TCONS_00071094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071094
Unique NameTCONS_00071094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071094 ID=TCONS_00071094|Name=TCONS_00071094|organism=Clytia hemisphaerica|type=transcript|length=2391bp
atttttccaagAGTAACACTGTTTTCAAATATAGATTTAGaaatagattt
attttcaacataAGGTCTTCTAAAAGTCCACGGGCACTTTCTAAAATTAG
TTTCAGTGATATAactttaaatattgaaaagcttacatgtgatgacgtca
tcttgtaTTGTCAGACAGGCTGGAAAAAACTCGGACACGAAAAGCATAAT
AGATCGATAGTTTTTTCTTCTTGATAGAAATAAACCCTGTccatttgaaa
aaactttttaattctTCCTATTACGTAACAAAagagaacaaaaaaagaaa
aggtatcATTGTCTGGTTATGTACAAAAATgtttgtcaaataaaaaataa
gttCTGTTAAGTACAAGCTATTTacaattttgtcaaattcattCCTTTCG
CTTTTTATTGTTCTTCAATATGTTAGTTTAACAATCTAATGGTTAGTTTT
TTCTCTGTATTGATCATTCTTTGTCATTGCCAGAGTTTCCATATATGCTG
ACTCATGCTTTTGTCAGCTTTTTGTGGTTAGTGAGCACCCATCACCCTAA
ACAAAACCTCCTTGTCAACATTTGACTTGTCATTGTCAACGATCTTTCCT
TTCTAAACTTCTACCAAATGTTTTTAATTCTAACTGAATTTCATTGTACA
TTTTGGGCTCTTTGTTGATTTTTAGAAGTTTATCAGAATGTTGGTTGATG
ATCTCCATGCAGCGATCCCAGAATCCAGCGCGATCTCCGTCGAACAGGAA
GGGTTTCAAGGGGTAACTAATTTCATGTCCATTGTACGCGTAACACATGT
ACAACGTGCTCATCATCAGTGCTTTCAGTTGAGCCAGTGATCGAACTTTG
GGCGGGATGACTTCTCGAAGCAACATGTAAAGTACCATCATGTTAGGCTG
AGAGATAAAGGCCATCTCTTGCCATCCACTCAAAACTAAATTCCTATCCA
CAGATCTTATCCATCCGACCACAATGGACGGTTTGAGACCTTCTAAGTTT
CGACAACGCAAGTACACATAACAGCCGATATACTTCAGTGTTTCACTCAA
GTTAAGTGTTCCGTAGAAATGTTTATCAGGGTTGTGTTGAATTTTACAAA
GAGTAAGTTTGTGTTTGTCATCAGTGCTGGGAATGACATTGATTGGTTCG
TGGGAGGTTTTTGGTTTGGGTGCCACATTTTCTTTGTTCAAcacttgttg
ttgttgttgttgttgttgttggacaGTGTCGTTAAAGAGTTTTTGCTTGT
TCTTCTTTCGGTTGGAAGTCTTGGACCAATACGAAGGAACTTTTTCGTTC
AGAAATTTGTTGTCTTTGCCAGTGAAAGCAGGGAAACATTCCTGAACGAT
GTTCATTTTGGAAAAGGGGACACTTTTCTTACTTTCTTGATGATTGTGTT
TCTCATTCAGAATGTTCTGTTTcaagttgttgttgtttggttCAAAGTTT
GTTTCTCCTTTGCCAGATTTGGTTGGAGTCGTCAAAATGGCTCCCATGAT
GCTTCACAAATTTTGTATTGAGTAAAAcctttttcgtcacttttccttCG
ATATTTATTCCATGTCTTGTGTCTGTCAAAAAATATTGGAAGATGAAAAC
TAAAATGAACTTCTTTTTCTTCGATGTCAGTTTTCTACcttttctcaact
ttttttccAGTCCAGTTCAACCAAGGgagaaaaatattatatatgAAAGC
AGCTGAATTTTCTCTGCACCAATCACAATCCCAGAAAAACAACCTTCTAT
TGTCTGTGTTTCATGAAAAGTTTCTCTCTCTCTCGTTCTTAatccttctt
cttctttcttttttgttttaagcgAGAAAACCAGCTGTGAACGACCAGCA
gcttttctttttgttcttcggaataaaacaactttttattcctttttact
tttttattctttttttatcttcttcttttttatttcgatGTTACTTTTAT
TGTGAACCGATGTACGCTTTGCGTCAAAACTATTTTCTCTTTCTCAGCGT
TGAATCATCGTCACTTCGTCTCAGAATAAATTTTCCTctcacaaaaaaat
ttcttcactgacCATGAAATGAATTCCAACAAAAATCGACATCAATCTCT
CTTCATAAAACATCTGGTTTTACGATTCATCTTTCGACCGTATCCAAGAC
GATTTTCTTGTTGCTATGTAGATTTCAGGGGGTAAACTGTTGAATTAGAT
AGCAATTTTAGATTGTGTTGATTTTGCTCTAAACCTgtacaaacaaaaga
aaagatttgCACAAAAATACGTTAGCAGCAATgacgataaaaaaaattta
tcatgaTTTCGTTTTAAAGCTGAAAAATATTACTTTTGACACAACCGAAC
CCCCTGATCGTTGATAAGTGAACACGAGGGTAAAACGGCTT
Run BLAST on NCBI

protein sequence of TCONS_00071094-protein

>TCONS_00071094-protein ID=TCONS_00071094-protein|Name=TCONS_00071094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MGAILTTPTKSGKGETNFEPNNNNLKQNILNEKHNHQESKKSVPFSKMNI
VQECFPAFTGKDNKFLNEKVPSYWSKTSNRKKNKQKLFNDTVQQQQQQQQ
QVLNKENVAPKPKTSHEPINVIPSTDDKHKLTLCKIQHNPDKHFYGTLNL
SETLKYIGCYVYLRCRNLEGLKPSIVVGWIRSVDRNLVLSGWQEMAFISQ
PNMMVLYMLLREVIPPKVRSLAQLKALMMSTLYMCYAYNGHEISYPLKPF
LFDGDRAGFWDRCMEIINQHSDKLLKINKEPKMYNEIQLELKTFGRSLER
KDR
Run BLAST on NCBI

transcript from alignment at scaffold_58:673627..676017

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071094 ID=TCONS_00071094|Name=TCONS_00071094|organism=Clytia hemisphaerica|type=transcript|length=2391bp|location=Sequence derived from alignment at scaffold_58:673627..676017 (Clytia hemisphaerica)
AAGCCGTTTTACCCTCGTGTTCACTTATCAACGATCAGGGGGTTCGGTTG
TGTCAAAAGTAATATTTTTCAGCTTTAAAACGAAAtcatgataaattttt
tttatcgtcATTGCTGCTAACGTATTTTTGTGcaaatcttttcttttgtt
tgtacAGGTTTAGAGCAAAATCAACACAATCTAAAATTGCTATCTAATTC
AACAGTTTACCCCCTGAAATCTACATAGCAACAAGAAAATCGTCTTGGAT
ACGGTCGAAAGATGAATCGTAAAACCAGATGTTTTATGAAGAGAGATTGA
TGTCGATTTTTGTTGGAATTCATTTCATGgtcagtgaagaaatttttttg
tgagAGGAAAATTTATTCTGAGACGAAGTGACGATGATTCAACGCTGAGA
AAGAGAAAATAGTTTTGACGCAAAGCGTACATCGGTTCACAATAAAAGTA
ACatcgaaataaaaaagaagaagataaaaaaagaataaaaaagtaaaaag
gaataaaaagttgttttattccgaagaacaaaaagaaaagcTGCTGGTCG
TTCACAGCTGGTTTTCTcgcttaaaacaaaaaagaaagaagaagaaggat
TAAGAACGAGAGAGAGAGAAACTTTTCATGAAACACAGACAATAGAAGGT
TGTTTTTCTGGGATTGTGATTGGTGCAGAGAAAATTCAGCTGCTTTcata
tataatatttttctcCCTTGGTTGAACTGGACTggaaaaaaagttgagaa
aagGTAGAAAACTGACATCGAAGAAAAAGAAGTTCATTTTAGTTTTCATC
TTCCAATATTTTTTGACAGACACAAGACATGGAATAAATATCGaaggaaa
agtgacgaaaaaggTTTTACTCAATACAAAATTTGTGAAGCATCATGGGA
GCCATTTTGACGACTCCAACCAAATCTGGCAAAGGAGAAACAAACTTTGa
accaaacaacaacaacttgAAACAGAACATTCTGAATGAGAAACACAATC
ATCAAGAAAGTAAGAAAAGTGTCCCCTTTTCCAAAATGAACATCGTTCAG
GAATGTTTCCCTGCTTTCACTGGCAAAGACAACAAATTTCTGAACGAAAA
AGTTCCTTCGTATTGGTCCAAGACTTCCAACCGAAAGAAGAACAAGCAAA
AACTCTTTAACGACACtgtccaacaacaacaacaacaacaacaacaagtg
TTGAACAAAGAAAATGTGGCACCCAAACCAAAAACCTCCCACGAACCAAT
CAATGTCATTCCCAGCACTGATGACAAACACAAACTTACTCTTTGTAAAA
TTCAACACAACCCTGATAAACATTTCTACGGAACACTTAACTTGAGTGAA
ACACTGAAGTATATCGGCTGTTATGTGTACTTGCGTTGTCGAAACTTAGA
AGGTCTCAAACCGTCCATTGTGGTCGGATGGATAAGATCTGTGGATAGGA
ATTTAGTTTTGAGTGGATGGCAAGAGATGGCCTTTATCTCTCAGCCTAAC
ATGATGGTACTTTACATGTTGCTTCGAGAAGTCATCCCGCCCAAAGTTCG
ATCACTGGCTCAACTGAAAGCACTGATGATGAGCACGTTGTACATGTGTT
ACGCGTACAATGGACATGAAATTAGTTACCCCTTGAAACCCTTCCTGTTC
GACGGAGATCGCGCTGGATTCTGGGATCGCTGCATGGAGATCATCAACCA
ACATTCTGATAAACTTCTAAAAATCAACAAAGAGCCCAAAATGTACAATG
AAATTCAGTTAGAATTAAAAACATTTGGTAGAAGTTTAGAAAGGAAAGAT
CGTTGACAATGACAAGTCAAATGTTGACAAGGAGGTTTTGTTTAGGGTGA
TGGGTGCTCACTAACCACAAAAAGCTGACAAAAGCATGAGTCAGCATATA
TGGAAACTCTGGCAATGACAAAGAATGATCAATACAGAGAAAAAACTAAC
CATTAGATTGTTAAACTAACATATTGAAGAACAATAAAAAGCGAAAGGaa
tgaatttgacaaaattgtAAATAGCTTGTACTTAACAGaacttatttttt
atttgacaaacATTTTTGTACATAACCAGACAATgataccttttcttttt
ttgttctctTTTGTTACGTAATAGGAagaattaaaaagttttttcaaatg
gACAGGGTTTATTTCTATCAAGAAGAAAAAACTATCGATCTATTATGCTT
TTCGTGTCCGAGTTTTTTCCAGCCTGTCTGACAAtacaagatgacgtcat
cacatgtaagcttttcaatatttaaagtTATATCACTGAAACTAATTTTA
GAAAGTGCCCGTGGACTTTTAGAAGACCTtatgttgaaaataaatctatt
tCTAAATCTATATTTGAAAACAGTGTTACTcttggaaaaat

Coding sequence (CDS) from alignment at scaffold_58:673627..676017

>TCONS_00071094 ID=TCONS_00071094|Name=TCONS_00071094|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_58:673627..676017 (Clytia hemisphaerica)
ATGGGAGCCATTTTGACGACTCCAACCAAATCTGGCAAAGGAGAAACAAA
CTTTGaaccaaacaacaacaacttgAAACAGAACATTCTGAATGAGAAAC
ACAATCATCAAGAAAGTAAGAAAAGTGTCCCCTTTTCCAAAATGAACATC
GTTCAGGAATGTTTCCCTGCTTTCACTGGCAAAGACAACAAATTTCTGAA
CGAAAAAGTTCCTTCGTATTGGTCCAAGACTTCCAACCGAAAGAAGAACA
AGCAAAAACTCTTTAACGACACtgtccaacaacaacaacaacaacaacaa
caagtgTTGAACAAAGAAAATGTGGCACCCAAACCAAAAACCTCCCACGA
ACCAATCAATGTCATTCCCAGCACTGATGACAAACACAAACTTACTCTTT
GTAAAATTCAACACAACCCTGATAAACATTTCTACGGAACACTTAACTTG
AGTGAAACACTGAAGTATATCGGCTGTTATGTGTACTTGCGTTGTCGAAA
CTTAGAAGGTCTCAAACCGTCCATTGTGGTCGGATGGATAAGATCTGTGG
ATAGGAATTTAGTTTTGAGTGGATGGCAAGAGATGGCCTTTATCTCTCAG
CCTAACATGATGGTACTTTACATGTTGCTTCGAGAAGTCATCCCGCCCAA
AGTTCGATCACTGGCTCAACTGAAAGCACTGATGATGAGCACGTTGTACA
TGTGTTACGCGTACAATGGACATGAAATTAGTTACCCCTTGAAACCCTTC
CTGTTCGACGGAGATCGCGCTGGATTCTGGGATCGCTGCATGGAGATCAT
CAACCAACATTCTGATAAACTTCTAAAAATCAACAAAGAGCCCAAAATGT
ACAATGAAATTCAGTTAGAATTAAAAACATTTGGTAGAAGTTTAGAAAGG
AAAGATCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044176XLOC_044176Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071094-proteinTCONS_00071094-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071094-exon-scaffold_58-1491911889:673627..676017TCONS_00071094-exon-scaffold_58-1491911889:673627..676017Clytia hemisphaericaexon
TCONS_00071094-exon-scaffold_58-1510915933:673627..676017TCONS_00071094-exon-scaffold_58-1510915933:673627..676017Clytia hemisphaericaexon
TCONS_00071094-exon-scaffold_58-1575043694:673627..676017TCONS_00071094-exon-scaffold_58-1575043694:673627..676017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:673627..676017 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0650371	0.0792768	0.0736383	0.19812	4.58265	3.79454	53.5975	57.7901	58.2994	44.7874	28.3662	44.5488	29.3479	22.561	10.2389	13.7423	23.0811	24.1203	42.9852	55.0732	30.9849	29.0995	14.5039	18.4403	19.9357	27.9191	31.4578	23.6983	2.56261	2.97862
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004944CDK5_activator
IPR013763Cyclin-like
Vocabulary: Molecular Function
TermDefinition
GO:0016534cyclin-dependent protein kinase 5 activator activity
Vocabulary: Cellular Component
TermDefinition
GO:0016533cyclin-dependent protein kinase 5 holoenzyme complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016533 cyclin-dependent protein kinase 5 holoenzyme complex
molecular_function GO:0016534 cyclin-dependent protein kinase 5 activator activity
Blast
[Close]
BLAST of TCONS_00071094 vs. Swiss-Prot (Human)
Match: CD5R1 (Cyclin-dependent kinase 5 activator 1 OS=Homo sapiens GN=CDK5R1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.471e-37
Identity = 65/142 (45.77%), Postives = 100/142 (70.42%), Query Frame = -1 
Query:  622 SETLKYIGCYVYLRCRNLEGLKPSIVVGWIRSVDRNLVLSGWQEMAFISQPNMMVLYMLLREVIPPKVRSLAQLKALMMSTLYMCYAYNGHEISYPLKPFLFDGDRAGFWDRCMEIINQHSDKLLKINKEPKMYNEIQLELK 1047
            SE L+ +G ++  RC  L+ L P+  V W+RSVDR+L+L GWQ+  FI+  N++ LYML R+VI  +V S  +L+A++++ LY+ Y+Y G+EISYPLKPFL +  +  FWDRC+ +IN  S K+L+IN +P  + ++  +LK
Sbjct:  149 SELLRCLGEFLCRRCYRLKHLSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290
The following BLAST results are available for this feature:
BLAST of TCONS_00071094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD5R11.471e-3745.77Cyclin-dependent kinase 5 activator 1 OS=Homo sapi... [more]
back to top