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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071141 ID=TCONS_00071141|Name=TCONS_00071141|organism=Clytia hemisphaerica|type=transcript|length=2179bpRun BLAST on NCBI protein sequence of TCONS_00071141-protein >TCONS_00071141-protein ID=TCONS_00071141-protein|Name=TCONS_00071141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=726bp ELSLKQEKLVDESTKRRRALEHEITQTLTTQLELDKVSEAFREAHQARQERun BLAST on NCBI transcript from alignment at scaffold_6:46790..56179+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071141 ID=TCONS_00071141|Name=TCONS_00071141|organism=Clytia hemisphaerica|type=transcript|length=9390bp|location=Sequence derived from alignment at scaffold_6:46790..56179+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_6:46790..56179+ >TCONS_00071141 ID=TCONS_00071141|Name=TCONS_00071141|organism=Clytia hemisphaerica|type=CDS|length=28314bp|location=Sequence derived from alignment at scaffold_6:46790..56179+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071141 vs. Swiss-Prot (Human)
Match: CCD39 (Coiled-coil domain-containing protein 39 OS=Homo sapiens GN=CCDC39 PE=2 SV=3) HSP 1 Score: 460.685 bits (1184), Expect = 2.230e-148 Identity = 304/694 (43.80%), Postives = 457/694 (65.85%), Query Frame = 1
Query: 4 LSLKQEKLVDESTKRRRAXXXXXXXXXXXXXXXDKVSEAFREAHQARQELLEQWENTIKQMQRRDNEIDEASLRLMELRVNVKTKQEDMKDRQQFXXXXXXXXXXXXXXISMAERNAAKLRLEYQNIENSRQQFQDELETLKYKVDRTAKDLESTRKKAHELKNEVAIRQDKLSRAVDVKEELIEQLTLAEDSKMTAEERSDRLEAALKKEQQRIVDVEKELAKLREMQFKKTQDLYQVRQMETNTNAEIHGAKAASRNLSSKLYKLDQESLKQQEIVYNQDFQLQQAERKLIRLQGDRTNEEKNQLNEKIKQLTGILEGHQNKQTMLTAQLKKLGDDLRRANRDLSKGEDETKNLTNKIGELTLHNDSSERELRNIKNKKEDLMVDENLLKLEIKRLRDQLFNRATEVLSLEDRRLLLETAMKERRQEIYIHTDMLKAQVKTSEDERQKISAELHERISKIEKLRKRYEILMVSMAPPEGEEEKTQAYYVIKAAQEKEELQRTGDQLDAKIRKAEKEIRALKNTVKLMNDRNSTYRKSFNNVEETSEEYEKKMQLEEQLRAAMDKLKYKKRQMKELQEDLRVMQATAESLTVDENELVVTMEEKQRTIDSLQKELDVQEEKKERADKMTRKVIRDVXXXXXXXXXXXXXFEEGEADIKVRELRDFNNSLMKKLGLICRDYPDIAPVLTMYCQQ 2085
L+L+ E+L E ++R+ L++E+T+T++ QLELDK ++ FR+ H RQEL++QWENTI+QMQ+RD +ID +L L ++ + K+ +K++ +FL+ E+ NN E EK+IS+A+R K R YQ+ E SR Q + EL++LK V+RT+ DLE+ RK ++K ++ +L + + E + +L + M+ EE++ LE LK+E++ + +V+ +L ++ + FKK Q+L E +EI G +++ ++L+ +L KLD E+LKQQEI+Y+QDF +QQ ER++ RL+G+ +EEK L KI +L LE ++ +L Q+KKL +DL + SK DE ++L KI EL L D SE+EL K K+DLM+++NLLKLE+KR R+ L ++A EVLSLE R+ L TAM+ER +EI +H ML +Q++ + ER+ IS E ER+SKIEKL+ RYEIL V M PPEGEEEKTQAYYVIKAAQEKEELQR GD LDAKI KAEKEI AL+NT++++N N+ Y++SF V +S+EYE K+QLEEQ RA +K +YK+RQ++ELQED++ M+ T + + N + + EKQ L KE + Q+ K ER K K+ ++++ ++ + E DIK+RE++ F+ + + L I + +I +L Y QQ
Sbjct: 174 LTLQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEINSEEKQALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIRYVDQERENISTEFRERLSKIEKLKNRYEILTVVMLPPEGEEEKTQAYYVIKAAQEKEELQREGDCLDAKINKAEKEIYALENTLQVLNSCNNNYKQSFKKVTPSSDEYELKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEKQAYSFQLSKETEEQKPKLERVTKQCAKLTKEIRLLKDTKDETME-----EQDIKLREMKQFHKVIDEMLVDIIEENTEIRIILQTYFQQ 862 The following BLAST results are available for this feature:
BLAST of TCONS_00071141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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