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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071056 ID=TCONS_00071056|Name=TCONS_00071056|organism=Clytia hemisphaerica|type=transcript|length=2853bpRun BLAST on NCBI protein sequence of TCONS_00071056-protein >TCONS_00071056-protein ID=TCONS_00071056-protein|Name=TCONS_00071056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=701bp METGTEEYFWVQCEYPQCMKWRKLLSGVQDEIKNIQWYCHMNPDKAYSFCRun BLAST on NCBI transcript from alignment at scaffold_58:1350178..1357172- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071056 ID=TCONS_00071056|Name=TCONS_00071056|organism=Clytia hemisphaerica|type=transcript|length=6995bp|location=Sequence derived from alignment at scaffold_58:1350178..1357172- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:1350178..1357172- >TCONS_00071056 ID=TCONS_00071056|Name=TCONS_00071056|organism=Clytia hemisphaerica|type=CDS|length=27378bp|location=Sequence derived from alignment at scaffold_58:1350178..1357172- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071056 vs. Swiss-Prot (Human)
Match: ZCPW2 (Zinc finger CW-type PWWP domain protein 2 OS=Homo sapiens GN=ZCWPW2 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 5.711e-21 Identity = 62/181 (34.25%), Postives = 94/181 (51.93%), Query Frame = 2
Query: 47 WVQCEYPQCMKWRKLLSGVQDEIKNIQ-WYCHMNPDKAYSFC-----DAPQQKMQVKKGETVVFSELELGSLVMAKMAGYPSWPAIITKDPAEPEGSHIIRYQDGTNDPKYYHVEFLGQMHTHAWISARQVQIYNTSSGILVFDERAMXXXXXXXXXXXXXQEASTFMNFSPEERLKRIIF 571
WVQCE C+KWR L S ++ + + WYC MN D Y+ C D P++ + G +V+S+L LGSLV+ K+ +PSWP I+ P +G ++ DG + YH+EFLG H+ +WI A V Y+ + + K K K+ + + QEA +S E+RL+
Sbjct: 30 WVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEEDFPEESQLHQCGFKIVYSQLPLGSLVLVKLQNWPSWPGILC--PDRFKGKYVTYDPDGNVEE--YHIEFLGDPHSRSWIKATFVGHYSITL-------KPEKCKNKKKWYKSALQEACLLYGYSHEQRLEMCCL 199 The following BLAST results are available for this feature:
BLAST of TCONS_00071056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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