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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071123 ID=TCONS_00071123|Name=TCONS_00071123|organism=Clytia hemisphaerica|type=transcript|length=1965bp
GTTGAGTCCTTAAAGAGCTCGGAATTGATCAATTTCGAGAGGGTCTATAC
TGCTGCATGTTCCTGGGTAGAAATATCTTTCCCAACCATTTCTAATCATC
AcctttgtttttccttttaacCAGAATTTACTAAACAAACGGCATGAGTA
CCAACAGCGTTTACCATGATGGTGAGTTCGAGGTTCCACCCAGTGAAGCC
ACATCTCTCCTTTGTAAGAACGAGACATCGAACGGCTACTGCACCATCTC
TTGTGAAGAGAAAAGCAATAAGGAGGAGGagaattttttcatgaaatcgA
CTTCAAGTATCGATTCTGGATGCGAAGAGCACGAGATTAACCAATCACAA
ATCTCCCATCGTTCAATTTTGGCAACTCTGGTTGAGAAAGTATCCGAGGA
TAATAAAGCGCCTTTGTTTTTGACCATATTTACCATTCTACCCGTTCTCC
AGGGAAGCGCTGTGCTTGGTGTCCCTTACGCCTTCTTAGTTGGTGGTAAA
GCTTTTCTGCCAGCAGCTTTGTTTATATGTGTTATCGCAACTATCTGCTC
CAACCTCTTGATTGACAGTTTGTATGAGGTTTCACCACGAAGTCAACGTC
GTAAAAGAGTCTACGATGGTTATGAGGACTTAGCGTTGGCTTGTTGGGGA
CGGTTTGGATCGCATGTCGTCAAAGCAATGACTATTTTATATTTCGCCAT
GAACAATGTTGTTAACATGGTGTTGTTATTCAAATCACTGGATAATTTGT
TGCACGGGTTGTTACCGATCACAACTAACGAGTTAGGATACCTGTTTGTG
TTACTTTTGTTGCCAATCCTGTTTGGTGTTCGTCGATTCTCCATCTTCGG
CTACTTCGGATTGATCGGCACAGTAGCTGTTTTGATCGCTTGCATAACCT
CAATCGTGGTATTTATACAACATTCAGGTGATTGGGCAACTCATTACCAT
GAGCTACCAACGATAGATTGGGAACGATATCCTGTTGCTATCAGTATAAT
GATGTATACAGTGATCATAGCACCAACCCTACCCAACATTGAAGCAACCA
TGACCGACCGTTCTCAAGCCCCAGCTTCTGTTTACATATCATTTGGAATT
TCAAGTATCTTCAAATCTATTTACGGGATTATTGCAGTATTAACTTTCGG
TTTATCAACTAAAGAATTAATTGCGACAAATGTTTCCGAGTTATCCATCC
CTTCACGTTATATCATGTCTATTATGTTGATTGTGTACGTCTTCTGTAAC
TCAAGTTACTTCATCTATCTGATGCTAGATATCATCGATCAAATCCTAAT
AAAAAACGTGTCCGGTAAAATCGCGTCTGGTGAGAGGTACCGAATACCTT
GGATGTTGTTTTCCAGACCTCTATGTTTGGTGATCCTGGTTGTGACGAGT
CTTGTGATGCCTTTCTTCGCCCTGGTGAGTGGCGTCGTCGGAGCAATCTG
TGGATCTTTCCTGGCTTTCATCTCACCAGTGCTTTTTCACTTGAAACTGA
AATGGAATAACATGAGTTTGCTCCGAAGAGTGATGGAAATTCTTTTATTG
ATTCTGACAATTCTTTTGGGAAGCTTGACGACTTTCACTTCAATGAATGA
ACTCATAAAAGCCATCAGAATTCATCATGATGTGTAAGACATTTTAAAAC
CtatttattttgttcttttagTTAGGATATGTTTTAAGTTTTAGGTAGga
actttttagaattttagtgAAACTTTTAGTGTATTTTTTATCAGTCTAAT
TTTCATCagtttataaataatttttatccAATTAACAAAAGTACTCATTC
ACCCGGTTAATTTATGAAACTAAATACATTTTTCTGTTTTAAGCATATGA
ACACAAGTTTCACTCCATTATTTCCCCTTGCGACTTACGAGGAATGCATA
ATCATTTTACAGATATTTTAAATATcgtttttgacaaatttttaacACCG
AAATACACAATACTT Run BLAST on NCBI protein sequence of TCONS_00071123-protein >TCONS_00071123-protein ID=TCONS_00071123-protein|Name=TCONS_00071123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
MSTNSVYHDGEFEVPPSEATSLLCKNETSNGYCTISCEEKSNKEEENFFM
KSTSSIDSGCEEHEINQSQISHRSILATLVEKVSEDNKAPLFLTIFTILP
VLQGSAVLGVPYAFLVGGKAFLPAALFICVIATICSNLLIDSLYEVSPRS
QRRKRVYDGYEDLALACWGRFGSHVVKAMTILYFAMNNVVNMVLLFKSLD
NLLHGLLPITTNELGYLFVLLLLPILFGVRRFSIFGYFGLIGTVAVLIAC
ITSIVVFIQHSGDWATHYHELPTIDWERYPVAISIMMYTVIIAPTLPNIE
ATMTDRSQAPASVYISFGISSIFKSIYGIIAVLTFGLSTKELIATNVSEL
SIPSRYIMSIMLIVYVFCNSSYFIYLMLDIIDQILIKNVSGKIASGERYR
IPWMLFSRPLCLVILVVTSLVMPFFALVSGVVGAICGSFLAFISPVLFHL
KLKWNNMSLLRRVMEILLLILTILLGSLTTFTSMNELIKAIRIHHDV Run BLAST on NCBI transcript from alignment at scaffold_58:1401534..1403498 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071123 ID=TCONS_00071123|Name=TCONS_00071123|organism=Clytia hemisphaerica|type=transcript|length=1965bp|location=Sequence derived from alignment at scaffold_58:1401534..1403498 (Clytia hemisphaerica)
AAGTATTGTGTATTTCGGTgttaaaaatttgtcaaaaacgATATTTAAAA
TATCTGTAAAATGATTATGCATTCCTCGTAAGTCGCAAGGGGAAATAATG
GAGTGAAACTTGTGTTCATATGCTTAAAACAGAAAAATGTATTTAGTTTC
ATAAATTAACCGGGTGAATGAGTACTTTTGTTAATTggataaaaattatt
tataaactGATGAAAATTAGACTGATAAAAAATACACTAAAAGTTTcact
aaaattctaaaaagttcCTACCTAAAACTTAAAACATATCCTAActaaaa
gaacaaaataaataGGTTTTAAAATGTCTTACACATCATGATGAATTCTG
ATGGCTTTTATGAGTTCATTCATTGAAGTGAAAGTCGTCAAGCTTCCCAA
AAGAATTGTCAGAATCAATAAAAGAATTTCCATCACTCTTCGGAGCAAAC
TCATGTTATTCCATTTCAGTTTCAAGTGAAAAAGCACTGGTGAGATGAAA
GCCAGGAAAGATCCACAGATTGCTCCGACGACGCCACTCACCAGGGCGAA
GAAAGGCATCACAAGACTCGTCACAACCAGGATCACCAAACATAGAGGTC
TGGAAAACAACATCCAAGGTATTCGGTACCTCTCACCAGACGCGATTTTA
CCGGACACGTTTTTTATTAGGATTTGATCGATGATATCTAGCATCAGATA
GATGAAGTAACTTGAGTTACAGAAGACGTACACAATCAACATAATAGACA
TGATATAACGTGAAGGGATGGATAACTCGGAAACATTTGTCGCAATTAAT
TCTTTAGTTGATAAACCGAAAGTTAATACTGCAATAATCCCGTAAATAGA
TTTGAAGATACTTGAAATTCCAAATGATATGTAAACAGAAGCTGGGGCTT
GAGAACGGTCGGTCATGGTTGCTTCAATGTTGGGTAGGGTTGGTGCTATG
ATCACTGTATACATCATTATACTGATAGCAACAGGATATCGTTCCCAATC
TATCGTTGGTAGCTCATGGTAATGAGTTGCCCAATCACCTGAATGTTGTA
TAAATACCACGATTGAGGTTATGCAAGCGATCAAAACAGCTACTGTGCCG
ATCAATCCGAAGTAGCCGAAGATGGAGAATCGACGAACACCAAACAGGAT
TGGCAACAAAAGTAACACAAACAGGTATCCTAACTCGTTAGTTGTGATCG
GTAACAACCCGTGCAACAAATTATCCAGTGATTTGAATAACAACACCATG
TTAACAACATTGTTCATGGCGAAATATAAAATAGTCATTGCTTTGACGAC
ATGCGATCCAAACCGTCCCCAACAAGCCAACGCTAAGTCCTCATAACCAT
CGTAGACTCTTTTACGACGTTGACTTCGTGGTGAAACCTCATACAAACTG
TCAATCAAGAGGTTGGAGCAGATAGTTGCGATAACACATATAAACAAAGC
TGCTGGCAGAAAAGCTTTACCACCAACTAAGAAGGCGTAAGGGACACCAA
GCACAGCGCTTCCCTGGAGAACGGGTAGAATGGTAAATATGGTCAAAAAC
AAAGGCGCTTTATTATCCTCGGATACTTTCTCAACCAGAGTTGCCAAAAT
TGAACGATGGGAGATTTGTGATTGGTTAATCTCGTGCTCTTCGCATCCAG
AATCGATACTTGAAGTcgatttcatgaaaaaattctCCTCCTCCTTATTG
CTTTTCTCTTCACAAGAGATGGTGCAGTAGCCGTTCGATGTCTCGTTCTT
ACAAAGGAGAGATGTGGCTTCACTGGGTGGAACCTCGAACTCACCATCAT
GGTAAACGCTGTTGGTACTCATGCCGTTTGTTTAGTAAATTCTGgttaaa
aggaaaaacaaaggTGATGATTAGAAATGGTTGGGAAAGATATTTCTACC
CAGGAACATGCAGCAGTATAGACCCTCTCGAAATTGATCAATTCCGAGCT
CTTTAAGGACTCAAC Coding sequence (CDS) from alignment at scaffold_58:1401534..1403498 >TCONS_00071123 ID=TCONS_00071123|Name=TCONS_00071123|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_58:1401534..1403498 (Clytia hemisphaerica)
TTACACATCATGATGAATTCTGATGGCTTTTATGAGTTCATTCATTGAAG
TGAAAGTCGTCAAGCTTCCCAAAAGAATTGTCAGAATCAATAAAAGAATT
TCCATCACTCTTCGGAGCAAACTCATGTTATTCCATTTCAGTTTCAAGTG
AAAAAGCACTGGTGAGATGAAAGCCAGGAAAGATCCACAGATTGCTCCGA
CGACGCCACTCACCAGGGCGAAGAAAGGCATCACAAGACTCGTCACAACC
AGGATCACCAAACATAGAGGTCTGGAAAACAACATCCAAGGTATTCGGTA
CCTCTCACCAGACGCGATTTTACCGGACACGTTTTTTATTAGGATTTGAT
CGATGATATCTAGCATCAGATAGATGAAGTAACTTGAGTTACAGAAGACG
TACACAATCAACATAATAGACATGATATAACGTGAAGGGATGGATAACTC
GGAAACATTTGTCGCAATTAATTCTTTAGTTGATAAACCGAAAGTTAATA
CTGCAATAATCCCGTAAATAGATTTGAAGATACTTGAAATTCCAAATGAT
ATGTAAACAGAAGCTGGGGCTTGAGAACGGTCGGTCATGGTTGCTTCAAT
GTTGGGTAGGGTTGGTGCTATGATCACTGTATACATCATTATACTGATAG
CAACAGGATATCGTTCCCAATCTATCGTTGGTAGCTCATGGTAATGAGTT
GCCCAATCACCTGAATGTTGTATAAATACCACGATTGAGGTTATGCAAGC
GATCAAAACAGCTACTGTGCCGATCAATCCGAAGTAGCCGAAGATGGAGA
ATCGACGAACACCAAACAGGATTGGCAACAAAAGTAACACAAACAGGTAT
CCTAACTCGTTAGTTGTGATCGGTAACAACCCGTGCAACAAATTATCCAG
TGATTTGAATAACAACACCATGTTAACAACATTGTTCATGGCGAAATATA
AAATAGTCATTGCTTTGACGACATGCGATCCAAACCGTCCCCAACAAGCC
AACGCTAAGTCCTCATAACCATCGTAGACTCTTTTACGACGTTGACTTCG
TGGTGAAACCTCATACAAACTGTCAATCAAGAGGTTGGAGCAGATAGTTG
CGATAACACATATAAACAAAGCTGCTGGCAGAAAAGCTTTACCACCAACT
AAGAAGGCGTAAGGGACACCAAGCACAGCGCTTCCCTGGAGAACGGGTAG
AATGGTAAATATGGTCAAAAACAAAGGCGCTTTATTATCCTCGGATACTT
TCTCAACCAGAGTTGCCAAAATTGAACGATGGGAGATTTGTGATTGGTTA
ATCTCGTGCTCTTCGCATCCAGAATCGATACTTGAAGTcgatttcatgaa
aaaattctCCTCCTCCTTATTGCTTTTCTCTTCACAAGAGATGGTGCAGT
AGCCGTTCGATGTCTCGTTCTTACAAAGGAGAGATGTGGCTTCACTGGGT
GGAACCTCGAACTCACCATCATGGTAAACGCTGTTGGTACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071123-exon-scaffold_58-1491911889:1401534..1403498 | TCONS_00071123-exon-scaffold_58-1491911889:1401534..1403498 | Clytia hemisphaerica | exon |
| TCONS_00071123-exon-scaffold_58-1510915933:1401534..1403498 | TCONS_00071123-exon-scaffold_58-1510915933:1401534..1403498 | Clytia hemisphaerica | exon |
| TCONS_00071123-exon-scaffold_58-1575043694:1401534..1403498 | TCONS_00071123-exon-scaffold_58-1575043694:1401534..1403498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1401534..1403498 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013057 | AA_transpt_TM |
Blast
BLAST of TCONS_00071123 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.358e-18 Identity = 96/363 (26.45%), Postives = 172/363 (47.38%), Query Frame = 3
Query: 429 FTILPVLQGSAVLGVPYAFLVGGKAFLPAALFICVIATICSNLLIDSLYEVSPRSQRRKRVYDGYEDLALACWG-RF---GSHVVKAMTILYFAMNNVVNMVLLFKSLDNLLHGLLPITTNEXXXXXXXXXXXXXFGVRRFSIFGYFGLIGTVAVLIACITSIVVFIQHSGDWATHYHELPTIDWERYPVAISIMMYTVIIAPTLPNIEATMTDRSQAPASVXXXXXXXXXXXXXXXXXAVLTFGLSTKELIATNVSELSIPSRYIMSIMLIVYVFCNSSYFIYLMLDIIDQILIKNVSGKI----ASGERYRIPWMLFSRPLCLVILVVTSLVMPFFALVSGVVGAICGSFLAFISPVLFHL 1493
+ + +QG VLG+PYA L GG L +F V+ +LI LYE + + RV D Y +A AC RF G VV I+ M ++ +V+ + N GL P++ + +LLP F ++ F L+ T+A + I I + + DWA + ID +++P++I I++++ LP++E M S+ + + + + K ++ ++A LT+ TKE+I N L R +++I L+ + + ++++++ L + S SG+ W L R +V ++ ++ +P FAL+ G+ G++ G+ L F+ P LFHL
Sbjct: 123 WNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEV-VRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGL-PVSQKSWSIIATAVLLPCAF-LKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKF-YIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDN---LPGSIRAVVNIFLVAKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHL 478
The following BLAST results are available for this feature:
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