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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071118 ID=TCONS_00071118|Name=TCONS_00071118|organism=Clytia hemisphaerica|type=transcript|length=1562bp
CTTTCAACAAATTACAGTTTTTTTGTGCACATAGACATTTTATATGTAAA
CCTATCCGTTTTTCTTCAAACAAAAGtataaaaaccttaaaaaacgTAGG
TAGGTATATAAAGTTCTTTGCGGTTTAACAAGAgttcgtttttttataaa
aatcttttttttcccaccgaaaatgtttgtttttattgttgttcTTCGCT
CTGTTCTTCGATATCCTCGTTCGCTTTATTGTTCGTTTGCTTGTTCTCAT
GAAACATTTGTATTTCAACGTTCTGATGAAGTTTCAGTTCTCCATTATGA
TGCGCCAACACCACAAAGCTCTCCTCTTTATAGATGATGTTATGAACGGG
TGGTCGTGGTGTTGATGGTAGGGCGGTATCCGTCTTGAAGACATTGACCA
GGATTTGTCTGTAAGAGTCGTGTCTGAGTAAGTAAATGACAGGGTTGATT
GAACTGTTTGCTGAGATGAAGATGAAACCGATCTTAGAATGAAGTTCGTA
ATTTATTGCTTTTGCGTCGACGATGAATACCAGTTTGGCTGTGAAGAGAT
AAAAGAAACAGAAGAAAAGGCCCGCTACCAAGACCAGTACGTTATAGTTG
ACTCGTGTCTCCATTTGATCGGATAGCGTATTCAAAGCGGCTGCACGTAC
GCTTCGATTGCTACGTACGATCTGCTTGGTGATCAAGATGTAGAAGGTGG
CCATGGAGACCATTGTTGTGAATGTGATGATTGTatctatgacttttttc
aatttgtgGTCGATAAAGTATATTGAAGGAAGAAGAAGTACGAAGatata
taaaatcaaaatagtGTACATAGTCATTCTCTTTGATGAAATCTGCTCAT
AAAAAACCGCTCGTGTGATCTTGATGTATCTGTTCAAAGCGATTAGAGAA
ATGATGAGAGATGATGTCCAAAATCCAACAGTCATCAGATAAGAGTTGAC
GACGGCTTTTGTTGTCGATGTTGTTTTGTCCAAGTCGTAGTAAATATGAT
AGGGGATGATGATCAAGGCTTTTAAGAGATCAGCGATGTTCAAAGATAAC
AAGAGTTTCTCAGCGTTACTTAACGAAACATTTCCCTGACCTCGCTTCAA
TTTCCATAAACAATACAGTGAAATGAAATTCCCAAGGATACCAGAAACTG
AAATCAAACTGTTTGTCACGGTGAAATAAACAACCAATTTTTCCATGTTT
TAATAGTTATTAGAAATCGAGAGTAAATAATCTTGAATAAGATTTCGTAG
ATAACTTTGGTCGTTTATACACTTCGTACCTGGagcaaaataaatttcta
ttgtatttatgttcttgattttgataaactatggttaaaaatatcccttt
ttacgttttctttGGTTCAAATGATGGCAGCAACTTTCATCACTGTCTCC
CACTAGCTCTCAAAAATATGCCGAAAGGTATCAATTCGTAAATGAGAGAA
TCGCAATATTGCACTGACTTCACCTTTTGCTTTGTGCATTATCAGGCAGG
TGCATCCATCAGCCTTTTTAAGCCCTCTTCCTCTACTTTGTTTCTTTTCA
GAGTAAAAGAAC Run BLAST on NCBI protein sequence of TCONS_00071118-protein >TCONS_00071118-protein ID=TCONS_00071118-protein|Name=TCONS_00071118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MEKLVVYFTVTNSLISVSGILGNFISLYCLWKLKRGQGNVSLSNAEKLLL
SLNIADLLKALIIIPYHIYYDLDKTTSTTKAVVNSYLMTVGFWTSSLIIS
LIALNRYIKITRAVFYEQISSKRMTMYTILILYIFVLLLPSIYFIDHKLK
KVIDTIITFTTMVSMATFYILITKQIVRSNRSVRAAALNTLSDQMETRVN
YNVLVLVAGLFFCFFYLFTAKLVFIVDAKAINYELHSKIGFIFISANSSI
NPVIYLLRHDSYRQILVNVFKTDTALPSTPRPPVHNIIYKEESFVVLAHH
NGELKLHQNVEIQMFHENKQTNNKANEDIEEQSEEQQ Run BLAST on NCBI transcript from alignment at scaffold_58:1318833..1320394 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071118 ID=TCONS_00071118|Name=TCONS_00071118|organism=Clytia hemisphaerica|type=transcript|length=1562bp|location=Sequence derived from alignment at scaffold_58:1318833..1320394 (Clytia hemisphaerica)
GTTCTTTTACTCTGAAAAGAAACAAAGTAGAGGAAGAGGGCTTAAAAAGG
CTGATGGATGCACCTGCCTGATAATGCACAAAGCAAAAGGTGAAGTCAGT
GCAATATTGCGATTCTCTCATTTACGAATTGATACCTTTCGGCATATTTT
TGAGAGCTAGTGGGAGACAGTGATGAAAGTTGCTGCCATCATTTGAACCa
aagaaaacgtaaaaagggatatttttaaccatagtttatcaaaatcaaga
acataaatacaatagaaatttattttgctCCAGGTACGAAGTGTATAAAC
GACCAAAGTTATCTACGAAATCTTATTCAAGATTATTTACTCTCGATTTC
TAATAACTATTAAAACATGGAAAAATTGGTTGTTTATTTCACCGTGACAA
ACAGTTTGATTTCAGTTTCTGGTATCCTTGGGAATTTCATTTCACTGTAT
TGTTTATGGAAATTGAAGCGAGGTCAGGGAAATGTTTCGTTAAGTAACGC
TGAGAAACTCTTGTTATCTTTGAACATCGCTGATCTCTTAAAAGCCTTGA
TCATCATCCCCTATCATATTTACTACGACTTGGACAAAACAACATCGACA
ACAAAAGCCGTCGTCAACTCTTATCTGATGACTGTTGGATTTTGGACATC
ATCTCTCATCATTTCTCTAATCGCTTTGAACAGATACATCAAGATCACAC
GAGCGGTTTTTTATGAGCAGATTTCATCAAAGAGAATGACTATGTACact
attttgattttatatatCTTCGTACTTCTTCTTCCTTCAATATACTTTAT
CGACcacaaattgaaaaaagtcatagatACAATCATCACATTCACAACAA
TGGTCTCCATGGCCACCTTCTACATCTTGATCACCAAGCAGATCGTACGT
AGCAATCGAAGCGTACGTGCAGCCGCTTTGAATACGCTATCCGATCAAAT
GGAGACACGAGTCAACTATAACGTACTGGTCTTGGTAGCGGGCCTTTTCT
TCTGTTTCTTTTATCTCTTCACAGCCAAACTGGTATTCATCGTCGACGCA
AAAGCAATAAATTACGAACTTCATTCTAAGATCGGTTTCATCTTCATCTC
AGCAAACAGTTCAATCAACCCTGTCATTTACTTACTCAGACACGACTCTT
ACAGACAAATCCTGGTCAATGTCTTCAAGACGGATACCGCCCTACCATCA
ACACCACGACCACCCGTTCATAACATCATCTATAAAGAGGAGAGCTTTGT
GGTGTTGGCGCATCATAATGGAGAACTGAAACTTCATCAGAACGTTGAAA
TACAAATGTTTCATGAGAACAAGCAAACGAACAATAAAGCGAACGAGGAT
ATCGAAGAACAGAGCGAAgaacaacaataaaaacaaacattttcggtggg
aaaaaaaagatttttataaaaaaacgaacTCTTGTTAAACCGCAAAGAAC
TTTATATACCTACCTAcgttttttaaggtttttataCTTTTGTTTGAAGA
AAAACGGATAGGTTTACATATAAAATGTCTATGTGCACAAAAAAACTGTA
ATTTGTTGAAAG Coding sequence (CDS) from alignment at scaffold_58:1318833..1320394 >TCONS_00071118 ID=TCONS_00071118|Name=TCONS_00071118|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_58:1318833..1320394 (Clytia hemisphaerica)
ATGGAAAAATTGGTTGTTTATTTCACCGTGACAAACAGTTTGATTTCAGT
TTCTGGTATCCTTGGGAATTTCATTTCACTGTATTGTTTATGGAAATTGA
AGCGAGGTCAGGGAAATGTTTCGTTAAGTAACGCTGAGAAACTCTTGTTA
TCTTTGAACATCGCTGATCTCTTAAAAGCCTTGATCATCATCCCCTATCA
TATTTACTACGACTTGGACAAAACAACATCGACAACAAAAGCCGTCGTCA
ACTCTTATCTGATGACTGTTGGATTTTGGACATCATCTCTCATCATTTCT
CTAATCGCTTTGAACAGATACATCAAGATCACACGAGCGGTTTTTTATGA
GCAGATTTCATCAAAGAGAATGACTATGTACactattttgattttatata
tCTTCGTACTTCTTCTTCCTTCAATATACTTTATCGACcacaaattgaaa
aaagtcatagatACAATCATCACATTCACAACAATGGTCTCCATGGCCAC
CTTCTACATCTTGATCACCAAGCAGATCGTACGTAGCAATCGAAGCGTAC
GTGCAGCCGCTTTGAATACGCTATCCGATCAAATGGAGACACGAGTCAAC
TATAACGTACTGGTCTTGGTAGCGGGCCTTTTCTTCTGTTTCTTTTATCT
CTTCACAGCCAAACTGGTATTCATCGTCGACGCAAAAGCAATAAATTACG
AACTTCATTCTAAGATCGGTTTCATCTTCATCTCAGCAAACAGTTCAATC
AACCCTGTCATTTACTTACTCAGACACGACTCTTACAGACAAATCCTGGT
CAATGTCTTCAAGACGGATACCGCCCTACCATCAACACCACGACCACCCG
TTCATAACATCATCTATAAAGAGGAGAGCTTTGTGGTGTTGGCGCATCAT
AATGGAGAACTGAAACTTCATCAGAACGTTGAAATACAAATGTTTCATGA
GAACAAGCAAACGAACAATAAAGCGAACGAGGATATCGAAGAACAGAGCG
AAgaacaacaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071118-exon-scaffold_58-1491911889:1318833..1320394 | TCONS_00071118-exon-scaffold_58-1491911889:1318833..1320394 | Clytia hemisphaerica | exon |
| TCONS_00071118-exon-scaffold_58-1510915933:1318833..1320394 | TCONS_00071118-exon-scaffold_58-1510915933:1318833..1320394 | Clytia hemisphaerica | exon |
| TCONS_00071118-exon-scaffold_58-1575043694:1318833..1320394 | TCONS_00071118-exon-scaffold_58-1575043694:1318833..1320394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1318833..1320394 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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