TCONS_00071087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071087
Unique NameTCONS_00071087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071087 ID=TCONS_00071087|Name=TCONS_00071087|organism=Clytia hemisphaerica|type=transcript|length=692bp
CGTATGCTATTTTATTACTATTGAGATAAAAACAATATTAAGGATATGGA
AAACTGTGGAAGTTTATCTCCCTAGTATTCTTGAAGTGAGAGACATTAGT
GTAGATTAGTGTACCTATCTGGGGAATCAAAGCAGTTCACCCTCAGGTCA
GTCAAGGGGTTCGCCAAGGAGCCATCCTATCACCTTACATGTACAACATG
GATGTACAACATCTACACCCAAGAACTTTTTTCGAACATCAAAGCCCTAC
AGATTGGCACCTCACTACCAAATGGTCTTCAGACATGTATTATAGTTTAC
GCTGACGACATTTTACTACTTAGTCCTACCCTCAGAAACCTTCAAACTCT
TATTGACCACTGCGCATCCTTCGGTAAGGAACACGGGCTTAAATTCAACC
AAGCAAAGACCAAAACACAATTTGTCATATCTGGACCCACCAAAATCAAA
TCGCTGACCCTGACTCTTAACGACTGTCAAATATCACAACAAGACACCTT
AACGCATCTCCGATTTCAAtggacaaaaaagaaaaatcatctaTGCTTCA
TACCAAAACTTCTCTATGGCCTTGAATTAGTTGATCTTACAAAATCAGAG
ATGGAGTACCTTGATTCTCAGGCAAGGGCTTGTTTAAAATCTCTATTCAA
TGTATCGAAGAGAAGCAAAAACGACATTCATCGACTGTACAG
Run BLAST on NCBI

protein sequence of TCONS_00071087-protein

>TCONS_00071087-protein ID=TCONS_00071087-protein|Name=TCONS_00071087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MYNIYTQELFSNIKALQIGTSLPNGLQTCIIVYADDILLLSPTLRNLQTL
IDHCASFGKEHGLKFNQAKTKTQFVISGPTKIKSLTLTLNDCQISQQDTL
THLRFQWTKKKNHLCFIPKLLYGLELVDLTKSEMEYLDSQARACLKSLFN
VSKRSKNDIHRLY
Run BLAST on NCBI

transcript from alignment at scaffold_58:416699..417390

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071087 ID=TCONS_00071087|Name=TCONS_00071087|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at scaffold_58:416699..417390 (Clytia hemisphaerica)
CTGTACAGTCGATGAATGTCGTTTTTGCTTCTCTTCGATACATTGAATAG
AGATTTTAAACAAGCCCTTGCCTGAGAATCAAGGTACTCCATCTCTGATT
TTGTAAGATCAACTAATTCAAGGCCATAGAGAAGTTTTGGTATGAAGCAt
agatgatttttcttttttgtccaTTGAAATCGGAGATGCGTTAAGGTGTC
TTGTTGTGATATTTGACAGTCGTTAAGAGTCAGGGTCAGCGATTTGATTT
TGGTGGGTCCAGATATGACAAATTGTGTTTTGGTCTTTGCTTGGTTGAAT
TTAAGCCCGTGTTCCTTACCGAAGGATGCGCAGTGGTCAATAAGAGTTTG
AAGGTTTCTGAGGGTAGGACTAAGTAGTAAAATGTCGTCAGCGTAAACTA
TAATACATGTCTGAAGACCATTTGGTAGTGAGGTGCCAATCTGTAGGGCT
TTGATGTTCGAAAAAAGTTCTTGGGTGTAGATGTTGTACATCCATGTTGT
ACATGTAAGGTGATAGGATGGCTCCTTGGCGAACCCCTTGACTGACCTGA
GGGTGAACTGCTTTGATTCCCCAGATAGGTACACTAATCTACACTAATGT
CTCTCACTTCAAGAATACTAGGGAGATAAACTTCCACAGTTTTCCATATC
CTTAATATTGTTTTTATCTCAATAGTAATAAAATAGCATACG

Coding sequence (CDS) from alignment at scaffold_58:416699..417390

>TCONS_00071087 ID=TCONS_00071087|Name=TCONS_00071087|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_58:416699..417390 (Clytia hemisphaerica)
GTACAGTCGATGAATGTCGTTTTTGCTTCTCTTCGATACATTGAATAGAG
ATTTTAAACAAGCCCTTGCCTGAGAATCAAGGTACTCCATCTCTGATTTT
GTAAGATCAACTAATTCAAGGCCATAGAGAAGTTTTGGTATGAAGCAtag
atgatttttcttttttgtccaTTGAAATCGGAGATGCGTTAAGGTGTCTT
GTTGTGATATTTGACAGTCGTTAAGAGTCAGGGTCAGCGATTTGATTTTG
GTGGGTCCAGATATGACAAATTGTGTTTTGGTCTTTGCTTGGTTGAATTT
AAGCCCGTGTTCCTTACCGAAGGATGCGCAGTGGTCAATAAGAGTTTGAA
GGTTTCTGAGGGTAGGACTAAGTAGTAAAATGTCGTCAGCGTAAACTATA
ATACATGTCTGAAGACCATTTGGTAGTGAGGTGCCAATCTGTAGGGCTTT
GATGTTCGAAAAAAGTTCTTGGGTGTAGATGTTGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044169XLOC_044169Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071087-proteinTCONS_00071087-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071087-exon-scaffold_58-1491911889:416699..417390TCONS_00071087-exon-scaffold_58-1491911889:416699..417390Clytia hemisphaericaexon
TCONS_00071087-exon-scaffold_58-1510915933:416699..417390TCONS_00071087-exon-scaffold_58-1510915933:416699..417390Clytia hemisphaericaexon
TCONS_00071087-exon-scaffold_58-1575043694:416699..417390TCONS_00071087-exon-scaffold_58-1575043694:416699..417390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:416699..417390 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.317082	0.944638	0.108781	0	13.0268	9.30131	9.91257	10.8897	4.14851	8.01027	9.4446	6.6111	4.69622	6.09218	2.09039	1.99447	2.1834	1.95626	3.28364	4.11998	3.02561	2.25868	1.49884	1.49501	6.83784	5.8229	2.33777	2.72439	1.24561	2.78288
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top