TCONS_00071135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071135
Unique NameTCONS_00071135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071135 ID=TCONS_00071135|Name=TCONS_00071135|organism=Clytia hemisphaerica|type=transcript|length=727bp
TTTAATCCAGTTTTTCACAGTATCAAAAGTTAAGTCCTCCAGATTGTTGA
TTTCAGAAGCTTGCAATTCTTCTTTAACATTGTTAAAATATTCAGTTAAT
TTTGTAGCCagaaatatttcagttaaatctGTAAAGTCACAGTGCATTTC
CTTCAACATTAAATGTAAACAGGCTTCCAGAATGTAGTGATGCATTCCAT
TAATATGTGATGTTGATGATTGATGATCAATTTCATTTACTGatgatttt
gaaagaaagtattgtgacctttttcttcttttctgtttcgTTTCCTCTTG
AAGTGGTGTCTTTGCATTGTCGCAGTTCCGACAAGTACATTTACTTGAGC
ACGGcacattttcttttttgcaaGAACACATAAATGGATTGATACAGCGT
GGTTCTGACTTGCCTTCTTTCTTTTTGATTCTTGTGCCACAACGACAAAA
GGCTCTGGATTTTCCAGGGTCATGTTTGGTTAGCAAATGATATGAAGACA
TGGTTATGtcataaaaaacaaatatcaactCATTACTTATTTCCTCAGGT
AAGATGGGAAACATGGGCATTCCATGACACGAAGGTATCACCAAAATAGG
AAGAGAAAAGGCATTTGCAGCAATCAGAGGAAGCACACATTGAAGAAACT
GCAGTTTATTTTCTTATAGAAATGTTGTACAATTACCTTCATCACTTTCA
ATTAGACTGTCATACAAGAAACAGCGG
Run BLAST on NCBI

protein sequence of TCONS_00071135-protein

>TCONS_00071135-protein ID=TCONS_00071135-protein|Name=TCONS_00071135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MPMFPILPEEISNELIFVFYDITMSSYHLLTKHDPGKSRAFCRCGTRIKK
KEGKSEPRCINPFMCSCKKENVPCSSKCTCRNCDNAKTPLQEETKQKRRK
RSQYFLSKSSVNEIDHQSSTSHINGMHHYILEACLHLMLKEMHCDFTDLT
EIFLATKLTEYFNNVKEELQASEINNLEDLTFDTVKNWIK
Run BLAST on NCBI

transcript from alignment at scaffold_59:49075..49801

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071135 ID=TCONS_00071135|Name=TCONS_00071135|organism=Clytia hemisphaerica|type=transcript|length=727bp|location=Sequence derived from alignment at scaffold_59:49075..49801 (Clytia hemisphaerica)
CCGCTGTTTCTTGTATGACAGTCTAATTGAAAGTGATGAAGGTAATTGTA
CAACATTTCTATAAGAAAATAAACTGCAGTTTCTTCAATGTGTGCTTCCT
CTGATTGCTGCAAATGCCTTTTCTCTTCCTATTTTGGTGATACCTTCGTG
TCATGGAATGCCCATGTTTCCCATCTTACCTGAGGAAATAAGTAATGagt
tgatatttgttttttatgaCATAACCATGTCTTCATATCATTTGCTAACC
AAACATGACCCTGGAAAATCCAGAGCCTTTTGTCGTTGTGGCACAAGAAT
CAAAAAGAAAGAAGGCAAGTCAGAACCACGCTGTATCAATCCATTTATGT
GTTCttgcaaaaaagaaaatgtgCCGTGCTCAAGTAAATGTACTTGTCGG
AACTGCGACAATGCAAAGACACCACTTCAAGAGGAAAcgaaacagaaaag
aagaaaaaggtcacaatactttctttcaaaatcatCAGTAAATGAAATTG
ATCATCAATCATCAACATCACATATTAATGGAATGCATCACTACATTCTG
GAAGCCTGTTTACATTTAATGTTGAAGGAAATGCACTGTGACTTTACaga
tttaactgaaatatttctGGCTACAAAATTAACTGAATATTTTAACAATG
TTAAAGAAGAATTGCAAGCTTCTGAAATCAACAATCTGGAGGACTTAACT
TTTGATACTGTGAAAAACTGGATTAAA

Coding sequence (CDS) from alignment at scaffold_59:49075..49801

>TCONS_00071135 ID=TCONS_00071135|Name=TCONS_00071135|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_59:49075..49801 (Clytia hemisphaerica)
ATGCCCATGTTTCCCATCTTACCTGAGGAAATAAGTAATGagttgatatt
tgttttttatgaCATAACCATGTCTTCATATCATTTGCTAACCAAACATG
ACCCTGGAAAATCCAGAGCCTTTTGTCGTTGTGGCACAAGAATCAAAAAG
AAAGAAGGCAAGTCAGAACCACGCTGTATCAATCCATTTATGTGTTCttg
caaaaaagaaaatgtgCCGTGCTCAAGTAAATGTACTTGTCGGAACTGCG
ACAATGCAAAGACACCACTTCAAGAGGAAAcgaaacagaaaagaagaaaa
aggtcacaatactttctttcaaaatcatCAGTAAATGAAATTGATCATCA
ATCATCAACATCACATATTAATGGAATGCATCACTACATTCTGGAAGCCT
GTTTACATTTAATGTTGAAGGAAATGCACTGTGACTTTACagatttaact
gaaatatttctGGCTACAAAATTAACTGAATATTTTAACAATGTTAAAGA
AGAATTGCAAGCTTCTGAAATCAACAATCTGGAGGACTTAACTTTTGATA
CTGTGAAAAACTGGATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044217XLOC_044217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071135-exon-scaffold_59-1491911889:49075..49801TCONS_00071135-exon-scaffold_59-1491911889:49075..49801Clytia hemisphaericaexon
TCONS_00071135-exon-scaffold_59-1510915933:49075..49801TCONS_00071135-exon-scaffold_59-1510915933:49075..49801Clytia hemisphaericaexon
TCONS_00071135-exon-scaffold_59-1575043694:49075..49801TCONS_00071135-exon-scaffold_59-1575043694:49075..49801Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071135-proteinTCONS_00071135-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:49075..49801 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50556	3.69741	1.01089	0.0758683	9.38782	5.05011	3.48813	5.65118	2.00175	2.7243	4.30536	3.53248	3.90986	2.9989	3.41965	4.59166	2.5119	3.71071	1.99561	0.944672	1.849	1.61497	1.66444	2.54197	2.9125	3.97895	0.72252	0.47835	0.719953	0.591888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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