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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071045 ID=TCONS_00071045|Name=TCONS_00071045|organism=Clytia hemisphaerica|type=transcript|length=1711bp
TTGAGGTCGTGATTTATTTTGAcgggtttttgattttttatgtttttatc
gTTTGAAGGAATGCATGGATGATTCTTGGAGTGCTTTTTACAAGATCACA
AGAGTCGAGAAATATTGAAAAGACTGGTTGACTTTTGACTTTGatGTTCA
CTTCTACCCTCACTGAGTATTCTTATCATTGTATCAGCTCTCTTGGTGAG
TCCATGGACGGTCACTTTAAAAATCGTTGAAAACAAAGCTAATGGAATAG
AGACTTGTAATTCTTCATCAATGGAAGGTCTGTGGATGGGAAGGGTTTTG
AATTTCATATTTGAATGTTTGAACCTGACACGTGGTGTAGTAGCAGCAGT
AACCATAATCGTGCTCagccaaatgacgtcacaagcattGGAAAAGAATA
acgatttttataagaacaacccAGTCTTACGTTTACGCGTACAACACGTA
CGTCGCTTGTTACGTACTATCACAATAGCGTTCAGTATCTTAGTCATCCC
CGCGGATGCGTTTCACGTGATCTACCACACAATGACGTGGACGATGAAGC
TCACACCAGAAACGTTCGCCGTACTCCTCAATATTCACGTTCTGCTTAAA
CTTCTCCAATCTTCAAACAGCGCTTTTAATTTTATCATTTACGCCGGAAT
GAAAGGCGACGTCAACAACTTCTTACGTAAACTCAGCCGGCGTGTCGTGA
GTAGATCCAGATTCGTGGTAAACGTAACGGAGAAAAAGGGAGAGGAAAGA
ATACCGAGAAAACTAACCACTCTTTCGACTATATCTTCAACTGGGTGTTG
AACGCTCTAAATCCAAACTCAAACCCAGACCCTTAACTCGCTTTTTTATA
ATGAAGATTTATTGGATCAAGAAAATATAACAGTGAAATACTGCATTGTA
CCAAAAGTTACAGTGACTATTCCACTCAAAAATAGCTTGCATTGGTGAAG
TGAAAAATTAACTAACGAAATTAAGAGAGAATTATTTGTGCAATGTATTT
atattaaaattgattttaaatacTTTCACAAATAATCCTAGTTTGATATA
AATAATTCTAGATTTTTCTACTCTACGATAGATCTTATAGTCATTGTTGT
CTCTGACCGATCTCTCAAAGAGAAGCCATCTttccaacaacaaaacaatc
tctggaaaattttgaatttgaatcttTTAGAATATAACAACGGATTGATA
CTACATTGAGCGGCTTGCAGAGTCTTCAGAATAGTTAACGCGAATCTTAA
GTAGGAGTAAACCTCGTGGTTCATTTTAACTTCAGCAGTTCTTAACACGA
AATAAACACAATGGTATAAATCAATGGGAACGATGCAGATACAATACACC
AACACAATGGAATACAACAATTTTCGCGTGTTCTTCGTTCGCTCGATCAA
CTTTGGGTGAGCGGCGTAAAACTCTTTATTTTTGTTGAGCGCTTTGACGG
TAAGGCGACCGTACACAAAGATGTAAACACACGAAAATAAATCTCTAAGC
AACATTATGATGTCAAAAACGAAGTTCAAAACGAATCCTTTTCTTGAAGA
AGTTTGCGAGGTTGATGTACACGTGTTAAGACCTGACTTTTTGTTCTGTA
AAATATCCAACGTCATCGTCCATGGGATGGTTAAGATGATTGACATGATT
GCGGACGCAAGCAACCATGTGATGATGAAACGATTTGTTATTGGTTCTTC
TAAGGGTTTGC Run BLAST on NCBI transcript from alignment at scaffold_58:1240436..1243348- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071045 ID=TCONS_00071045|Name=TCONS_00071045|organism=Clytia hemisphaerica|type=transcript|length=2913bp|location=Sequence derived from alignment at scaffold_58:1240436..1243348- (Clytia hemisphaerica)
TTGAGGTCGTGATTTATTTTGACGGGTTTTTGATTTTTTATGTTTTTATC
GTTTGAAGGAATGCATGGATGATTCTTGGAGTGCTTTTTACAAGATCACA
AGAGTCGAGAAATATTGAAAAGACTGGTTGACTTTTGACTTTGGTACGTT
TGATTTTTTATTAGGGGGTAACTCAATATGATTTTTCTTGACTTTTAATA
ATTTTCTTAGGTTTAATTTGAAGAAATATTTACTCAAAATAGACAGCTTG
TTTACTCTCATGTAAACGCTATCAAAATTTAATTTCTTTCGAAAGAATTC
TTTCGGAGGATTGAAAATAGTGTAAAATCCCTTGTCTCTCACTCAACTCT
CACCAAACACAATCATGTTTTTTACAGACAAGATGTCACAAACCTACACA
CCTATCCAACTATTTGAACTGGTTGGTCTGGTTTTTATCTTTATTGTTGG
ACTAATTGGCAATTCACTCGTACTCTACGTCTTCTTGTCGAAGATACGAC
GCCGTGGAGTCAAGGCCAAACCTTTCGAGCTACTTCTCTCTATCCTAGCT
ATCGTGGACTTACTCTCGACTTTTTTCATGCCTGGACTTTTTATATACTT
CACGTCAGTTTATTGGAAGAAATGGCACTTCGGATACATCGGGTGTAAGA
TCTTGAGAAGTTTACCAGTCTTCTTGATCACTATTTCTCAAGGAATTCTC
ATTATCATTGCGTACCAAAGATATCGAATCGTTAAAGACCCTCTTCATAA
CAAACTGACAAGGTGAAAGCAAAAAAACTTTTGATTCCCTAAATCTTTAT
CCAATATTAAGGAGGCCTCCCAGTGGACCTTCAATTCACACAATCACGCA
AAATTTGTTCCCTAATTCTCACGCATTCACGCAATGTTTTTTCACAATTC
ACGCAATGTTTTTCACGCAAAGCTTTCCAATTCACGTTCATTCACGCAGT
TTTTTTTCTACTTTTCACGTATTCACGCAAGTGAAAAAGCCCATTCACGC
ATTCACGCAAACCGCTGGGTGGGGCATTAAGTACAATGTTTATCGTTCGA
TAATTTTGACTCTTGTTTAAGAAATCATGTATCGTAGGAGTTAAGTAAGC
GCTGGAAGAAAAATTGTCGGCGGGAGGGGCTTAAAGCACCTTCTCATCAA
ATTTTGCTCGTTCTCCTACGCACCTCCTATTTTAGAAAACATTCAACCGC
TCTTATCTCCCCCTCTTAAATTATCAATTTATAGACTAGCTTGTTTGTGA
CTAGTCAAGTGAGGCTTTAGGTTAAGGCTGTTGATAACAATTTAAAACTT
ATTCAAGCATTACTCTAATCTAAGTTTCGGATTCTTTTTCTTTAGATGTT
CACTTCTACCCTCACTGAGTATTCTTATCATTGTATCAGCTCTCTTGGTG
AGTCCATGGACGGTCACTTTAAAAATCGTTGAAAACAAAGCTAATGGAAT
AGAGACTTGTAATTCTTCATCAATGGAAGGTCTGTGGATGGGAAGGGTTT
TGAATTTCATATTTGAATGTTTGAACCTGACACGTGGTGTAGTAGCAGCA
GTAACCATAATCGTGCTCAGCCAAATGACGTCACAAGCATTGGAAAAGAA
TAACGATTTTTATAAGAACAACCCAGTCTTACGTTTACGCGTACAACACG
TACGTCGCTTGTTACGTACTATCACAATAGCGTTCAGTATCTTAGTCATC
CCCGCGGATGCGTTTCACGTGATCTACCACACAATGACGTGGACGATGAA
GCTCACACCAGAAACGTTCGCCGTACTCCTCAATATTCACGTTCTGCTTA
AACTTCTCCAATCTTCAAACAGCGCTTTTAATTTTATCATTTACGCCGGA
ATGAAAGGCGACGTCAACAACTTCTTACGTAAACTCAGCCGGCGTGTCGT
GAGTAGATCCAGATTCGTGGTAAACGTAACGGAGAAAAAGGGAGAGGAAA
GAATACCGAGAAAACTAACCACTCTTTCGACTATATCTTCAACTGGGTGT
TGAACGCTCTAAATCCAAACTCAAACCCAGACCCTTAACTCGCTTTTTTA
TAATGAAGATTTATTGGATCAAGAAAATATAACAGTGAAATACTGCATTG
TACCAAAAGTTACAGTGACTATTCCACTCAAAAATAGCTTGCATTGGTGA
AGTGAAAAATTAACTAACGAAATTAAGAGAGAATTATTTGTGCAATGTAT
TTATATTAAAATTGATTTTAAATACTTTCACAAATAATCCTAGTTTGATA
TAAATAATTCTAGATTTTTCTACTCTACGATAGATCTTATAGTCATTGTT
GTCTCTGACCGATCTCTCAAAGAGAAGCCATCTTTCCAACAACAAAACAA
TCTCTGGAAAATTTTGAATTTGAATCTTTTAGAATATAACAACGGATTGA
TACTACATTGAGCGGCTTGCAGAGTCTTCAGAATAGTTAACGCGAATCTT
AAGTAGGAGTAAACCTCGTGGTTCATTTTAACTTCAGCAGTTCTTAACAC
GAAATAAACACAATGGTATAAATCAATGGGAACGATGCAGATACAATACA
CCAACACAATGGAATACAACAATTTTCGCGTGTTCTTCGTTCGCTCGATC
AACTTTGGGTGAGCGGCGTAAAACTCTTTATTTTTGTTGAGCGCTTTGAC
GGTAAGGCGACCGTACACAAAGATGTAAACACACGAAAATAAATCTCTAA
GCAACATTATGATGTCAAAAACGAAGTTCAAAACGAATCCTTTTCTTGAA
GAAGTTTGCGAGGTTGATGTACACGTGTTAAGACCTGACTTTTTGTTCTG
TAAAATATCCAACGTCATCGTCCATGGGATGGTTAAGATGATTGACATGA
TTGCGGACGCAAGCAACCATGTGATGATGAAACGATTTGTTATTGGTTCT
TCTAAGGGTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071045-exon-scaffold_58-1575043694:1243206..1243348 | TCONS_00071045-exon-scaffold_58-1575043694:1243206..1243348 | Clytia hemisphaerica | exon |
| TCONS_00071045-exon-scaffold_58-1575043694:1240436..1242003 | TCONS_00071045-exon-scaffold_58-1575043694:1240436..1242003 | Clytia hemisphaerica | exon |
| TCONS_00071045-exon-scaffold_58-1510915933:1243206..1243348 | TCONS_00071045-exon-scaffold_58-1510915933:1243206..1243348 | Clytia hemisphaerica | exon |
| TCONS_00071045-exon-scaffold_58-1510915933:1240436..1242003 | TCONS_00071045-exon-scaffold_58-1510915933:1240436..1242003 | Clytia hemisphaerica | exon |
| TCONS_00071045-exon-scaffold_58-1491911889:1243206..1243348 | TCONS_00071045-exon-scaffold_58-1491911889:1243206..1243348 | Clytia hemisphaerica | exon |
| TCONS_00071045-exon-scaffold_58-1491911889:1240436..1242003 | TCONS_00071045-exon-scaffold_58-1491911889:1240436..1242003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1240436..1243348 - |
Blast
The following BLAST results are available for this feature:
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