TCONS_00071091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071091
Unique NameTCONS_00071091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071091 ID=TCONS_00071091|Name=TCONS_00071091|organism=Clytia hemisphaerica|type=transcript|length=601bp
NNACAGGTTCAAGCTTTTGATCTTCCAAGTTTTCTCTTGATAGAATTTTC
CACTCCATTATGCCTAAACAATTGCAGATTTTTTGAGCAGATTTCAGTGA
AAGAAATTAACTATAAATTACATGCCATTGTAAGGAGTTGCGGTTTCCAT
TTTGCGTGTGCAATTTTTACTGAAAACAAATGGGTTTATATTGATGATTT
AAATCCTGACAAAATGTTGTATCAAAATATAAATGAATTGTTCGCAGAAA
ATACAGGAGGATGGTTCTTTgctttttacaaaaaacttaATTCAgaagaa
attgattttgcaATTGATACTGATATTCTTCAATCAGCTAAAACTAATGA
CAAAAAAGCTGACGCTTCAACGAAAGTCAGTGAGAATATTGAGACCAAAA
AAGaatttattgttattattttcaggaaaaaagaaaatcttttatttctt
cgTTTAACCAAACGTGTAGTTACTTACTATCTTTTTGTCCCCATGCATTT
CTTATAATCTTGCAATTGACATTGTtatgattatacaatttattatagaa
ttctttaaatattatattgctgcggtggcatgttagtgtaagctatgtac
T
Run BLAST on NCBI

protein sequence of TCONS_00071091-protein

>TCONS_00071091-protein ID=TCONS_00071091-protein|Name=TCONS_00071091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
XQVQAFDLPSFLLIEFSTPLCLNNCRFFEQISVKEINYKLHAIVRSCGFH
FACAIFTENKWVYIDDLNPDKMLYQNINELFAENTGGWFFAFYKKLNSEE
IDFAIDTDILQSAKTNDKKADASTKVSENIETKKEFIVIIFRKKENLLFL
RLTKRVVTYYLFVPMHFL
Run BLAST on NCBI

transcript from alignment at scaffold_58:556562..557162

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071091 ID=TCONS_00071091|Name=TCONS_00071091|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at scaffold_58:556562..557162 (Clytia hemisphaerica)
Agtacatagcttacactaacatgccaccgcagcaatataatatttaaaga
attctataataaattgtataatcataACAATGTCAATTGCAAGATTATAA
GAAATGCATGGGGACAAAAAGATAGTAAGTAACTACACGTTTGGTTAAAc
gaagaaataaaagattttcttttttcctgaaaataataacaataaattCT
TTTTTGGTCTCAATATTCTCACTGACTTTCGTTGAAGCGTCAGCTTTTTT
GTCATTAGTTTTAGCTGATTGAAGAATATCAGTATCAATtgcaaaatcaa
tttcttcTGAATtaagttttttgtaaaaagcAAAGAACCATCCTCCTGTA
TTTTCTGCGAACAATTCATTTATATTTTGATACAACATTTTGTCAGGATT
TAAATCATCAATATAAACCCATTTGTTTTCAGTAAAAATTGCACACGCAA
AATGGAAACCGCAACTCCTTACAATGGCATGTAATTTATAGTTAATTTCT
TTCACTGAAATCTGCTCAAAAAATCTGCAATTGTTTAGGCATAATGGAGT
GGAAAATTCTATCAAGAGAAAACTTGGAAGATCAAAAGCTTGAACCTGTN
N

Coding sequence (CDS) from alignment at scaffold_58:556562..557162

>TCONS_00071091 ID=TCONS_00071091|Name=TCONS_00071091|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_58:556562..557162 (Clytia hemisphaerica)
TTATAAGAAATGCATGGGGACAAAAAGATAGTAAGTAACTACACGTTTGG
TTAAAcgaagaaataaaagattttcttttttcctgaaaataataacaata
aattCTTTTTTGGTCTCAATATTCTCACTGACTTTCGTTGAAGCGTCAGC
TTTTTTGTCATTAGTTTTAGCTGATTGAAGAATATCAGTATCAATtgcaa
aatcaatttcttcTGAATtaagttttttgtaaaaagcAAAGAACCATCCT
CCTGTATTTTCTGCGAACAATTCATTTATATTTTGATACAACATTTTGTC
AGGATTTAAATCATCAATATAAACCCATTTGTTTTCAGTAAAAATTGCAC
ACGCAAAATGGAAACCGCAACTCCTTACAATGGCATGTAATTTATAGTTA
ATTTCTTTCACTGAAATCTGCTCAAAAAATCTGCAATTGTTTAGGCATAA
TGGAGTGGAAAATTCTATCAAGAGAAAACTTGGAAGATCAAAAGCTTGAA
CCTGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044173XLOC_044173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071091-exon-scaffold_58-1491911889:556562..557162TCONS_00071091-exon-scaffold_58-1491911889:556562..557162Clytia hemisphaericaexon
TCONS_00071091-exon-scaffold_58-1510915933:556562..557162TCONS_00071091-exon-scaffold_58-1510915933:556562..557162Clytia hemisphaericaexon
TCONS_00071091-exon-scaffold_58-1575043694:556562..557162TCONS_00071091-exon-scaffold_58-1575043694:556562..557162Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071091-proteinTCONS_00071091-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:556562..557162 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.837108	0.286506	0.751413	0.966086	2.00865	1.62823	2.40603	3.35213	1.38751	2.0783	2.84249	1.17314	1.12223	1.56617	1.13438	1.04098	0.883237	0.766015	1.24207	0.757513	1.73475	2.70206	0.678747	1.058	0.212623	0.799992	0.428843	0.591946	2.34867	1.53997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top