|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071144 ID=TCONS_00071144|Name=TCONS_00071144|organism=Clytia hemisphaerica|type=transcript|length=2476bpRun BLAST on NCBI protein sequence of TCONS_00071144-protein >TCONS_00071144-protein ID=TCONS_00071144-protein|Name=TCONS_00071144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp MGSSYSSISDLPQNEFLLKLCNEVPIKRDDKFWDQLLSFKFSTPLERSNSRun BLAST on NCBI transcript from alignment at scaffold_6:84974..103352+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071144 ID=TCONS_00071144|Name=TCONS_00071144|organism=Clytia hemisphaerica|type=transcript|length=18379bp|location=Sequence derived from alignment at scaffold_6:84974..103352+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_6:84974..103352+ >TCONS_00071144 ID=TCONS_00071144|Name=TCONS_00071144|organism=Clytia hemisphaerica|type=CDS|length=31152bp|location=Sequence derived from alignment at scaffold_6:84974..103352+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071144 vs. Swiss-Prot (Human)
Match: DYM (Dymeclin OS=Homo sapiens GN=DYM PE=1 SV=1) HSP 1 Score: 400.593 bits (1028), Expect = 2.099e-127 Identity = 254/678 (37.46%), Postives = 393/678 (57.96%), Query Frame = 2
Query: 137 MGSSYSSISDLPQNEFLLKLCNEVPIKRDDKFWDQLLSFKFSTPLERSNSRLIRENTEKLCSSIASNNKVTANFTTLVDVAIFYGREMITNRENLKEDESSCNKCRNALMIIRLCC------------EHMVENNTEDVCVAFFNTPHTESKSILEEFLLQLTEIIAFVDADQITYYTQMEAITTILVLLSSQMFDLKSTSKSKIFQMIMRSKCSNNASETVRKLLHNYIRNEPAPVSSS------------LVGWAT---SGIWSMFXXXXXXXXXXXXXXNIQPNSPNEXXXXXXXXXXXXXXXCFHYTKDGNPYREALFRCKPGRKSEGPEAAVGRSFPLNFKRLYSSLTRDLKHDQTVLLLYLLLHKNESFHNFALRQKDLQSVVIPILQVLYHAEQRNAHHIYMALIVILIFTQNEEFNIAVHEMPVIDAEWFAEKKXXXXXXXXXXXXXXXXXXQYNMAKMRDKYLHTNCLASLANMSNSFKNLHSIAIQKFVTLFQSLIKRRAKLIEK-TKDIDTTIEHESNELADLA----VLEEILHMMIEILNACLTNNIKDNSTIVFAMLRHKELFQDFKSNPKFQDVVHNIDSILSYFGSRVDEKMDSVNTAEGFISIIEEAAGTWPKDDIKKNAHLKFKYMEEEAAEEFFVPYIWSIIYKSSF-LYWNSDKILLF 2071
MGS+ S I DLP+NE+L KL I +D FW+QLLSF F P S +L+ E T +C S+ NN T N L+ V + +E+ + E ++ + NAL II CC E + E+ +++ + L L+QL I +D ITY +EAI+T++V LS Q+F + +S + +MR C S+ V+ LL+N+IR E P + L G A+ +G+W++FT G G S P + L L + L + NPYR+A+ K + S +++ +F +NF LY++L DQ LLLY LLH+N + + L + D++++V+PIL++LYH E+RN+HH+YMALI++LI T+++ FN ++HE+ + + W++E+ LT ISLGSLLI++++RTIQYNM + RDKYLHTNCLA+LANMS F++LH A Q+ ++LF L K+ K++E+ T+ + ++ L D A V+EE++ MM+EI+N+CLTN++ N +V+A+L ++LF+ F+++P FQD++ NID ++S+F SR+ + + + E + II++ PKD +KK LKFKY+EEE EEFF+PY+WS++Y S+ LYWN I LF
Sbjct: 1 MGSNSSRIGDLPKNEYLKKLSGTESISENDPFWNQLLSFSFPAPTSSSELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAEC--QNHIFIWQTHNALFII--CCLLKVFICQMSEEELQLHFTYEEKSPGNYSSDSEDLLEELLCCLMQLITDIPLLD---ITYEISVEAISTMVVFLSCQLFHKEVLRQSISHKYLMRGPCLPYTSKLVKTLLYNFIRQEKPPPPGAHVFPQQSDGGGLLYGLASGVATGLWTVFTLGGVGSKAAASPELSSPLANQSLLLLLVLANLTDA------SDAPNPYRQAIMSFKNTQDSSPFPSSIPHAFQINFNSLYTALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVISFFSSRLLQAGAEL-SVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNSAVGLYWNPQDIQLF 664 The following BLAST results are available for this feature:
BLAST of TCONS_00071144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.