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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071096 ID=TCONS_00071096|Name=TCONS_00071096|organism=Clytia hemisphaerica|type=transcript|length=813bp
AGCTTGCAAAATAAAATGTACAAAGTTTCTTCTAAGTTgacaaattttaa
gattttcctAGGTTTAAGATAGGGAAAAATATTAACATTTATTTACATTG
TGGTAAGAAATTTTTtacagaagatttttcaaagatggcTTCCATTCCTT
TTGTTGAAAGGCTTGTCGCAAGAAGGTTCAATGATTGTTTGTGAGGACGT
CATTAATAATCAGGGAAGCAACAAATATATCCAAACATCACATTACAAAA
CATGCAATCGTATCCTTGGTGATAGTGGCAGTGAAGACATCCATCGAATC
CATCATAGCCTCCACCAATACCTGCGAAGCGCATGATTTGAGGGTCTGTC
GGCAACTTCAGTTTTTGTTGTTCTTCCGCCGTTGAAGTGAGAGGTCTCAA
AGCTTTCATATGTCTCCCGTAATACTTGGCAATAGGGTTGACAAATGATT
TGAAAAAAGCTTTGGAGACTTTCTTCGTCTTTTGTTTGGTGTTTCGTTCT
GTGGTGTTGGATTTTGTGAGAAGTTTTTTAACTGCTTTGAAGAAATACTT
GGTGATAGGTTTCATTGCTGTGAACATCTCTTCAGGAATCTCAACTTGAT
CCGCATCTAATGTCTTCTTTGGCACCGATATTGTAACGTTCTCCTTCTCC
GATTTCCTATTTGGNGATGTCTTCTTCGGCACCGATATTGTAACGTTCTC
CTTCTCCGATTTCTTGTTTGGCAGAGCTTGGACGACCAACATTGAGAATG
CTAACATGAAGAGTGTCGAAAATTTCATctttgttggtttgtttgttttc
ttgtttgtttatg Run BLAST on NCBI protein sequence of TCONS_00071096-protein >TCONS_00071096-protein ID=TCONS_00071096-protein|Name=TCONS_00071096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MKFSTLFMLAFSMLVVQALPNKKSEKENVTISVPKKTXPNRKSEKENVTI
SVPKKTLDADQVEIPEEMFTAMKPITKYFFKAVKKLLTKSNTTERNTKQK
TKKVSKAFFKSFVNPIAKYYGRHMKALRPLTSTAEEQQKLKLPTDPQIMR
FAGIGGGYDGFDGCLHCHYHQGYDCMFCNVMFGYICCFPDY Run BLAST on NCBI transcript from alignment at scaffold_58:715053..715865 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071096 ID=TCONS_00071096|Name=TCONS_00071096|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at scaffold_58:715053..715865 (Clytia hemisphaerica)
cataaacaaacaagaaaacaaacaaaccaacaaagATGAAATTTTCGACA
CTCTTCATGTTAGCATTCTCAATGTTGGTCGTCCAAGCTCTGCCAAACAA
GAAATCGGAGAAGGAGAACGTTACAATATCGGTGCCGAAGAAGACATCNC
CAAATAGGAAATCGGAGAAGGAGAACGTTACAATATCGGTGCCAAAGAAG
ACATTAGATGCGGATCAAGTTGAGATTCCTGAAGAGATGTTCACAGCAAT
GAAACCTATCACCAAGTATTTCTTCAAAGCAGTTAAAAAACTTCTCACAA
AATCCAACACCACAGAACGAAACACCAAACAAAAGACGAAGAAAGTCTCC
AAAGCTTTTTTCAAATCATTTGTCAACCCTATTGCCAAGTATTACGGGAG
ACATATGAAAGCTTTGAGACCTCTCACTTCAACGGCGGAAGAACAACAAA
AACTGAAGTTGCCGACAGACCCTCAAATCATGCGCTTCGCAGGTATTGGT
GGAGGCTATGATGGATTCGATGGATGTCTTCACTGCCACTATCACCAAGG
ATACGATTGCATGTTTTGTAATGTGATGTTTGGATATATTTGTTGCTTCC
CTGATTATTAATGACGTCCTCACAAACAATCATTGAACCTTCTTGCGACA
AGCCTTTCAACAAAAGGAATGGAAgccatctttgaaaaatcttctgtaAA
AAATTTCTTACCACAATGTAAATAAATGTTAATATTTTTCCCTATCTTAA
ACCTaggaaaatcttaaaatttgtcAACTTAGAAGAAACTTTGTACATTT
TATTTTGCAAGCT Coding sequence (CDS) from alignment at scaffold_58:715053..715865 >TCONS_00071096 ID=TCONS_00071096|Name=TCONS_00071096|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_58:715053..715865 (Clytia hemisphaerica)
ATGAAATTTTCGACACTCTTCATGTTAGCATTCTCAATGTTGGTCGTCCA
AGCTCTGCCAAACAAGAAATCGGAGAAGGAGAACGTTACAATATCGGTGC
CGAAGAAGACATCNCCAAATAGGAAATCGGAGAAGGAGAACGTTACAATA
TCGGTGCCAAAGAAGACATTAGATGCGGATCAAGTTGAGATTCCTGAAGA
GATGTTCACAGCAATGAAACCTATCACCAAGTATTTCTTCAAAGCAGTTA
AAAAACTTCTCACAAAATCCAACACCACAGAACGAAACACCAAACAAAAG
ACGAAGAAAGTCTCCAAAGCTTTTTTCAAATCATTTGTCAACCCTATTGC
CAAGTATTACGGGAGACATATGAAAGCTTTGAGACCTCTCACTTCAACGG
CGGAAGAACAACAAAAACTGAAGTTGCCGACAGACCCTCAAATCATGCGC
TTCGCAGGTATTGGTGGAGGCTATGATGGATTCGATGGATGTCTTCACTG
CCACTATCACCAAGGATACGATTGCATGTTTTGTAATGTGATGTTTGGAT
ATATTTGTTGCTTCCCTGATTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071096-exon-scaffold_58-1491911889:715053..715865 | TCONS_00071096-exon-scaffold_58-1491911889:715053..715865 | Clytia hemisphaerica | exon |
| TCONS_00071096-exon-scaffold_58-1510915933:715053..715865 | TCONS_00071096-exon-scaffold_58-1510915933:715053..715865 | Clytia hemisphaerica | exon |
| TCONS_00071096-exon-scaffold_58-1575043694:715053..715865 | TCONS_00071096-exon-scaffold_58-1575043694:715053..715865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:715053..715865 . |
Blast
The following BLAST results are available for this feature:
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