATTGTAGAAAGCTCTTTCCAACTG
GGGATGAAATTCTAACCAAATCTCCCGATGCGCTTGGGGTTCCCACCGGG
TTCGTGACAAAGGGTTTTTTCTAGATATGACAGTAATAACCAGTAGTGAA
GGCattaaattaattttgttatctttaaattttttagacCTAGTTCTTAT
AGtaatatattgaaaataaaacttacgaatactttttttaaatgcacCTT
TAACAAGTTTATAGAAATCAAGTAAGGATTAATCATTGTTATTAATATTC
CAAGGGTTCCAAAATCc
Run BLAST on NCBI

transcript from alignment at scaffold_6:69787..73586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071158 ID=TCONS_00071158|Name=TCONS_00071158|organism=Clytia hemisphaerica|type=transcript|length=3800bp|location=Sequence derived from alignment at scaffold_6:69787..73586- (Clytia hemisphaerica)
AAAATACAATATTATATTTCTTTGGTTTACTGACTCTCTACAAAATCTGT
TTTTCCCTTTTTCTAAACATAGAGAGGGAAGCATTTTAAGCTTTAAAGCG
GCGCATCAAGGTACCGCGAAAGCTGCCTTCAAGAATTCCTTCCTTTGATT
TGCAAACTGATTTACAGATTGCAAAACGAAAGATTTCCGACGTTCAAGAA
GTTTGATATAAACGATGCTGAAAGTGTGTAAACAATGGAAACGCTTTGGT
GAACGCAATAATAAACTTTTAGAAGTAATTTATCCTATTAATGGGGCGTT
CCATTTAAACCAAATACGCCAGAAAGAAGATGGGACAAAATGGTAGGGTT
AAAGTACAGATGAATTGTATCAGCATTGGACAATGAAATATGAAAATAGA
TGACTAAAATTGATAAAAATTGCTATAAGTATAAAAATATGTTGAATTAT
ATTGAAGTTCTTTGAAATTTTGTTTCGTTTAGCATTAAAATTTCGATTTT
TTTATATTATAGCTTATAAGCTTCTCAAAGCTAAAAAAACCTCAATCCAA
GCTAGGCTGAAAGGATTCTTCTATATTTCAGCTCAATCTAAGATGTGGTG
GTTTGCCTTGGTGTTGTTGATTCATGGGTCTCACGGAGATGCTCAGCATG
GTAAGATCTTCTTGTTTAAAAAAATTAGCTGTTGGATATTTGCATATTAG
CATATCATAAAATTCCAAATTAAAGTATTCAGCCTTGTCACATTCTGTAC
AAGTACTACAATCCCGGTCATAATATTTAAGAAAAAAAGGGAAATTCCCA
CGAAATCTCATAGCCACAAACGATTTGGAAGCGCTTTAACTTACTTAGGA
TCTGAGGATCCAAAAGTTCAAGAATGGTCCAAAAGGGCTGCGAATATAGC
CTGGAAGTCTATAAACCCCACTCAATTTGCAATATTCGATTAAATTTAAC
AATGAAATAGCCCAAAAGCGACTTTCTCGCCCGAACTTTAATATGCTAAA
AACGAGGAATTAGCCAAATTTATCAATATATTTTGATATTGTAGGTTTTT
ATTAATAATTGGGGAACATCCTACACTGTCGAATTAAACATCTACTCATA
ATACACCACATTTTACACCTCCTTCTCGGTGGAACCAATTCAGCCAGTAG
GGGTAAAAATAACGGACCAAAACTCGATGGGGATTAATATTCTCATTTTC
TTATGGTTGGGGATTTGAATTCTATTGTTTTTGAGCCAGAAAATCCAGTG
GGGATGGAAAAAGTAGCACAATATTTTGCAGTGACGATTTAATTATCTGA
TTATTTTCAGCGAAGGCAAGAGTTAAAATATAATTTTCTACTGGGTACGA
TATTTTGGCCAATTTTTCCAATGAGTCTCATCGGGTATGTGAGAAGGGGG
TATCATTAAAATGTGTTCACACCACGTTAAATTCGTAGTCTGATTGTGTA
TGTAACGGTGGACGTTATGGCCCTATGACTAACCATATATCTATAACCAG
ATATCCAAGCCTTGTCTTTCATCTAACTACAGCTTCAAGGAGTGCCTAAA
GAATTTTCATATTCAAGGCCATTCTTCACAGTGGCTTTTTGATGCATTAA
ACTGTCTCGTTTCAATGTTTTGTATTCTTATTTTTAAATTTCTTTCGTGA
TCCTGAAAATAGAAAAGTAAGTTAAAATATACCGTAATCAAAATCTGGGA
AAGTTTGATTAGCTCTTGATCTATTGCTAGGGGCTCATCTAAAGAACATC
CCCACCCCTTTACGAATATAATTTATTTCACTTTTTTAAAACTCGATCAT
CAATCGGCTGAAATCTAAAAACTCGTAGCATCAAAAGCTTTACGTTTTTA
TTGTAATATTTACATAATCTATGTTTAGCTGCCAAGAAATCACTACACCG
AAGATTAAGTGATTATCCTGTACTCAAACGTTGGGAGATACCAATCAAAG
CTAACGTCGTTGGTCGAAGAAACAAAGACTTATGGGGAGACTCGAAAAAG
AAACGTTCATTTTGGGAGGCAAAGCCCCAGTTTACACTACATGAGCTTGA
AATGGAAAACGATCCAGAGAAGATATATATGGATTTACACTATTCAAGAA
ATATGCTTGAAGACGATTCTGACGCAGATAAAAGTATTGCACAATATAAG
AAAGATACATTGGAGTCGCCACCGTTGTTAAAGACTTCTGCGAAGAAGGC
AGAGGTTAAAAAGAAAGATGGTAAAAAGTTACTCCAACAAAAAGTAACAA
AACATAAGGAAGCAGACAAGAAAAGATTAATTGCATTAAAACCTTTCTTG
TCAGCCAAACACGTGACAACATCAACGAAAAAGAAGAAGAAAAAGAGAAG
CAGAAGATCATTGGAGGATGAGGAGTTTGAAGAAATTAATACTGATGATG
GAGACTTTTCAATGGCGGGTTTCCAAGATGGTTTGATAGATGAAAGAGAA
GATGCAGAGAGAGTCAAACGTGATTCTGAATCAATCGCTAACTTCTATTT
TGACCAATACGATGATGATGGTGTTGATGGTAACGAAGCTGAAACTTACA
GTAAAAATAATGGTAATAATGTTGATGATGATACCCCTTCTCAAGATCGA
CAAAAAAGATCCATTGTTAACAAACCTAAAGATCATAAACTTGCCGTTGA
TAATTTGAAACGATCACGTACAGAAAATATTGCAAAACTGTTTCATAAAT
CAGTAGCAAAGACACATTCTGCCATCGATGCTTCAGCCAAACGATCAAGT
TTGTCTTCTAATATTGTTACTTCCAAGGCTGTTAGTAAAACTGACGGTGA
TTCTGCTGAGCAAAGAAAAGCTAAAGCTTTGATTCAAAAGGCATTTTTCA
GTTCAAAACATGGGCACTTGGTACCAAAAACCTCCGTTCGTCATATAATT
CCACAAAGCTCANAAACATGGGCACTTAGTACCAAAAACCTCCGTTCGTC
ATATAATCCCAGAAAGCTCGACAACAATAAAGAAGATAGTCCCTAATGTT
GATGTTAAAGTTATATCAAAGAATCTTCTAGAACAAGATATTGGAGCTGT
ACCAGGTCTTAAAAAAGATGAAAATTCAGTAAGCAGGCAACATATAGCAC
ATCCAGAAAAATCAACGGATAGTATAAACACAGCAAATGTTGCACGTGCA
GTTGCAGTGGCAATGGAACAATTAAAAAGAGATAAAATGTGGGGCAAAGT
ATTTGTCCATGTTAGACCAAGTGGTGAACTTAAGGTTATGGTACAAGAAA
CTAAAAAGATGGAAGAAGAGACTTGAAACTATATTGATATCTTGAATAAA
TAATCTTTTGTACATTTGTATTAAACGTTTTTACTTTTCTAGAATTTTAC
AGTGGGGATTAAGATTTCTATCGAAACCCTAACGAGCGAGGATAAAACTC
TTTTGTTCCGAGCTCAAAATGTCCAGTGGAGATGGATTTGGAGTGCAAGT
TCTTTTCATCAATTTTTGAATGAGGATGCAATCAAAATGAATTTCCCAGT
GGACCTCAAATTGTAGAAAGCTCTTTCCAACTGGGGATGAAATTCTAACC
AAATCTCCCGATGCGCTTGGGGTTCCCACCGGGTTCGTGACAAAGGGTTT
TTTCTAGATATGACAGTAATAACCAGTAGTGAAGGCATTAAATTAATTTT
GTTATCTTTAAATTTTTTAGACCTAGTTCTTATAGTAATATATTGAAAAT
AAAACTTACGAATACTTTTTTTAAATGCACCTTTAACAAGTTTATAGAAA
TCAAGTAAGGATTAATCATTGTTATTAATATTCCAAGGGTTCCAAAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044229XLOC_044229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071158-exon-scaffold_6-1575043694:73245..73586TCONS_00071158-exon-scaffold_6-1575043694:73245..73586Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1575043694:72937..73005TCONS_00071158-exon-scaffold_6-1575043694:72937..73005Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1575043694:70728..71708TCONS_00071158-exon-scaffold_6-1575043694:70728..71708Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1575043694:69787..70611TCONS_00071158-exon-scaffold_6-1575043694:69787..70611Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1510915933:73245..73586TCONS_00071158-exon-scaffold_6-1510915933:73245..73586Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1510915933:72937..73005TCONS_00071158-exon-scaffold_6-1510915933:72937..73005Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1510915933:70728..71708TCONS_00071158-exon-scaffold_6-1510915933:70728..71708Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1510915933:69787..70611TCONS_00071158-exon-scaffold_6-1510915933:69787..70611Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1491911889:73245..73586TCONS_00071158-exon-scaffold_6-1491911889:73245..73586Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1491911889:72937..73005TCONS_00071158-exon-scaffold_6-1491911889:72937..73005Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1491911889:70728..71708TCONS_00071158-exon-scaffold_6-1491911889:70728..71708Clytia hemisphaericaexon
TCONS_00071158-exon-scaffold_6-1491911889:69787..70611TCONS_00071158-exon-scaffold_6-1491911889:69787..70611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:69787..73586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00133586	0	0	0.0953062	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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