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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071042 ID=TCONS_00071042|Name=TCONS_00071042|organism=Clytia hemisphaerica|type=transcript|length=1426bp
TACATCTGGAGAGGGTCTGCTCACTTTCTTAGCGACTGACATTTTGAACA
GTTGGAGGAAAGTCTCGCTCTGGGTGCTAAGTGGAAAATGaggttctttt
tgtttttcctaTCGATTGCACTTTGCAATGCTGTTAAATTCACAAAGGAA
GATATCCAGTTTTTTGGTTGTTACTCCAATAGCATGTATATAGAGTTAGC
AACTTACAAGATGGGGCTTCACGATCGAGAATTTCAAATACATTTCAAAG
GATACAAAGATGATGAGGAATGTTCTCTTGAGTCTGGCGAAGACTTCATT
AAGTACGAATACTTTTATTTGGGCCACTATTACAGTCATTGTGGTATTCA
ACAGACTAGACGAGGGAACAAAATCATTTACAGTCAAACCGTCATGCTGA
CATTCGGAAAAGATCCTGTCTCAAAGCTGGTTCATCGAACCGAACAAATT
GCGTTCGAATTCGAATGCGTTTTAGATGCTGATGCAAAAGTGAAGCTTCT
TGGACCTGGACACGTAAATGTCTCCAGTTTGGAGGAACAATCATTCGAGA
AAACGGACGTTGGCGAATTTGACATCAAATTGGTGCGAACAACTGACAAC
ACTTTTACTTCAGAAGATTCGACGTCGCAAATGAGACTTGGTGATCAAAT
GTACTTCAAACTCCACTTTGATACCGTCAGAGATGACCTGAAGATCGCAC
CCAAGACATGCTACGCTGCAAGTGCAAAGAATTCTTCGGAGAAATACATC
TTGGTTGAGGACGGTTGTCCAAACAAAGCAGATGGCACGGTTGAAGTGAC
CGACACCAACAACCAAAAGATCTTCGAATGGCAAAACGAGGCGTTCCGAT
TTTTCGGCGATTCCGATGCCGTCTACATCACTTGTGACGTCACTGTTTGC
AAAAGTTCCGACATGGCGGCTGAATGCAACCGATGTGACGTCAATAATAC
AAGACGACGTCGCGGTTTAACTTCGTCACATAAAGCGACATACTTGACGG
TCTCTAACGGCATCAAATACACGTTGTTGTTGTAACAGACGGATACAACA
TTCTTGGACGCTGAAACAGAGATTTGGTAAAATTCAACAGTGAATGGTAT
TAGGATTTTAGAAATTTCATGTATCACGAATAATAAGTTTAAGCTTGTAG
CTAACGATAAAAATGATCAAATCGAAGTACAgtggtaattttttttgtag
GATTGAACTCAAGTTCTTATTTTCATGTTTGTTGTTTTCAATTTACTTTT
GATCGTGGTTATTCTGTTCGAAACCTTTGCATGATGATAAAgtatgaaaa
gaaaatattttatagcTTCATTTTCTATGATCTGGAATTCTTGATAAACA
AtataaattatgtaaaaaaaCATATCCTTGCACTATTTACACAAAAGAAG
TGCTGCCTAAAAACCATGAACATGCT Run BLAST on NCBI protein sequence of TCONS_00071042-protein >TCONS_00071042-protein ID=TCONS_00071042-protein|Name=TCONS_00071042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MRFFLFFLSIALCNAVKFTKEDIQFFGCYSNSMYIELATYKMGLHDREFQ
IHFKGYKDDEECSLESGEDFIKYEYFYLGHYYSHCGIQQTRRGNKIIYSQ
TVMLTFGKDPVSKLVHRTEQIAFEFECVLDADAKVKLLGPGHVNVSSLEE
QSFEKTDVGEFDIKLVRTTDNTFTSEDSTSQMRLGDQMYFKLHFDTVRDD
LKIAPKTCYAASAKNSSEKYILVEDGCPNKADGTVEVTDTNNQKIFEWQN
EAFRFFGDSDAVYITCDVTVCKSSDMAAECNRCDVNNTRRRRGLTSSHKA
TYLTVSNGIKYTLLL Run BLAST on NCBI transcript from alignment at scaffold_58:1235251..1238878- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071042 ID=TCONS_00071042|Name=TCONS_00071042|organism=Clytia hemisphaerica|type=transcript|length=3628bp|location=Sequence derived from alignment at scaffold_58:1235251..1238878- (Clytia hemisphaerica)
TACATCTGGAGAGGGTCTGCTCACTTTCTTAGCGACTGACATTTTGAACA
GTTGGAGGAAAGTCTCGCTCTGGGTGCTAAGTGGAAAATGAGGTTCTTTT
TGTTTTTCCTATCGATTGCACTTTGCAATGCTGTTAAATTCACAAAGGAA
GGTAAGTGGTTTACTGCCTTGTTGTCAAATTTGACAAATAATTTACGCCC
CTGTCTCAGTGACCCGGGGAGAAATTTCACACATTAAGGATCGAGAATTT
AAATCCTTTTGCTTTTAATGAGTGGGATTTTAAAACCCTAAATGAAATCT
ACTGGGGATGACTTGTAGAGTTTTCTTTCAGGTAGAGAAGGGAGTGACTA
TTGAGTCTGTGACACAAAGTCCCTACACTTTCATCCATTTTGAGCCAATG
AAGAACGAGATGGAAAGGAAGGAAGGAAGGAAGCATAATGACTATAATTG
AAATGACACTGATTCTGTTTATTTTATCTAATAGATATCCAGTTTTTTGG
TTGTTACTCCAATAGCATGTATATAGAGTTAGCAACTTACAAGATGGGGC
TTCACGATCGAGAATTTCAAATACATTTCAAAGGATACAAAGATGATGAG
GAATGTTCTCTTGAGTCTGGCGAAGACTTCATTAAGTACGAATACTTTTA
TTTGGGCCACTATTACAGTCATTGTGGTATTCAACAGACTAGACGAGGGA
ACAAAATCATTTACAGTCAAACCGTCATGCTGACATTCGGAAAAGATCCT
GTCTCAAAGCTGGTTCATCGAACCGAACAAATTGCGTTCGAATTCGAATG
CGTTTTAGATGCTGATGCAAAAGTGAAGCTTCTTGGACCTGGACACGTAA
ATGTCTCCAGTTTGGAGGAACAATCATTCGAGAAAAGTAGGGTTTATATG
ATGACAATTCTTTTTTTACCAATTTTAAACTATTCAACAACATATAGACA
TTTAAGCAATGTTATGAAAACATAGGGCTAAAATTTTGCAACAAAAAAAA
AGAAGAAGTATAAGGACAAATTGTGGACAACTCCGATTTTACAGAAAGTA
CAAACAGTCGGGACCACTACATGAAAAAGGCAACTATTGCCTTAACGGGA
AGAATTTGCCGAACGGGAAGGTGAAAATAACCCGAAAAGGAAACTGTTTC
CAGATTGAAAATTTCATCACTTTTCTGTTTTCCGTTTTGGTCAAGAACTT
TTCATCATCCCCGAACGGGATATAGAATTTTTGTAAAAAAGCAGATCTTT
ATTTCCTGATCGAGAAAAAGTTTCCAAATAGGGAAATCTTTAATTGGGAA
TAGGGAAAGTGGAATTAAGAAGTGATTACCCGGTGGATTTCTTAACTACC
TGGTGAATATTATTTATTTTCCTTCCTTTACAAGAGGGACAAGTTTTAAA
CTTTCAACAGGAATTTCCGGAGTGCTCAGAGGCCACTTTCCCGATTGGGA
AACTGGTGAACTTCCCGATTTGGAAAGTCTAGTCATTTCGGGAATTTTTC
CACCTTCCCGTTCGGGAAATATTTCCCGTTAAGGCAATAGTTGCCTTTTC
CATGTAGTGGTTTCCGACTGACAAAGAAAACATGATAAGCAAAAGATTTG
AAATTCAAAATAAGATCGGCAACAGCCTGATAAACACAGAATAAAAACTA
ATTCTCAATTCTAAAAGAAATTGTTTATTCTGCTAAGCTTCGAATGAACT
TTTGAGTGACTGAACAAACAGTTCACAGGATGGTGGATGAAGACAATGAT
GCTAAAAGGATTTTTTGCCATAAAAGCCAGTGTGCGATATTTTATTGCGC
TGGTTAATCGAGACGGAATATCTTATGACAAACATGACTTCTAGAAATTC
TTTCTCATTTCAAGACTATTGTTCTTCTTACTGCGACGGAAATGCTGTTA
GAAAACACAACTGGACGCGAATTTTGGTATACAGACGAAAAAGTTGTAAC
ACTGACTGTTCTAAGGTCTTCCAATTAGGTTTCCACTCAACTCCAAGCAC
AGAAAGTCACTAAACAGAAACTTTCTTTCTCCTTTAGCGGACGTTGGCGA
ATTTGACATCAAATTGGTGCGAACAACTGACAACACTTTTACTTCAGAAG
ATTCGACGTCGCAAATGAGACTTGGTGATCAAATGTACTTCAAACTCCAC
TTTGATACCGTCAGAGATGACCTGAAGATCGCACCCAAGACATGCTACGC
TGCAAGTGCAAAGAATTCTTCGGAGAAATACATCTTGGTTGAGGACGGGT
GAGCCACTAATCATTTGACTGGTTTAAGTACCAGAACTACGTGTGCATTT
CCCGCCATTCGCCAAATTAAACTCACGCAAAATTTAAGTCATGAAATTTC
CGAATTATAGGGCTATTTCAGTATTTTTGCCCAAAATATCCTGCAGCATC
AAAATTGATTTCCTAATGAAGTACTAAGAGAAGAGTACATTATACACCCC
CCTCAAATAGACCCACCGAGACTACTTCCCACTGGGAAAATTAGCCAAAA
TATCGTCCCCAGTGGAAAATATCCTCCGATTTTTGTCCCCACTGAAAGTA
ATCAAACAAACTAATCCTCCTTGCAAAATATTACCCTATTTCTCCCATTC
CAACTGAATTTTCTGATTTGAAAACAATGAGTTCAAATCCCCAGCCATAA
ATCAATCCTCATCGAGTTTTAGTCCGTTAATTCCACTGGCTGAAAAGTAC
CTACCAGGTCTGTGAGAAAGGGATATGTTATACAAAAGGCGACAAAAGGG
ATAAATCAATGCATACTTCAAAAAATATTATAGTAAAATGCACCAGGCGT
AACAAACCAATCAGTTTTCTATCGATCAAGTTTGAACAAAATAATCATTC
GATTAATCGAACATGATTGTATGTGGTTTAACTGAATTTAGATAGAAAGG
GAAAATTCAATTGGTTACGTCATGAACACAATGCGTCATTCATTGATTTA
CTTACATTTTTCATAGTTGTCCAAACAAAGCAGATGGCACGGTTGAAGTG
ACCGACACCAACAACCAAAAGATCTTCGAATGGCAAAACGAGGCGTTCCG
ATTTTTCGGCGATTCCGATGCCGTCTACATCACTTGTGACGTCACTGTTT
GCAAAAGTTCCGACATGGCGGCTGAATGCAACCGATGTGACGTCAATAAT
ACAAGACGACGTCGCGGTTTAACTTCGTCACATAAAGCGACATACTTGAC
GGTCTCTAACGGCATCAAATACACGTTGTTGTTGTAACAGACGGATACAA
CATTCTTGGACGCTGAAACAGAGATTTGGTAAAATTCAACAGTGAATGGT
ATTAGGATTTTAGAAATTTCATGTATCACGAATAATAAGTTTAAGCTTGT
AGCTAACGATAAAAATGATCAAATCGAAGTACAGTGGTAATTTTTTTTGT
AGGATTGAACTCAAGTTCTTATTTTCATGTTTGTTGTTTTCAATTTACTT
TTGATCGTGGTTATTCTGTTCGAAACCTTTGCATGATGATAAAGTATGAA
AAGAAAATATTTTATAGCTTCATTTTCTATGATCTGGAATTCTTGATAAA
CAATATAAATTATGTAAAAAAACATATCCTTGCACTATTTACACAAAAGA
AGTGCTGCCTAAAAACCATGAACATGCT Coding sequence (CDS) from alignment at scaffold_58:1235251..1238878- >TCONS_00071042 ID=TCONS_00071042|Name=TCONS_00071042|organism=Clytia hemisphaerica|type=CDS|length=3792bp|location=Sequence derived from alignment at scaffold_58:1235251..1238878- (Clytia hemisphaerica)
TTGTCCAAACAAAGCAGATGGCACGGTTGAAGTGACCGACACCAACAACC
AAAAGATCTTCGAATGGCAAAACGAGGCGTTCCGATTTTTCGGCGATTCC
GATGCCGTCTACATCACTTGTGACGTCACTGTTTGCAAAAGTTCCGACAT
GGCGGCTGAATGCAACCGATGTGACGTCAATAATACAAGACGACGTCGCG
GTTTAACTTCGTCACATAAAGCGACATACTTGACGGTCTCTAACGGCATC
AAATACACGTTGTTGTTGTAACGGACGTTGGCGAATTTGACATCAAATTG
GTGCGAACAACTGACAACACTTTTACTTCAGAAGATTCGACGTCGCAAAT
GAGACTTGGTGATCAAATGTACTTCAAACTCCACTTTGATACCGTCAGAG
ATGACCTGAAGATCGCACCCAAGACATGCTACGCTGCAAGTGCAAAGAAT
TCTTCGGAGAAATACATCTTGGTTGAGGACGGATATCCAGTTTTTTGGTT
GTTACTCCAATAGCATGTATATAGAGTTAGCAACTTACAAGATGGGGCTT
CACGATCGAGAATTTCAAATACATTTCAAAGGATACAAAGATGATGAGGA
ATGTTCTCTTGAGTCTGGCGAAGACTTCATTAAGTACGAATACTTTTATT
TGGGCCACTATTACAGTCATTGTGGTATTCAACAGACTAGACGAGGGAAC
AAAATCATTTACAGTCAAACCGTCATGCTGACATTCGGAAAAGATCCTGT
CTCAAAGCTGGTTCATCGAACCGAACAAATTGCGTTCGAATTCGAATGCG
TTTTAGATGCTGATGCAAAAGTGAAGCTTCTTGGACCTGGACACGTAAAT
GTCTCCAGTTTGGAGGAACAATCATTCGAGAAAAATGAGGTTCTTTTTGT
TTTTCCTATCGATTGCACTTTGCAATGCTGTTAAATTCACAAAGGAAGTT
GTCCAAACAAAGCAGATGGCACGGTTGAAGTGACCGACACCAACAACCAA
AAGATCTTCGAATGGCAAAACGAGGCGTTCCGATTTTTCGGCGATTCCGA
TGCCGTCTACATCACTTGTGACGTCACTGTTTGCAAAAGTTCCGACATGG
CGGCTGAATGCAACCGATGTGACGTCAATAATACAAGACGACGTCGCGGT
TTAACTTCGTCACATAAAGCGACATACTTGACGGTCTCTAACGGCATCAA
ATACACGTTGTTGTTGTAACGGACGTTGGCGAATTTGACATCAAATTGGT
GCGAACAACTGACAACACTTTTACTTCAGAAGATTCGACGTCGCAAATGA
GACTTGGTGATCAAATGTACTTCAAACTCCACTTTGATACCGTCAGAGAT
GACCTGAAGATCGCACCCAAGACATGCTACGCTGCAAGTGCAAAGAATTC
TTCGGAGAAATACATCTTGGTTGAGGACGGATATCCAGTTTTTTGGTTGT
TACTCCAATAGCATGTATATAGAGTTAGCAACTTACAAGATGGGGCTTCA
CGATCGAGAATTTCAAATACATTTCAAAGGATACAAAGATGATGAGGAAT
GTTCTCTTGAGTCTGGCGAAGACTTCATTAAGTACGAATACTTTTATTTG
GGCCACTATTACAGTCATTGTGGTATTCAACAGACTAGACGAGGGAACAA
AATCATTTACAGTCAAACCGTCATGCTGACATTCGGAAAAGATCCTGTCT
CAAAGCTGGTTCATCGAACCGAACAAATTGCGTTCGAATTCGAATGCGTT
TTAGATGCTGATGCAAAAGTGAAGCTTCTTGGACCTGGACACGTAAATGT
CTCCAGTTTGGAGGAACAATCATTCGAGAAAAATGAGGTTCTTTTTGTTT
TTCCTATCGATTGCACTTTGCAATGCTGTTAAATTCACAAAGGAAGTTGT
CCAAACAAAGCAGATGGCACGGTTGAAGTGACCGACACCAACAACCAAAA
GATCTTCGAATGGCAAAACGAGGCGTTCCGATTTTTCGGCGATTCCGATG
CCGTCTACATCACTTGTGACGTCACTGTTTGCAAAAGTTCCGACATGGCG
GCTGAATGCAACCGATGTGACGTCAATAATACAAGACGACGTCGCGGTTT
AACTTCGTCACATAAAGCGACATACTTGACGGTCTCTAACGGCATCAAAT
ACACGTTGTTGTTGTAACGGACGTTGGCGAATTTGACATCAAATTGGTGC
GAACAACTGACAACACTTTTACTTCAGAAGATTCGACGTCGCAAATGAGA
CTTGGTGATCAAATGTACTTCAAACTCCACTTTGATACCGTCAGAGATGA
CCTGAAGATCGCACCCAAGACATGCTACGCTGCAAGTGCAAAGAATTCTT
CGGAGAAATACATCTTGGTTGAGGACGGATATCCAGTTTTTTGGTTGTTA
CTCCAATAGCATGTATATAGAGTTAGCAACTTACAAGATGGGGCTTCACG
ATCGAGAATTTCAAATACATTTCAAAGGATACAAAGATGATGAGGAATGT
TCTCTTGAGTCTGGCGAAGACTTCATTAAGTACGAATACTTTTATTTGGG
CCACTATTACAGTCATTGTGGTATTCAACAGACTAGACGAGGGAACAAAA
TCATTTACAGTCAAACCGTCATGCTGACATTCGGAAAAGATCCTGTCTCA
AAGCTGGTTCATCGAACCGAACAAATTGCGTTCGAATTCGAATGCGTTTT
AGATGCTGATGCAAAAGTGAAGCTTCTTGGACCTGGACACGTAAATGTCT
CCAGTTTGGAGGAACAATCATTCGAGAAAAATGAGGTTCTTTTTGTTTTT
CCTATCGATTGCACTTTGCAATGCTGTTAAATTCACAAAGGAAGTTGTCC
AAACAAAGCAGATGGCACGGTTGAAGTGACCGACACCAACAACCAAAAGA
TCTTCGAATGGCAAAACGAGGCGTTCCGATTTTTCGGCGATTCCGATGCC
GTCTACATCACTTGTGACGTCACTGTTTGCAAAAGTTCCGACATGGCGGC
TGAATGCAACCGATGTGACGTCAATAATACAAGACGACGTCGCGGTTTAA
CTTCGTCACATAAAGCGACATACTTGACGGTCTCTAACGGCATCAAATAC
ACGTTGTTGTTGTAACGGACGTTGGCGAATTTGACATCAAATTGGTGCGA
ACAACTGACAACACTTTTACTTCAGAAGATTCGACGTCGCAAATGAGACT
TGGTGATCAAATGTACTTCAAACTCCACTTTGATACCGTCAGAGATGACC
TGAAGATCGCACCCAAGACATGCTACGCTGCAAGTGCAAAGAATTCTTCG
GAGAAATACATCTTGGTTGAGGACGGATATCCAGTTTTTTGGTTGTTACT
CCAATAGCATGTATATAGAGTTAGCAACTTACAAGATGGGGCTTCACGAT
CGAGAATTTCAAATACATTTCAAAGGATACAAAGATGATGAGGAATGTTC
TCTTGAGTCTGGCGAAGACTTCATTAAGTACGAATACTTTTATTTGGGCC
ACTATTACAGTCATTGTGGTATTCAACAGACTAGACGAGGGAACAAAATC
ATTTACAGTCAAACCGTCATGCTGACATTCGGAAAAGATCCTGTCTCAAA
GCTGGTTCATCGAACCGAACAAATTGCGTTCGAATTCGAATGCGTTTTAG
ATGCTGATGCAAAAGTGAAGCTTCTTGGACCTGGACACGTAAATGTCTCC
AGTTTGGAGGAACAATCATTCGAGAAAAATGAGGTTCTTTTTGTTTTTCC
TATCGATTGCACTTTGCAATGCTGTTAAATTCACAAAGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071042-exon-scaffold_58-1575043694:1238728..1238878 | TCONS_00071042-exon-scaffold_58-1575043694:1238728..1238878 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1575043694:1237993..1238394 | TCONS_00071042-exon-scaffold_58-1575043694:1237993..1238394 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1575043694:1236631..1236841 | TCONS_00071042-exon-scaffold_58-1575043694:1236631..1236841 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1575043694:1235251..1235912 | TCONS_00071042-exon-scaffold_58-1575043694:1235251..1235912 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1510915933:1238728..1238878 | TCONS_00071042-exon-scaffold_58-1510915933:1238728..1238878 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1510915933:1237993..1238394 | TCONS_00071042-exon-scaffold_58-1510915933:1237993..1238394 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1510915933:1236631..1236841 | TCONS_00071042-exon-scaffold_58-1510915933:1236631..1236841 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1510915933:1235251..1235912 | TCONS_00071042-exon-scaffold_58-1510915933:1235251..1235912 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1491911889:1238728..1238878 | TCONS_00071042-exon-scaffold_58-1491911889:1238728..1238878 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1491911889:1237993..1238394 | TCONS_00071042-exon-scaffold_58-1491911889:1237993..1238394 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1491911889:1236631..1236841 | TCONS_00071042-exon-scaffold_58-1491911889:1236631..1236841 | Clytia hemisphaerica | exon |
| TCONS_00071042-exon-scaffold_58-1491911889:1235251..1235912 | TCONS_00071042-exon-scaffold_58-1491911889:1235251..1235912 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1235251..1238878 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR001507 | ZP_dom |
Blast
The following BLAST results are available for this feature:
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