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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071111 ID=TCONS_00071111|Name=TCONS_00071111|organism=Clytia hemisphaerica|type=transcript|length=1711bp
cGCAACCTTCGAGTCTCAATTGGTCTTCATTCCCGCTATACCTGGTATAA
AGAATGAATAAAGATAGGAACCAAATTTTAGttaaaatggttaaaataaa
tttaagcGAAATAAGAAAATCAAAGAGTCTACGATTTTTCAACAAGCGTT
AATTCTTGTCCATTTTTTTCTCGAACTTGTTTGGTCTCTTGAATCTGTTT
TTTGACAATCCATAAGACAAGGGCGAGGGAGAGTGTAGCAGCGACCACTG
AGCAACCATAAAACAACACTTTAGCaccaaatttttcataaatatatCCA
CCTAGGGTGTTGCCCACACATTCGGGAAGTGAATATTGAACAGCATTGAT
GATTCCATACATACTTGTAAGAACACGTTTCGGAGATTTCCTTAAAACAA
ACTCCAAACCGACCGTCTCTGTGATTGGATAATCGAACATCGAGAGAATT
TGAACAACACTGATTAACTTCGGGTCATTGAAAGCAGCCACCAGGCTGAA
CCTCAACACTAACACAATCAGTAATATAAATATGGTGGGAAATGAACCTT
TCACGAGACGCACCAGCTTTGGGATGATCAGAAAACCGATAAAGTTTCCA
ACAGTATAAATAATAAGGTACAAGTTCAAGTCCATGGTAGTCGCGTTCAG
ATCTTTAAGGTATGGAAAACTGTAATAAACAATTTCCGACATCAAACAAC
CGATACCAAATAACGTCAATACCATGACTAACATCTCCTCCTCAAGAAGT
GTCCGAAATAAAACTGTCCGGAATGGTTGTTGTTCAAGcttttctttttc
tcctttctCCTCAAGTGGTGCTTCTTCTTCGCTTTCCTTCAAATCGTGAA
CATCCATCTTCAGTCCATGAAACACCCAAAGCAAGGTTAGCATATAACAA
ACGGAAAGAAATCCGTACAAAATGAACACACCGGTATAACAAGTCACGTG
ATCACTCGGGAACAATGCGATCGAATAATTCCCCAATATTGGACCAACCA
TGTGACCAAGAACACCAAAGATGCGTTGAGGTCCATACTTATTTTTCTCG
CCATTTTCGTTGGATTGTTTGATTCGTAACATAACTCCAGTATCTATAAA
AGCATCTAAGGAGCCATCGAATAGCGATTGGATTAAATTGACAGCAATCA
TCACCCAAAACAAAACTTGCTGGTCAGGGGGACTGGTACTAGTGGGAGAT
TCTGTACTGAATGGCGAGGTAGTATTCAGGTTTGATGTTGTGGTCGAGTT
TCGGTTCTCCTCACTTCCAGCTGAGCAATACAGAAATGTTTTGGAACCAA
ACTTCAACGCAAGGACAGGCTGCATGGCGTTGAATATGAATACGATAACG
GAACAAAGCACAATCGTCAGTCGATGAATCCGATATTTATCCGATATCAT
TCCAATGAATGGAGAAAACCCGATAACGCTGACCAACCGTAAGCCAACAA
TTAATCCAGCTTGACTTTTCGATAAACCGATGCTCAATAGAAACAATACT
AAGTTCATGCGAATTGCAAACTCTTTTGCGATCAACAAAAAATACGCAAG
TTTACAAGGAATCATGCTTCTACTGATATTATACCACGCCATTTCCTTTC
GATTTtcctctgaaaataaaaaaattacagaaataagtatgaagtgaaaa
ttttgtctcttcttttcttctctgaatatgaaagaaatagaaatgtatga
atttctttttt Run BLAST on NCBI protein sequence of TCONS_00071111-protein >TCONS_00071111-protein ID=TCONS_00071111-protein|Name=TCONS_00071111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp
KRNSYISISFIFREEKKRQNFHFILISVIFLFSEENRKEMAWYNISRSMI
PCKLAYFLLIAKEFAIRMNLVLFLLSIGLSKSQAGLIVGLRLVSVIGFSP
FIGMISDKYRIHRLTIVLCSVIVFIFNAMQPVLALKFGSKTFLYCSAGSE
ENRNSTTTSNLNTTSPFSTESPTSTSPPDQQVLFWVMIAVNLIQSLFDGS
LDAFIDTGVMLRIKQSNENGEKNKYGPQRIFGVLGHMVGPILGNYSIALF
PSDHVTCYTGVFILYGFLSVCYMLTLLWVFHGLKMDVHDLKESEEEAPLE
EKGEKEKLEQQPFRTVLFRTLLEEEMLVMVLTLFGIGCLMSEIVYYSFPY
LKDLNATTMDLNLYLIIYTVGNFIGFLIIPKLVRLVKGSFPTIFILLIVL
VLRFSLVAAFNDPKLISVVQILSMFDYPITETVGLEFVLRKSPKRVLTSM
YGIINAVQYSLPECVGNTLGGYIYEKFGAKVLFYGCSVVAATLSLALVLW
IVKKQIQETKQVREKNGQELTLVEKS Run BLAST on NCBI transcript from alignment at scaffold_58:1233417..1235127 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071111 ID=TCONS_00071111|Name=TCONS_00071111|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at scaffold_58:1233417..1235127 (Clytia hemisphaerica)
aaaaaagaaattcatacatttctatttctttcatattcagagaagaaaag
aagagacaaaattttcacttcatacttatttctgtaatttttttattttc
agaggaAAATCGAAAGGAAATGGCGTGGTATAATATCAGTAGAAGCATGA
TTCCTTGTAAACTTGCGTATTTTTTGTTGATCGCAAAAGAGTTTGCAATT
CGCATGAACTTAGTATTGTTTCTATTGAGCATCGGTTTATCGAAAAGTCA
AGCTGGATTAATTGTTGGCTTACGGTTGGTCAGCGTTATCGGGTTTTCTC
CATTCATTGGAATGATATCGGATAAATATCGGATTCATCGACTGACGATT
GTGCTTTGTTCCGTTATCGTATTCATATTCAACGCCATGCAGCCTGTCCT
TGCGTTGAAGTTTGGTTCCAAAACATTTCTGTATTGCTCAGCTGGAAGTG
AGGAGAACCGAAACTCGACCACAACATCAAACCTGAATACTACCTCGCCA
TTCAGTACAGAATCTCCCACTAGTACCAGTCCCCCTGACCAGCAAGTTTT
GTTTTGGGTGATGATTGCTGTCAATTTAATCCAATCGCTATTCGATGGCT
CCTTAGATGCTTTTATAGATACTGGAGTTATGTTACGAATCAAACAATCC
AACGAAAATGGCGAGAAAAATAAGTATGGACCTCAACGCATCTTTGGTGT
TCTTGGTCACATGGTTGGTCCAATATTGGGGAATTATTCGATCGCATTGT
TCCCGAGTGATCACGTGACTTGTTATACCGGTGTGTTCATTTTGTACGGA
TTTCTTTCCGTTTGTTATATGCTAACCTTGCTTTGGGTGTTTCATGGACT
GAAGATGGATGTTCACGATTTGAAGGAAAGCGAAGAAGAAGCACCACTTG
AGGagaaaggagaaaaagaaaagCTTGAACAACAACCATTCCGGACAGTT
TTATTTCGGACACTTCTTGAGGAGGAGATGTTAGTCATGGTATTGACGTT
ATTTGGTATCGGTTGTTTGATGTCGGAAATTGTTTATTACAGTTTTCCAT
ACCTTAAAGATCTGAACGCGACTACCATGGACTTGAACTTGTACCTTATT
ATTTATACTGTTGGAAACTTTATCGGTTTTCTGATCATCCCAAAGCTGGT
GCGTCTCGTGAAAGGTTCATTTCCCACCATATTTATATTACTGATTGTGT
TAGTGTTGAGGTTCAGCCTGGTGGCTGCTTTCAATGACCCGAAGTTAATC
AGTGTTGTTCAAATTCTCTCGATGTTCGATTATCCAATCACAGAGACGGT
CGGTTTGGAGTTTGTTTTAAGGAAATCTCCGAAACGTGTTCTTACAAGTA
TGTATGGAATCATCAATGCTGTTCAATATTCACTTCCCGAATGTGTGGGC
AACACCCTAGGTGGatatatttatgaaaaatttggtGCTAAAGTGTTGTT
TTATGGTTGCTCAGTGGTCGCTGCTACACTCTCCCTCGCCCTTGTCTTAT
GGATTGTCAAAAAACAGATTCAAGAGACCAAACAAGTTCGAGAAAAAAAT
GGACAAGAATTAACGCTTGTTGAAAAATCGTAGACTCTTTGATTTTCTTA
TTTCgcttaaatttattttaaccattttaaCTAAAATTTGGTTCCTATCT
TTATTCATTCTTTATACCAGGTATAGCGGGAATGAAGACCAATTGAGACT
CGAAGGTTGCg Coding sequence (CDS) from alignment at scaffold_58:1233417..1235127 >TCONS_00071111 ID=TCONS_00071111|Name=TCONS_00071111|organism=Clytia hemisphaerica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_58:1233417..1235127 (Clytia hemisphaerica)
aaaagaaattcatacatttctatttctttcatattcagagaagaaaagaa
gagacaaaattttcacttcatacttatttctgtaatttttttattttcag
aggaAAATCGAAAGGAAATGGCGTGGTATAATATCAGTAGAAGCATGATT
CCTTGTAAACTTGCGTATTTTTTGTTGATCGCAAAAGAGTTTGCAATTCG
CATGAACTTAGTATTGTTTCTATTGAGCATCGGTTTATCGAAAAGTCAAG
CTGGATTAATTGTTGGCTTACGGTTGGTCAGCGTTATCGGGTTTTCTCCA
TTCATTGGAATGATATCGGATAAATATCGGATTCATCGACTGACGATTGT
GCTTTGTTCCGTTATCGTATTCATATTCAACGCCATGCAGCCTGTCCTTG
CGTTGAAGTTTGGTTCCAAAACATTTCTGTATTGCTCAGCTGGAAGTGAG
GAGAACCGAAACTCGACCACAACATCAAACCTGAATACTACCTCGCCATT
CAGTACAGAATCTCCCACTAGTACCAGTCCCCCTGACCAGCAAGTTTTGT
TTTGGGTGATGATTGCTGTCAATTTAATCCAATCGCTATTCGATGGCTCC
TTAGATGCTTTTATAGATACTGGAGTTATGTTACGAATCAAACAATCCAA
CGAAAATGGCGAGAAAAATAAGTATGGACCTCAACGCATCTTTGGTGTTC
TTGGTCACATGGTTGGTCCAATATTGGGGAATTATTCGATCGCATTGTTC
CCGAGTGATCACGTGACTTGTTATACCGGTGTGTTCATTTTGTACGGATT
TCTTTCCGTTTGTTATATGCTAACCTTGCTTTGGGTGTTTCATGGACTGA
AGATGGATGTTCACGATTTGAAGGAAAGCGAAGAAGAAGCACCACTTGAG
GagaaaggagaaaaagaaaagCTTGAACAACAACCATTCCGGACAGTTTT
ATTTCGGACACTTCTTGAGGAGGAGATGTTAGTCATGGTATTGACGTTAT
TTGGTATCGGTTGTTTGATGTCGGAAATTGTTTATTACAGTTTTCCATAC
CTTAAAGATCTGAACGCGACTACCATGGACTTGAACTTGTACCTTATTAT
TTATACTGTTGGAAACTTTATCGGTTTTCTGATCATCCCAAAGCTGGTGC
GTCTCGTGAAAGGTTCATTTCCCACCATATTTATATTACTGATTGTGTTA
GTGTTGAGGTTCAGCCTGGTGGCTGCTTTCAATGACCCGAAGTTAATCAG
TGTTGTTCAAATTCTCTCGATGTTCGATTATCCAATCACAGAGACGGTCG
GTTTGGAGTTTGTTTTAAGGAAATCTCCGAAACGTGTTCTTACAAGTATG
TATGGAATCATCAATGCTGTTCAATATTCACTTCCCGAATGTGTGGGCAA
CACCCTAGGTGGatatatttatgaaaaatttggtGCTAAAGTGTTGTTTT
ATGGTTGCTCAGTGGTCGCTGCTACACTCTCCCTCGCCCTTGTCTTATGG
ATTGTCAAAAAACAGATTCAAGAGACCAAACAAGTTCGAGAAAAAAATGG
ACAAGAATTAACGCTTGTTGAAAAATCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071111-exon-scaffold_58-1491911889:1233417..1235127 | TCONS_00071111-exon-scaffold_58-1491911889:1233417..1235127 | Clytia hemisphaerica | exon |
| TCONS_00071111-exon-scaffold_58-1510915933:1233417..1235127 | TCONS_00071111-exon-scaffold_58-1510915933:1233417..1235127 | Clytia hemisphaerica | exon |
| TCONS_00071111-exon-scaffold_58-1575043694:1233417..1235127 | TCONS_00071111-exon-scaffold_58-1575043694:1233417..1235127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1233417..1235127 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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