TCONS_00071138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071138
Unique NameTCONS_00071138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071138 ID=TCONS_00071138|Name=TCONS_00071138|organism=Clytia hemisphaerica|type=transcript|length=2341bp
ATGAGCAAACGCGGGACTCGGCCCAGGACTTTTTACCCGCGTTTTAAACG
CGTTTACGGCAATGTTTATTCTttacactttcattttcaaaatctgttgA
ACATGGATTTTGGCTTGTGACGATTACCTCGCATAACATCTGTGAGCCCA
TGATGCGTTTGCCACTAGTTTTATCGACTATCGTTTAATTATTCAAAACT
GGTTAGTGACAAACGCCACCACTGAAGCATTTTTTTGGATTCTGAAGTAC
CAGAAGTATTTTGTGCAGAAAAAAGAAGTTCTGCAGTACTAAAATATAAA
GTGAAATGTCCCCCACTTTCAAATGTACCGCTAGTAGCTTTAATAtgagc
aaaaaagaaaaagtggtTGAANGGAtatttagatacatagatacatagat
acatggatgcgtagatatgtagatacatagatacatagatacatagatac
atggatgcgtagatatgtagatagatagatacatagatatgtggatatgt
agatacatagatacatggatgcgtagatatgtagatatatagatacgtag
atacgtagatatatagatacatggatatgtagatatatagatacatagat
acatagatacatggatgcgtagatatgtagatacataaNAGATTGAAAAG
TTAGAATAATTATGTTTGGTCTTCGATGAGTCTTGTGGAAaagggacttt
aaatttcatgtgCTTCCCTTTAAACTTGATGACTTCTAGTGTCAATCAAA
CAACAATAATGCAAACACAATATTGATTCTTTGNTTGATGTCTTCTAGTG
TCAATCAAACAACAATAATGCAAACACAATATTGATTTTTTAACAACAAA
AGCCTGGGGTTTTCAGTTGAAGCAAAACAATTGCTGGCCTCTCTCTTAAA
AACAATACAACATTTTTCCAACAATGATTTTATTATTCCCTAGTCAGTGG
atttcaaatttcatatttctagAATTTTCTCCACACTTGGCTGTAAAGTT
CAGATGGAAAACAGGGGGTAAAGAACAGACTTTGAAATCTTGTTTTGGTG
GATGAATACTTGTATGATTCTGGAAAAATGGCAGGGGAAAAAGTATCTAT
GTTACAGAatgaaaaaaCTTACAAAAAGAGCTTGACGTTCAAGAAGAGAA
AAAAGAGCGAGCGGACAAAATGACACGAAAAGTAATCCGTGATGTTAAGG
GAAGCAGTACTGCATcaaagaaatctaaaaaaggATTCGAAGAAGGAGAG
GCTGACATCAAAGTACGAGAGCTACGAGATTTTAATAACAGTTTAATGAA
GAAATTGGGTCTCATTTGTCGAGATTATCCAGACATTGCCCCCGTTTTAA
CAATGTATTGTCAACAATCAGGACTTCCGGTTCCTCCATCACCCGGACCA
GGTAGTTCCCGTGGCTCATCGACTACTGGAAGTGTTCGATCGAATTTGAG
TTCAGCTAGatcATCAGTATCGTCCGTTCGAAGTGATACAAGCAGTGCAC
GACAAAGTCGACAAGCCTTGGGTACTGTGTCTGTTGACCTGTCTTTCAAT
GCTTTCGCATCACACAGTCCGCTAGGAACACCGCCACGATCAACCGCCAG
TTCTCGGGCGTCATCTGGCAAATCAACACCCTCTCGTACTCCTTCACGAA
GCACTTCCGCCTCATCGAATCGTACCTCCCCAACCAAGAAAACGCCCACG
TCTAAATCCAATTCACGCCCTCCAACAGGGCAATCATCTGCTTCATCAAG
CAAAAGATAGATAGAAACCCGTTTGGTTTTTTTGTAGATGGTGAAGTGTT
AGTTAATACCCTCAAAAGACACACTTTTGGTCACAAATgggtcaagttga
acatttacaagaatttttgtcattggattggtcgttaactattcaaagaa
aaacttttattatagttttctaaagaacgcgtcatctctattgttttgaa
tagccaattatgtgagcatcttgtaaaaacttcaatacAACTGCACAAAT
GCGGGTTGTTCTAAATTTTTAAGGATAGAGGAGTTCTAAGCCCACTAATT
CAGGGAGGCCAGGGGGTACTTAAGTAAACTGGGTGCCGGTTATGTGTGAG
CTTTTAGGTTCCCTTtttacaccctcgaaagtccctcAAATGGGTACAAA
gaccattaaaaagcaattgagtctctgtaagggttccaaaattacgaaaa
taaaaaatcgtaaattcataaattcttgaaattcggactaaaatttgaaa
attttggctgaaattttgactgaaatagtctttctaagggtggcaaaaac
gtcaaaaatggacaacattttcgaaattcagtctctctaag
Run BLAST on NCBI

protein sequence of TCONS_00071138-protein

>TCONS_00071138-protein ID=TCONS_00071138-protein|Name=TCONS_00071138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MTRKVIRDVKGSSTASKKSKKGFEEGEADIKVRELRDFNNSLMKKLGLIC
RDYPDIAPVLTMYCQQSGLPVPPSPGPGSSRGSSTTGSVRSNLSSARSSV
SSVRSDTSSARQSRQALGTVSVDLSFNAFASHSPLGTPPRSTASSRASSG
KSTPSRTPSRSTSASSNRTSPTKKTPTSKSNSRPPTGQSSASSSKR
Run BLAST on NCBI

transcript from alignment at scaffold_6:21468..39861+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071138 ID=TCONS_00071138|Name=TCONS_00071138|organism=Clytia hemisphaerica|type=transcript|length=18394bp|location=Sequence derived from alignment at scaffold_6:21468..39861+ (Clytia hemisphaerica)
ATGAGCAAACGCGGGACTCGGCCCAGGACTTTTTACCCGCGTTTTAAACG
CGTTTACGGCAATGTTTATTCTttacactttcattttcaaaatctgttgA
ACATGGATTTTGGCTTGTGACGATTACCTCGCATAACATCTGTGAGCCCA
TGATGCGTTTGCCACTAGTTTTATCGACTATCGTTTAATTATTCAAAACT
GGTTAGTGACAAACGCCACCACTGAAGCATTTTTTTGGATTCTGAAGTAC
CAGAAGTATTTTGTGCAGAAAAAAGAAGTTCTGCAGTACTAAAATATAAA
GTGAAATGTCCCCCACTTTCAAATGTACCGCTAGTAGCTTTAATAtgagc
aaaaaagaaaaagtggtTGAANGGAtatttagatacatagatacatagat
acatggatgcgtagatatgtagatacatagatacatagatacatagatac
atggatgcgtagatatgtagatagatagatacatagatatgtggatatgt
agatacatagatacatggatgcgtagatatgtagatatatagatacgtag
atacgtagatatatagatacatggatatgtagatatatagatacatagat
acatagatacatggatgcgtagatatgtagatacataaNAGATTGAAAAG
TTAGAATAATTATGTTTGGTCTTCGATGAGTCTTGTGGAAaagggacttt
aaatttcatgtgCTTCCCTTTAAACTTGATGACTTCTAGTGTCAATCAAA
CAACAATAATGCAAACACAATATTGATTCTTTGNTTGATGTCTTCTAGTG
TCAATCAAACAACAATAATGCAAACACAATATTGATTTTTTAACAACAAA
AGCCTGGGGTTTTCAGTTGAAGCAAAACAATTGCTGGCCTCTCTCTTAAA
AACAATACAACATTTTTCCAACAATGATTTTATTATTCCCTAGTCAGTGG
atttcaaatttcatatttctagAATTTTCTCCACACTTGGCTGTAAAGTT
CAGATGGAAAACAGGGGGTAAAGAACAGACTTTGAAATCTTGTTTTGGTG
GATGAATACTTGTATGATTCTGGAAAAATGGCAGGGGAAAAAGTATCTAT
GTTACAGAatgaaaaaagtaaagtaaacTTAGCTTTTTCAGGTAAAGAAG
AATCGTAGAATCgttctttttctttgaatctTCTTTCCCAAATCTCTCCA
AATCTCGAACAGTCTCGAATTCTTCTTTTGTGACCAACATCATTTCCAAT
GTTTCCATTCACTTTTTAGCGCGCTTTATTCAATTTAGCCTCTGTAATTT
ACctttaagttaaaaaaaatgCGCGAGGCtaacaaatgtaaacaaacatg
gtAGCCACTCACTGCGCTGTTGTTGCATGGAAAGAGTTACATCGGATCAC
CCAAAGTAccctcatgttttttttttattttcttatctctgatcctgtct
ctctcttttctgactgtctgagtttNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCccggaaaggtgactatca
gcgatccgtggataaaaaaataaaaaaatgaaaaataaaaaaatgaaggt
aactttgggtgatccgatATAACTCTCTCCTTGTTGCATGTTGGTCTGTT
GGGGAATGGTGGTACAGAGACTGTGGCACACGAAGCATATCACATGTTAA
TAATTGCAATGAGTTGCTGTATGGAGTCATCATCAAAGCGAAAGCCCTAC
ATAATACTAAATTGTGGTCAAACTTATCAAAGTCAGACATGGGGAAGATA
GAGAAAGCACACCACATGAGAGCGTCATATAATTTGAAGAAGTTCAAAAG
CTCATGCTTTATTACCAAAATCTTTAGACCTTAGCACTCCAACCAATAAC
AAAAGAATAGTGAAAAAGGTTCTCAATGAACAAATCTGGACATTGCGGTT
TGTATGATGTAGTGATGAAGTCGAGGAGAGTAGAGTTCAACCCCGACACC
ACCAGCTTTTATAATACACAAAACGATACTCCGAGCGATGATTTTTTTGA
GACAATAACAAAAACCTGGTGATGGAAAAAAGAGGTGAAAAGTGCAACCA
ACGTAAAGACACTAACTCAATTAAAGGAACCAAAGCAAGATGTTTAAACA
TACTATTATTAAAAATACATAATGATAGAACTGCTGACGAAAAATGCACA
AAGTCATCGACACAACTGATGCTGTGACCTCTCTGTGATGCTCGGCTCTG
GCTGGCACTACAAAATATGACTGAAATCAGAGACAATTTTGAACAATGTA
TTAcgttcaaaattcttttttgcgaAACATAGAGAAAGACACCACTCAAC
ACGTATCAGATAGAATATCaaatataaatacaaaagaaataataaCTATG
ACTTAACCTTGGATCTAAGAAATCACTTGAGGGAAAAGGTTTATAATACA
ACTAAGaaattcattttaaaaaacattattttgaaattattactaTTAGG
AATAGCAAGGAGgaggaatagaccttttttcaaagaggccaccctgctga
ataattatgtagtccagcagaaaaacaatgataaaaccatgcataattat
tacaatatgcatgataCAGTAATTATGCATGGCTCAATCATTGTTTTTAT
GGCTGGACTACATAATTATTCAACAGGACGACGATGAGCTCATTTTTTTA
ATTTACCTTGTTCTCTATAGTCCTTTTTGGAATAATTGATGTCATAAATT
GTATGCAACCTCCATTTCTATACTAGTGAGGGATAGGAAATATAATTTTG
CCGTTGTTTACATTTATCTACTTATATACCAGTAACAATAGATAACACAA
TTAGAATGTACGCTTTCTAGCATTAAGCATTTTTCCAATCCGTTATATAg
gtgaaattgaattgttaattGTGCAATCAGATGGAAgaatttacactttt
ttttagtCATTTAAGGCTATCTTCTTTTGTATTAAGCCATTTCCATGCAA
ATAAACCAGTCATTAACATCTTATTTCTTCTTAAAAGTTGCttagatttt
gcatacttttttaaAAGGAATTTCACCACTGCAAATTTGTGCTCCACATT
TTTGCATACAAAAGCAGATAGTTGCTGCAATtccaaaaaggtctattcat
cACTTATATGGCGAATGGAGatttaattttgacaaattaGTTAATGAGTG
TAAATCTGCTCTATTTTGCcctttttcaagcaattttcatGAATTTCATT
TGTTAGTTaggcaaaatatcaaaaaatctaattttgaaCCAAAGTTATTT
TGGTGAGTAAGGAAAACATTTAATTTAGTTTTGAAGAGAACTAATCTTGT
TAAATCTTGTCTAAATTCCCTAAATTCCCAAAAAATTTCAACACACAACA
AAAATTGTAATCTTTCTAGAGCAGAAAcagcaaaaatctttgaaaaatgt
gaTGTTGTTAGGCCTTTCTAAGCATGACAGTTGTTTTGTTGATGGCGTTC
AATGCAAATTGCTTCtgattgatttttgtttttagaaagtgACTGATGAA
CAAGGAGGAATTATTTTTTGGGTCAGTCGGGTGATAATGCCCTACAAAGA
TTTTTGTGATTGCCCCTTAAAACCTCAGAGACGTAGAGCTGCCTAAAATT
TCTGCCTgttaaaaaattgtaaatatatacagatattttaaattttatac
tGTTAATATATTTTACGGACAggaatttgtaaattttgcccACTGTGATA
GGAGAGATTCAACTGGAATGAATAAACAAATAATAGAATGAATGACATAT
TGTTAGTTTAGTGATATGGTAATTTTGGTAATAATGTGAAATCAAGACAA
GTGAAGTCATCCAAGTTAACTTTAGATAATTCAAATTACATAAAAGTATC
TACCTAGGACGATATTTGTGcaagattttctgaaaaataaaaaaacattt
gcttgacgatttttaaacaatagcCCCTTCAGTATACATTCATGCTACAT
TAATTTGTGTATCCTGTTTTACTTGTTCAATTTGAATAATGTTATATTAC
CGTTCTCTTTAAATagaaaaatggatttatttttttgtattcatTGCAAA
AGAAAATATTCCAAATCAGTATTTTACCGATCTCACAATAATCGGAAATG
TCAAACAAAGAAGATGGTTTTGGATCCTCCAAATATTCTCATAGAAGATG
GGAATAATAATTATGATGATCCCAATGATGCAGAAGAGAATGAGTATAAT
CATGATGACAATGTCTCAGGTATACGAAAGCAATTCAGTAGGGTGTTTGA
AAGACAATATTTTTAGTCAAGCTGTATTCGTTTGTTTAATATTTACATTA
TGGGAATATATAATCTTGACATTAAGGGATCAGATAGTTTTTTTATATTC
GACCTAAAGATGTCTCCGATGATGGTCCTGAGAAAAACCTTCAAATTTTT
TGAcccaattatttttcaaagctaAGATATTTGATTTTATAATGTGTAAA
ATTTAGTCTTCACACGCCTTTACGATAAATTtatattgttttcaagcaaa
aatatcaatttttgaagGTCTTTCTCAGAGCTATGGGAGATATTTGTCag
tgaaatataaaaaactacCTGATTATCTCCCTTTAACTATCGCATCtaga
aaatttaatcaaatcaacactgtatttcaacaattttcatttgttaaagA
TAATGAACAAGATGCACCAGAAGACAGTGGAAATGATCAAAACTCTGACG
AAAATGATGTGGAAGACGATTTTCCTCAAGATCAACCTGAAGATGTAAAC
TGtcttttataactttttgaacACAGCCTTGCTTGCTTTTTAGGTTTTGA
AAACtttctaattcaaattcaataacAATATTTGGAATAGCAATTTCTGA
ATACTAAGGCAAACAACCAATTGTGTCATTTGCCAAGACATATCTTTGTT
AAACAATCTGGACATTATGCTCATTCGCctgttgtatttttttttctgaa
cttgTTTATTACCAAACAATTgaaatttactttaatttttaagGTTATAA
CGGAGGTGTGGGACGAAGAAGAAATTCCTGATTTTTTTGAGGAGGAAATA
GAAGAAGAATACAGTGAAAGCTTCCGAAAAGTATCAAGTGCACTTAAAGA
ATTACTGAAATGGCAATTGAAGTATTCTGTTTCTGATGGATGCCTTAATG
CCCTCTTAAAGGTGATAAAAGTTTTCTTGGCAGCACTCAACGTAGTTATC
AACTCTAACTTCCTTACCGAAGTATTGGAGCTTTTACCAGAGACTCTTCA
CAGCCTTAGAAAAGTTACTGGAATCAACAGGGATGATTTTGACCAATATA
TTGTTTGCCCTGAATGCAACTCACTTTATAAGAAGGAAGATGTACTTGTT
ATTGGTTCAGGTAAGCACTCTTTTTtgttatcatataacacccatgTTTC
TTGACCCGATGGAAAACTTTAATCGAATGGATTAACATAAAGGAACTAAA
TGCTTTCAATTTGCAACAAGATGAAATTCTTTTGGATAGGGACTTAAGCT
GAATGTTACCAATATTCTTTTCTCAATTGGAGTTAGATTTTACTGCAGTT
CTCCAATGAGGATCAAGTTTTAGGGTATTTTTATCACCTTGACAATCTTT
TGGCCTTTTATCTAAGGGATAATAAAGGGTCATATCGGATCCACCAGGTC
TGTAACACAAGCCTGCAATACTTAAAAAGAAATCCAGGACTAAGTCTAAG
ATTTATGAATGCTTTCACCTTTTAGCTCTTTTTCGAAAATGGGATTAAAA
CAATTCGCTTCATAACATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATTATGTTATCCTGGATTACTACTGGAAAAGTTTGTCATCTTTCGCCTTC
ATTTCTTTTTACATGCTTTACTTATTGATAAATGCATTGCATAATGTtga
taaaaagttgtttttttctaaatattttcctgattttcttGAAGATGtat
ctttaatttttaaagaaaaatagataaaacGTATACTCAATTTGTAGCTC
TTCTCTTCTTTAAGGTACAATGGTATAATGGGCTCCTTCCACACGAATAG
TCATTCAATTTCTGTTCAGTTAATGAGGAAGTTTGTAACGTTTTCAAAGC
TGCAAGAAAACAATACCGACGAAGCACAAGATGAAAGAGAATATGATTAC
ACTAACATCCTGCGTGTATTGGAAAGTGAAGTTATCAACGAAGCTTCTTT
TGATTCTAGcttcgaaattttgaaatcgGCAAGCCGTAGAGCAAGATTTG
ACTCTGAGACACTGGAAGAGCTTCATGAAATGTTCACCTCATATTGTAAA
TTTGAAGGTCTTAAGTGTATTTCATCTGTCGGACGCAGTGCACTTAGAAT
GAAAATAggaaatcaaatttttgcatgCAACCAATACCGTGGATTATCTC
CTTACAGTTATGTTATTGCTCGCTGGCATGATGATACTGGATTCAGCTTC
CGCCCAGCaattattaagaacatttttgaagtTCAGGCTACAGTAAGTGG
GAAGGTGAACAAATATTGGGTAGCTCAGTTGGACTGGTTTAAggattttg
aaatcaaagaagGGACAGAGGAAGCTATtaagaaatcaaaaaagaagaaa
tttcattacGGTAAAAACTCAAACATCACAGTTTGGAATACAACTTTTGA
AAGGAATTCAAAAAACGCCTTTGTCCCAATGAGATGTATAAAGGAACGAT
TTGTATATATTCAAGAATCATTGAAGTTTGATGACGGTCCTGATACAGTA
GTTCTATCTATAAGATTGCCATTTAAttcttttttgtaaataattgTAGT
AAAGCGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCATAGCCGACGTAACT
CAGCTATCTATGAGCTGAACTGAACGGAAAATTTGACctaggaacaatag
aatttctatccccttgAGATTTCGATAAAAATCTTCATCCCTACTGTGGA
AACAATTGCCACTaggactgtgagacaggggtgcaatatttctttctttg
aaTTTTAGCTTACAAAAAGAGCTTGACGTTCAAGAAGAGAAAAAAGAGCG
AGCGGACAAAATGACACGAAAAGTAATCCGTGATGTTAAGGGAAGCAGTA
CTGCATcaaagaaatctaaaaaaggATTCGAAGAAGGAGAGGCTGACATC
AAAGTACGAGAGCTACGAGATTTTAATAACAGTTTAATGAAGAAATTGGG
TCTCATTTGTCGAGATTATCCAGACATTGCCCCCGTTTTAACAATGTATT
GTCAACAATCAGGACTTCCGGTTCCTCCATCACCCGGACCAGGTAGTTCC
CGTGGCTCATCGACTACTGGAAGTGTTCGATCGAATTTGAGTTCAGCTAG
GTATATTTGTTTTTAGGTTTATATACCTCTTGTCTGTATGTATAAGTTTT
GACCGATTTTGGATTTACTCAATATTTTCGGTATTTTCTATTTAAGTACA
CTCTCTTAATAACGGATGCCTTtgctaccagtggataccccttaaaacct
acaacaatAAAAGGTACCCCCTATATTCTGATAGAGTAAAAAGTAAgggc
tgaaactttttctggtgAGTCTAGGCTACCTATGATTTTCTTCCCTGGGT
ATGGTTTTTGCAAAAGCtggtaataaaattttattgcttcgtgaaaaagt
gcaattttagctatttaccccttaaaacctacaaaatggttttcttggac
aacttttcataaaatagtccttttggtctcaaattttgaacagtgattca
cagCAAAGTTACTAATGCTACAATTAGATCATTGGTACCTAAATGTTTTC
Taaactgtacgttaaaatcaaattatacctaaaacctacactattacacc
ttaaaatctacaaacattgaccccttgctcacaacttactgaaactgtGA
AATTGTAATTCAAGTACTGAACCGTGATTCAATCGATCAACTACTTGCTA
GATATCCATTTCCAaaacaatttttgtatttttcaggatttcccataatg
caattgcgcctgtttttttgtcaaaaaacggctttgaagggtcaaaactt
ttattcactTAATTTTTGACGTATGTCACTAATGTTTTTCctaatctcca
tcaaatttgtgacattttgtaTGCAATATGACCGTTGTtttgagaaagtt
gattttcagattttattggccACTACTATAAATGAagctttaaaatagaa
ctttgaAGGCCTTACGATTTCTTTGGGGTGTAACCacggaagaaaaaaaa
gattttttcgtaCCTACCATAAGTAAAAGTACCTAAAAAATATAGATTTT
ATGACCTTACATTACATTCATTTGTGTAATATCTAGATCCAAAAAactag
attttttgaagggatttttgataaaattttcaataacgtcgaattttacg
acactttgcgataattaaaatttttgaaataaggtattttatgaaaatac
CTATATTAgagattgtaaaaaagtgaattatacaatattaaattaagttt
ggtggTTAAGAGAGCCCAAACTGCGATAACGTGCTAAGATTAAAACTACC
GAATTATATATATTCCTTGTTTATCGATTTATCTGTAATAATCGTTATTG
ATTATTTATACTCTACATCGAACAATCTCAAGATTTCCCgataatttaat
tttattaGCATGCAAGAAATTATATTCGCACGCGTATTATCCTGTATCGT
TTGaaatgttattttcatttttgtttttttcagatcATCAGTATCGTCCG
TTCGAAGTGATACAAGCAGTGCACGACAAAGTCGACAAGCCTTGGGTACT
GTGTCTGTTGACCTGTCTTTCAATGCTTTCGCATCACACAGTCCGCTAGG
TAGGTATCACTGAcatttatatatccctggaaccaagctatatccgccat
ctttgatcgacgttttttttaaagttggtacccgcaaagaagccattgta
gtgtttgaaactttacctaacgacaaacggcgctacatcattagtgtaca
agcgaaactagatctagcgctctctccgcgggtaccCATCtcaaaaaaac
tctgatcatAAAATTTTACTTGGCCGGCATTGAGGgatatatataaaggt
cagtgggtatGTATCATTCTGCtactcattgagtttaaagccatAAGGGC
TATAAAAGAATCTCCAACCTTTCTCATATAAGAAAACGTGAAAACTTAGG
ATTTGTGTTGTATTTTGGACGACCAAAGTCGAACCCAGTCACTTACGCAC
GCTGCGGTCTTACcgtttggcttcaatcctttttgcttggaaaaaagatt
acgtcatgaaaatgtgacgcgcgctcgaaaaaaaagttgaacacatttca
actttttccaaCCATTACGTcggatcgcgccaatggaattgcttcatttt
tcttttgaccaatagcgtggaagctttgctagATAAATTGTGATCACGGT
GTGctcaagtggagaccggcctttagtttgctcttttatgattttgatag
tGCTCGCGTCTCTCAGTAAAGTtaaaaaagtgatgcaagtggctctgggt
acgagattgttGGACGATGCATTAGATCTATCACTATTCTTGCCAAAACT
TTTGAGCTAACTTTCCAACactgcttggtttttatttcttttttctttat
cagtctCTTCTGCCACCTTTCCCGCCCGTTTTTCTTCGTCCGCCCTTCTC
CAGTCCTTGCTAGGCAatgggtttttccagaaaaaaaccgtataccccct
gttgaggaggtccatttccgttccaagtgGGTgcggtttgatatgtggcg
gaattccatagggagatgcAAAAATCTGCctaaaataactggaattccgt
gggggtagctttttaaatcctactaaaattaagaattccagaggggttca
aacctgaaattgcttggaattccagggggttgcaGCATTTCCGAccacag
agggatggacctcctcaacaggggtatacggtttttttctggaaaagccc
aataggACAAATAACACAAACCAAAtcatacgtttttttatataaaattc
cACAAAACTGCATGGATAacaaaaattttggtttctaattCAATTATCAG
CTGCGGCTATTGTGACAGTTTAATGATGTctctaaaaaatgattaatgAT
GCAATTTTCAAGTAATTTTACTACTGGTGAAAGTCTTTGTCAGAATACCG
AGTAATTATTGatgaaaaaaggggaaaatatttaaagggataatcagatg
gtttgaaatatttggatTACAGAAACCTTATGTGATCCTTAGTAAAACCT
Tagtaacaattttccaaaatcgagatatcaaaatttataatttttgaaaa
taatgggtttttacacggttcttacgttgaaattctattgttttcatcct
agaagccaaaaacttgtaacttaaatatctcgactttggaaaatagttag
gcaaaaatattttgagattttgctcaggacaatagaaggatcCAACATGt
caaatattacaaaccatctgattatccctttaaagttAAACcacatcttt
tcttttcttaaatTGATGATCAGATATGCGGGACATATTTTTGCCTGCAG
AAATCACCTGTAGTCCTAAGTAAACATCCGAATATTTTTGCCTAATTATT
AATTTGGTCCAAAACACATTTCTTTCGTTATATTTCGATTGTTTTCCtac
taaaactcaaaaaatatagCTTGAATATCCCGAACCGGCaaactacaatc
aaggtcataatatttgataaaaaagggaaatccaccgagaagtttttgaa
ccacaatcgatttgtaagtgctctaaagtaggttggaagggtagagtttt
aactctgagttttaacatgagacttaagactcaaagaaccaaaagttcaa
aaatattccaataagactcagaatatagcctggaagtctgccaacccctc
ccagattgaaatattcgattaaattaaaaagatagccaaaaatcgacttt
ctcgccagaactttaaatcttgaaaaacgttaaaataaccaaaattctca
atatagtatgaccttaattgtagttaggcaaaaatattttgaggtatTGG
TCAGGACAATGGAAGGAATCCACAtgacaaatatttcaaaccatctgatt
atctgTTTAAAGAATAAATATATTCTTATCCTCAAATTGCCTGTACCAGG
CAGCAAAAAAATCTGTGAATTCCTCGGTGAATTCATACCCTTAAAgtgca
ttttctcaaattttcaactgTTTTAAGCCGTGGTTACACTAcattaatat
ctttaaaaattttgaaattttttaatcaaaaatacattaaagaaattaac
tattttctttaaagtctttttgaaatttttgtatgtTGTATCAAATTTTC
AATCGTTTTTTCTCAACTCATTTTCTCACTCAACAAACGATATAAGTGAA
AGGAGGAAGGCTGCAGCACGTATTGTGCTAATTCTTTTGAAACGGAAATT
TCAGaggaaatattcgaaaaagaaaagtcgAGCTTAAAAGGTCTTGCTGG
GTACGCAGTTGGTTAAACTTAAAGTTCAGGAACGAAAAAAGTGCCTACAA
CAACATATTTGCTGAACTTCTTCGTCTACGTGACCAAGAATAATAGAAGA
AGTCTATATCTCAGGATGAACACAGAAACTCGTGGCTGATATCCATCCAT
CATGCAAAATCTTTCTCTTATCCTATCTTTCACCCCTATCTCATATTAGC
CATANAAAGAGGACTGTTACactcagaaattttgaaataaattaatgtaa
tgtaaccacgcctttagggaaaaaagattttttgtcaaaaattagcAATT
GTTCTtggatttgctgaaatttccacccttacagagTGCACTTATCAAAA
AGTCCATCCTTACAGTGGATTTCTGCTATTTTGAAACCTCAACCACCGCA
CCTACTCGTCGGTCAATTtacctgactgcccccccctcTTACCCAATGGC
cacaaacgtcttttggacgtctaatgtacgtttctaggacgtccaaaGGC
CTTAAAGCCGTCCATTGATTTGAATGTCCATTGGTTATGAAGGTGTGACT
TTTGAAGGGAGAAAAAACTTGCTTTTCTATGCATCTGATGATTatgaaat
ttcatttcaatcaatttttcaatCTCAGGAACACCGCCACGATCAACCGC
CAGTTCTCGGGCGTCATCTGGCAAATCAACACCCTCTCGTACTCCTTCAC
GAAGCACTTCCGCCTCATCGAATCGTACCTCCCCAACCAAGAAAACGCCC
ACGTCTAAATCCAATTCACGCCCTCCAACAGGGCAATCATCTGCTTCATC
AAGCAAAAGATAGATAGAAACCCGTTTGGTTTTTTTGTAGATGGTGAAGT
GTTAGTTAATACCCTCAAAAGACACACTTTTGGTTTGTGTATATATTTGC
CacaaatactttaggcgtacaaactttcgccaACAGAATGAATTCTTTAT
TCGAGAATCTTCTAAAATCACAATATAAGATAGTCTCTAAAGCATGTTAT
GTTGCCATTAAAACCCCTCTCAAGGTTTAAGATCAACTTTTTTaatacat
cttttcgaccgtagccgccaattaccgcgcgggcatttttttgttcgTCT
TATCccaaccgtcccagtccttttttcgcacctatagaccatagaaaaaa
tgttcaaaaagtattagatcgagtttagtgggataaaagtGGTACGCGCC
TGACCGTGCgaacggtcgaaaaggtgtattgaataaatttagaacgccat
gttaAAAATACACTATGTACTGCCATGCAAACATTATGTCTAGGGtttaa
taaatgaaaatttaagcACAAATCTTAGAAAGCCAACCTTGCTATTGATA
GTTACGTATTACTGTATGCTGTGTTTCCTGCAGCAGAGACGGTTAGTTTT
TTGTTGCACTTTACCGTCTTTCGATTTTGTAGGTCACAAATgggtcaagt
tgaacatttacaagaatttttgtcattggattggtcgttaactattcaaa
gaaaaacttttattatagttttctaaagaacgcgtcatctctattgtttt
gaatagccaattatgtgagcatcttgtaaaaacttcaatacAACTGCACA
AATGCGGGTTGTTCTAAATTTTTAAGGATAGAGGAGTTCTAAGCCCACTA
ATTCAGGGAGGCCAGGGGGTACTTAAGTAAACTGGGTGCCGGTTATGTGT
GAGCTTTTAGGTTCCCTTtttacaccctcgaaagtccctcAAATGGGTAC
AAAgaccattaaaaagcaattgagtctctgtaagggttccaaaattacga
aaataaaaaatcgtaaattcataaattcttgaaattcggactaaaatttg
aaaattttggctgaaattttgactgaaatagtctttctaagggtggcaaa
aacgtcaaaaatggacaacattttcgaaattcagtctctctaag

Coding sequence (CDS) from alignment at scaffold_6:21468..39861+

>TCONS_00071138 ID=TCONS_00071138|Name=TCONS_00071138|organism=Clytia hemisphaerica|type=CDS|length=1773bp|location=Sequence derived from alignment at scaffold_6:21468..39861+ (Clytia hemisphaerica)
ATGACACGAAAAGTAATCCGTGATGTTAAGGGAAGCAGTACTGCATcaaa
gaaatctaaaaaaggATTCGAAGAAGGAGAGGCTGACATCAAAGTACGAG
AGCTACGAGATTTTAATAACAGTTTAATGAAGAAATTGGGTCTCATTTGT
CGAGATTATCCAGACATTGCCCCCGTTTTAACAATGTATTGTCAACAATC
AGGACTTCCGGTTCCTCCATCACCCGGACCAGGTAGTTCCCGTGGCTCAT
CGACTACTGGAAGTGTTCGATCGAATTTGAGTTCAGCTAGatcATCAGTA
TCGTCCGTTCGAAGTGATACAAGCAGTGCACGACAAAGTCGACAAGCCTT
GGGTACTGTGTCTGTTGACCTGTCTTTCAATGCTTTCGCATCACACAGTC
CGCTAGGAACACCGCCACGATCAACCGCCAGTTCTCGGGCGTCATCTGGC
AAATCAACACCCTCTCGTACTCCTTCACGAAGCACTTCCGCCTCATCGAA
TCGTACCTCCCCAACCAAGAAAACGCCCACGTCTAAATCCAATTCACGCC
CTCCAACAGGGCAATCATCTGCTTCATCAAGCAAAAGATAGATGACACGA
AAAGTAATCCGTGATGTTAAGGGAAGCAGTACTGCATcaaagaaatctaa
aaaaggATTCGAAGAAGGAGAGGCTGACATCAAAGTACGAGAGCTACGAG
ATTTTAATAACAGTTTAATGAAGAAATTGGGTCTCATTTGTCGAGATTAT
CCAGACATTGCCCCCGTTTTAACAATGTATTGTCAACAATCAGGACTTCC
GGTTCCTCCATCACCCGGACCAGGTAGTTCCCGTGGCTCATCGACTACTG
GAAGTGTTCGATCGAATTTGAGTTCAGCTAGatcATCAGTATCGTCCGTT
CGAAGTGATACAAGCAGTGCACGACAAAGTCGACAAGCCTTGGGTACTGT
GTCTGTTGACCTGTCTTTCAATGCTTTCGCATCACACAGTCCGCTAGGAA
CACCGCCACGATCAACCGCCAGTTCTCGGGCGTCATCTGGCAAATCAACA
CCCTCTCGTACTCCTTCACGAAGCACTTCCGCCTCATCGAATCGTACCTC
CCCAACCAAGAAAACGCCCACGTCTAAATCCAATTCACGCCCTCCAACAG
GGCAATCATCTGCTTCATCAAGCAAAAGATAGATGACACGAAAAGTAATC
CGTGATGTTAAGGGAAGCAGTACTGCATcaaagaaatctaaaaaaggATT
CGAAGAAGGAGAGGCTGACATCAAAGTACGAGAGCTACGAGATTTTAATA
ACAGTTTAATGAAGAAATTGGGTCTCATTTGTCGAGATTATCCAGACATT
GCCCCCGTTTTAACAATGTATTGTCAACAATCAGGACTTCCGGTTCCTCC
ATCACCCGGACCAGGTAGTTCCCGTGGCTCATCGACTACTGGAAGTGTTC
GATCGAATTTGAGTTCAGCTAGatcATCAGTATCGTCCGTTCGAAGTGAT
ACAAGCAGTGCACGACAAAGTCGACAAGCCTTGGGTACTGTGTCTGTTGA
CCTGTCTTTCAATGCTTTCGCATCACACAGTCCGCTAGGAACACCGCCAC
GATCAACCGCCAGTTCTCGGGCGTCATCTGGCAAATCAACACCCTCTCGT
ACTCCTTCACGAAGCACTTCCGCCTCATCGAATCGTACCTCCCCAACCAA
GAAAACGCCCACGTCTAAATCCAATTCACGCCCTCCAACAGGGCAATCAT
CTGCTTCATCAAGCAAAAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044219XLOC_044219Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071138-proteinTCONS_00071138-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071138-exon-scaffold_6-1491911889:21468..22584TCONS_00071138-exon-scaffold_6-1491911889:21468..22584Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1510915933:21468..22584TCONS_00071138-exon-scaffold_6-1510915933:21468..22584Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1575043694:21468..22584TCONS_00071138-exon-scaffold_6-1575043694:21468..22584Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1491911889:33376..33717TCONS_00071138-exon-scaffold_6-1491911889:33376..33717Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1510915933:33376..33717TCONS_00071138-exon-scaffold_6-1510915933:33376..33717Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1575043694:33376..33717TCONS_00071138-exon-scaffold_6-1575043694:33376..33717Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1491911889:35101..35216TCONS_00071138-exon-scaffold_6-1491911889:35101..35216Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1510915933:35101..35216TCONS_00071138-exon-scaffold_6-1510915933:35101..35216Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1575043694:35101..35216TCONS_00071138-exon-scaffold_6-1575043694:35101..35216Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1491911889:38546..38799TCONS_00071138-exon-scaffold_6-1491911889:38546..38799Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1510915933:38546..38799TCONS_00071138-exon-scaffold_6-1510915933:38546..38799Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1575043694:38546..38799TCONS_00071138-exon-scaffold_6-1575043694:38546..38799Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1491911889:39350..39861TCONS_00071138-exon-scaffold_6-1491911889:39350..39861Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1510915933:39350..39861TCONS_00071138-exon-scaffold_6-1510915933:39350..39861Clytia hemisphaericaexon
TCONS_00071138-exon-scaffold_6-1575043694:39350..39861TCONS_00071138-exon-scaffold_6-1575043694:39350..39861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:21468..39861 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.75302	2.98394	0.511524	0.438696	8.59163	9.78154	4.79967	6.23453	4.53585	4.4082	2.69932	3.51114	1.64562	2.5102	1.19121	1.38828	1.40786	2.3258	1.68412	1.85671	1.9364	2.34501	1.66969	2.62881	3.04747	6.33383	1.74957	1.89177	0.960288	1.11211
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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