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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071140 ID=TCONS_00071140|Name=TCONS_00071140|organism=Clytia hemisphaerica|type=transcript|length=578bp
ATCAAATCTTAGTATAAATATCGACTAACTGTTGTTACTGAATCAGAGTA
AAAATGAAGTACCACATTATAGTGTTATCGTGTTTGCTATGGATAAAATT
AACAGaatgttttcaatggGACAATTCAGTTAGTGATTCATCCGTTTATG
CTAACAACTCAGGCTCCGCAATTATCAAGTTCAGATATAGCTATGGAGCT
GAAGACCGTTCAAGTGTTTATATTACATGTGGAATATGGAATACAAATCA
ATCCAAAATCATTCCCATGGTGAATAAAATGGGTAACCAACCTGCACAAA
GAAGAAGTGGAGTTACTGGCGATGTTTTAGGGAATAATGCAGCTCTCTAT
ACAGAATCTACACAACCAACTGTTATTGGATTAAGATTGAGTAATATTGC
AAAGACCTTCCCAACTCAGTACCGTTGCGATGCATCTTTTACTAAAGCTG
ATGGTGTGGCTGATAGTGAAGCAAGTGATCGTGTCAATCTTATTGTCTTA
GaaCGTCCAAAATTTACAAACTGTTTGCAAAACATACAATCCAAAGAAAC
TGTGGCTGGCAACTCACTTGATATAACA Run BLAST on NCBI protein sequence of TCONS_00071140-protein >TCONS_00071140-protein ID=TCONS_00071140-protein|Name=TCONS_00071140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MKYHIIVLSCLLWIKLTECFQWDNSVSDSSVYANNSGSAIIKFRYSYGAE
DRSSVYITCGIWNTNQSKIIPMVNKMGNQPAQRRSGVTGDVLGNNAALYT
ESTQPTVIGLRLSNIAKTFPTQYRCDASFTKADGVADSEASDRVNLIVLE
RPKFTNCLQNIQSKETVAGNSLDIT Run BLAST on NCBI transcript from alignment at scaffold_6:40743..44409+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071140 ID=TCONS_00071140|Name=TCONS_00071140|organism=Clytia hemisphaerica|type=transcript|length=3667bp|location=Sequence derived from alignment at scaffold_6:40743..44409+ (Clytia hemisphaerica)
ATCAAATCTTAGTATAAATATCGACTAACTGTTGTTACTGAATCAGAGTA
AAAATGAAGTACCACATTATAGTGTTATCGTGTTTNtcatacccgtcacc
tcgtaaACCCAGTACCCCCCCCCTTCCTAATCAAGGAGGGGACTGTATGC
GCCACAATTGTACCAAAAAATAGGTGTTCTAGTAGGTGAATGTAAATAAA
TTTGTTAATTTCTAAATAGTTCATAATGAATTTTACATATTGAATGATTA
TATGATTATACTAATATTATATTTCCTCGAAAAGATTGAAAAGGATAAGT
TATTCCACtagtaaaataatttaaatattTGATACCGTTTTACGTCAATA
AACTTAGTACTTATCAGTTGAGCAATTAGCTTTCAGAAGCTTTTTTAATT
ATCTTCAATCAACGATGTCATCAAAATCAAAAATGAAACTTGATTATTCG
TTCAAAAATGACGTCACCAAAAAGTTAATTGTCAAGATCATCTCGAAAAT
CATATCAAATCTTTGTATAAATATCGACTAACTGTTGTTACTGAATCAGA
GTAAAAATGAAGTACCACATTATAGTGTTATCGTGTTTGCTATGGATAAA
ATTAACAGGTAATTACAATTTTTTTGTACAGTAGAGTCTCGAACCTTTAT
AACTCGagtgtctccttaactcgaataagtTCCCTCGTCCCTTACCGTCG
TTtcgtataagattcccatttcctcATTAagattttcgtcacttttccgg
GATAACTAGCACGAGATCAGAAAGGGTTTGCTTCTAAAAGTACGGAAGGT
GTTGTAGTACTCACGAAATtgcctaactttccgaagcttaATTTTCAACC
ACCCAAAGTtctggtctttttccgctagaaaagtggAAAAGGAATCTTAg
tacggaaatgggaatcttatacaaaacaacggtatTTATACCGTATATTA
TAAAGTAAGGTTTATACTCCGTAACTAGAATTTtcctaactcgaacaaat
ttgtgttcccctggcgacttcgagttatggagactcgacTGCATTATATA
TTTTCTAAGTGCTATGGAATAATAGTTTTTTTAGTCTTCACTATCATAAA
TACTTGGAAGTATTCTTAACTTTAATTGAGCCTGactctgagaatgtctg
tctttatgtttcaaaacctttaaaaggCAGAAACTTTGGAAATCGTCAGA
TTCGGATGAAATTTAATTAAGCTTGCTCCTTGTGtgccttttttcatttt
ttcaaaaatttttatctttaagGCCTAGAACGATCTTTTCACTATACCTT
CGATTTAGCCCCCGTTTGTCTGtgtacaaaataatttttttttttaactt
tcagaatgttttcaatggGACAATTCAGTTAGTGATTCATCCGTTTATGC
TAACAACTCAGGCTCCGCAATTATCAAGTTCAGATATAGCTATGGAGCTG
AAGACCGTTCAAGTGTTTATATTACATGTGGAATATGGAATACAAATCAA
TCCAAAATCATTCCCATGGTGAATAAAATGGGTAACCAACCTGCACAAAG
AAGAAGTGGAGTTACTGGCGATGTTTTAGGGAATAATGCAGCTCTCTATA
CAGAATCTACACAACCAACTGTTATTGGATTAAGATTGAGTAATATTGCA
AAGACCTTCCCAACTCAGTACCGTTGCGATGCATCTTTTACTAAAGCTGA
TGGTGTGGCTGATAGTGAAGCAAGTGATCGTGTCAATCTTATTGTCTTAG
GTAAATGAAACCCTTCACTTTAttgtgtttgaaatttttaatcaaaCATA
ATTGATGACATTATCAGAATCAAATACACTCAATTCAACCAAGCTTTCAG
CAAATGCGTCTCAAGGAATACTATTGATTGAAGTATTGTATATAGCGTTG
TCCATAGCTAGATGTtgagatatttgactttgaaaacTCGCTCATGTATT
TGGATGCTTCTGGCCCTTCTCTGATTTTTTCTTAGGGATAAAGCTGACAA
AATTTATTAGCCACCCCGTTATGAAGATTTACTCCATCAGGTGGTAAATT
AAGTCTAAGAACTTCAAACTTTCTAACAGTCTCTAAGCTACAAACCCTTC
AAAGCTCTCCATAGAAAATTTTTGCAGGCTTGTTAGCTCAGCATTGAAGC
AATTGAAGcaacatttttagatttcattAATCCATCtgtaatattttatg
ttttcagATCGTCCAAAATTTGTAGNAATATATCaaacagccttaagtcc
taaattttaggccaaattttattttctatgaagcattgacatggaatgtg
tagccttaagtccaacacatctcaacctttaaagtcaattatctaaaaat
gggaaaaatggacttaaggctgttttgaattgacacggcgatatGGTCTT
TCCTCAATAGGATATACAGTAACAGTGTTAGTaaaagtacacattttttt
cttaagaaaaattattgaagcctTCGGGTATTCTTAGCTTTTTAAGTTCT
caaaatgttattattttcaccattttgtgagaatttttgttcaatttcat
aaaaatttggtACTTTAGAGTTTAAgacttgaaatgttcttaatttgtac
TTAATATTTTGCTTAGCGAAGCCATATGTTCTTATCAAATCTATTCtgat
aaaaaagcgtgtattgatAAATACGATGTTAttgtccgttacagtgatag
taaaggcgggaaaatacgGCGGTATGTGGAAAAAAAATCGGTGGGCGAGT
TTtgaagactggcaactctaccgactttAAACTCTTTTCCGCAAAAAAct
cgtttgcgaattttcttcgctTTTGGGTGgccttttttcttagatagtga
ttcgtcttagactatagcatagtctagtaTTGATAGTGAGACTTGCCAAC
TGAAAAGGAAAGATACATTTTAATTTTGACTGTCATGTTTAGCAATTTTG
ACTCAATGGGTAAAAGCCATGACATAAAGCAAGAAATTACTTTCAAAAAA
GTGCTTTGAAAGTTCAAAAGTTGAACTACTCAAAAGCTATTGTACTGTAA
TTATAGGAAGGCGAATTTTTTACTTTCGACCAATATTCAATTAATTTGTC
TGTTGAACCATGACAATTGATTTTTGTCAActtcaaacaaaattgaaaaa
tcaaaatgtgggcttaaaattttttaaagatactcCAACGATAAATTGAA
TGCTTTAAGGCTGGGGAACCagaagtttttttcaacaatgcaacatgctt
ccatcccaccaacctgaaacgctttctcgtgtctccatcccatttttcat
ttaataacatttgtgcttctctcacttttatcccagggacaaaatcagcg
tgtcttttgggtatttccctcactttttgtcccatgaaataaaaaaagaa
accatgagacacgcaccttttttcttgtgttggtgggatgaagcatgttg
cattgcaccaacgcaaaaaaaagGTGCGTGTCCACAAGCCTTTACTATAC
CCTTATACTATGCTATACCTCATGTTTTGGATTTTTGGTCATCGATTTTT
TGATTCGTAATAACTCacctttattattttatattttcagaaCGTCCAAA
ATTTACAAACTGTTTGCAAAACATACAATCCAAAGAAACTGTGGCTGGCA
ACTCACTTGATATAACA Coding sequence (CDS) from alignment at scaffold_6:40743..44409+ >TCONS_00071140 ID=TCONS_00071140|Name=TCONS_00071140|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at scaffold_6:40743..44409+ (Clytia hemisphaerica)
ATGAAGTACCACATTATAGTGTTATCGTGTTTGCTATGGATAAAATTAAC
AGaatgttttcaatggGACAATTCAGTTAGTGATTCATCCGTTTATGCTA
ACAACTCAGGCTCCGCAATTATCAAGTTCAGATATAGCTATGGAGCTGAA
GACCGTTCAAGTGTTTATATTACATGTGGAATATGGAATACAAATCAATC
CAAAATCATTCCCATGGTGAATAAAATGGGTAACCAACCTGCACAAAGAA
GAAGTGGAGTTACTGGCGATGTTTTAGGGAATAATGCAGCTCTCTATACA
GAATCTACACAACCAACTGTTATTGGATTAAGATTGAGTAATATTGCAAA
GACCTTCCCAACTCAGTACCGTTGCGATGCATCTTTTACTAAAGCTGATG
GTGTGGCTGATAGTGAAGCAAGTGATCGTGTCAATCTTATTGTCTTAGaa
CGTCCAAAATTTACAAACTGTTTGCAAAACATACAATCCAAAGAAACTGT
GGCTGGCAACTCACTTGATATAACAATGAAGTACCACATTATAGTGTTAT
CGTGTTTGCTATGGATAAAATTAACAGaatgttttcaatggGACAATTCA
GTTAGTGATTCATCCGTTTATGCTAACAACTCAGGCTCCGCAATTATCAA
GTTCAGATATAGCTATGGAGCTGAAGACCGTTCAAGTGTTTATATTACAT
GTGGAATATGGAATACAAATCAATCCAAAATCATTCCCATGGTGAATAAA
ATGGGTAACCAACCTGCACAAAGAAGAAGTGGAGTTACTGGCGATGTTTT
AGGGAATAATGCAGCTCTCTATACAGAATCTACACAACCAACTGTTATTG
GATTAAGATTGAGTAATATTGCAAAGACCTTCCCAACTCAGTACCGTTGC
GATGCATCTTTTACTAAAGCTGATGGTGTGGCTGATAGTGAAGCAAGTGA
TCGTGTCAATCTTATTGTCTTAGaaCGTCCAAAATTTACAAACTGTTTGC
AAAACATACAATCCAAAGAAACTGTGGCTGGCAACTCACTTGATATAACA
ATGAAGTACCACATTATAGTGTTATCGTGTTTGCTATGGATAAAATTAAC
AGaatgttttcaatggGACAATTCAGTTAGTGATTCATCCGTTTATGCTA
ACAACTCAGGCTCCGCAATTATCAAGTTCAGATATAGCTATGGAGCTGAA
GACCGTTCAAGTGTTTATATTACATGTGGAATATGGAATACAAATCAATC
CAAAATCATTCCCATGGTGAATAAAATGGGTAACCAACCTGCACAAAGAA
GAAGTGGAGTTACTGGCGATGTTTTAGGGAATAATGCAGCTCTCTATACA
GAATCTACACAACCAACTGTTATTGGATTAAGATTGAGTAATATTGCAAA
GACCTTCCCAACTCAGTACCGTTGCGATGCATCTTTTACTAAAGCTGATG
GTGTGGCTGATAGTGAAGCAAGTGATCGTGTCAATCTTATTGTCTTAGaa
CGTCCAAAATTTACAAACTGTTTGCAAAACATACAATCCAAAGAAACTGT
GGCTGGCAACTCACTTGATATAACAATGAAGTACCACATTATAGTGTTAT
CGTGTTTGCTATGGATAAAATTAACAGaatgttttcaatggGACAATTCA
GTTAGTGATTCATCCGTTTATGCTAACAACTCAGGCTCCGCAATTATCAA
GTTCAGATATAGCTATGGAGCTGAAGACCGTTCAAGTGTTTATATTACAT
GTGGAATATGGAATACAAATCAATCCAAAATCATTCCCATGGTGAATAAA
ATGGGTAACCAACCTGCACAAAGAAGAAGTGGAGTTACTGGCGATGTTTT
AGGGAATAATGCAGCTCTCTATACAGAATCTACACAACCAACTGTTATTG
GATTAAGATTGAGTAATATTGCAAAGACCTTCCCAACTCAGTACCGTTGC
GATGCATCTTTTACTAAAGCTGATGGTGTGGCTGATAGTGAAGCAAGTGA
TCGTGTCAATCTTATTGTCTTAGaaCGTCCAAAATTTACAAACTGTTTGC
AAAACATACAATCCAAAGAAACTGTGGCTGGCAACTCACTTGATATAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071140-exon-scaffold_6-1491911889:40743..40807 | TCONS_00071140-exon-scaffold_6-1491911889:40743..40807 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1510915933:40743..40807 | TCONS_00071140-exon-scaffold_6-1510915933:40743..40807 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1575043694:40743..40807 | TCONS_00071140-exon-scaffold_6-1575043694:40743..40807 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1491911889:41311..41350 | TCONS_00071140-exon-scaffold_6-1491911889:41311..41350 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1510915933:41311..41350 | TCONS_00071140-exon-scaffold_6-1510915933:41311..41350 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1575043694:41311..41350 | TCONS_00071140-exon-scaffold_6-1575043694:41311..41350 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1491911889:42097..42492 | TCONS_00071140-exon-scaffold_6-1491911889:42097..42492 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1510915933:42097..42492 | TCONS_00071140-exon-scaffold_6-1510915933:42097..42492 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1575043694:42097..42492 | TCONS_00071140-exon-scaffold_6-1575043694:42097..42492 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1491911889:44333..44409 | TCONS_00071140-exon-scaffold_6-1491911889:44333..44409 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1510915933:44333..44409 | TCONS_00071140-exon-scaffold_6-1510915933:44333..44409 | Clytia hemisphaerica | exon |
| TCONS_00071140-exon-scaffold_6-1575043694:44333..44409 | TCONS_00071140-exon-scaffold_6-1575043694:44333..44409 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:40743..44409 + |
Blast
The following BLAST results are available for this feature:
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