TCONS_00071041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071041
Unique NameTCONS_00071041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071041 ID=TCONS_00071041|Name=TCONS_00071041|organism=Clytia hemisphaerica|type=transcript|length=1741bp
AAACGTTCAAAGAAACACAAAGGTTGAAGTTAAACACTTTGGGATATCAT
GTGTAGAAACAGAAATTCGTTATGATGGTCGGATCCGGAGAAAAAACGGC
TCCcttttttgccttgaaaaagaACGGGAAATCAACCCCTACAAACCAAG
ACCCTCCTAACAGTGCTCACAGATATGTCGACAAATTTTCTTTAATAACG
CGTTCCGATTCGATCCAACATCGTAAAAAGAATAaatcaaaaaagctaaa
aacgGACACTTTTCAACGCAACCCATTACACATGTGACACAATATATTAT
GTAAGAACAAGACAGAGTATACATCTTTGTTAAAGCTTTGGAAACAGGAC
CCTAAAGTAGAGATGTCGTCAATTTGCGagagagaaaaaagataactgtc
aatttttgtttttagttttgttgCTGCTTgtcatattttaatttttttgt
catgtAAATAaggataataataataatactttATAATCTATTTATATTTA
CATATATATCATAATATTTCCATATCTTATAGAATTAATCTGAAGCTTCT
GTTAAAAATTATTCCTCgataaacaaaaacattccATCGAAGATTCAGGT
TGAAGAGTTTTTGTTCAAGAAAGTCGATAATTAGAAGAAAAGAAGGGTTA
AAAAATTGTTCCATTGTTGTTATGCATTCTTATGCCTTGAATTTCGTATA
CAAGGCGAACACGCGCATTCCGTTGCGCTTAAAAGTTTCACACTTCGCAT
TTCGTCTTCCTGAGTATCAGGATTTTGACACAACACTTTCGTGAAAACAG
TAATATCTTTGGTAGGAGTACAACAATTACATTTTGGAATTATACCATGC
TCAGAATGCAAGTCAATAGTTGTATCTGATTTACAATAACCTGCACACCC
CAACACTTTGACGACAGTGGGTTGACAGTTTGGTAAGCGAATGGGTACTG
TCACAATATTTAGTTTACAATTTTCTTCGCCAAATAAGAAGTCGCGAGTA
GGACGACACCAAGAGATATCCATTAATAAGAATAGTAGAATAAACACGAT
GGAGAGATGTTCCAGTAACTTCCAGTTCTTAGGTAACATTTTGTGAACGA
CCATTACTCTTTCAACACACCAGcaaacattcaaaacaaaacgCACTGTC
TCTACTGCTTGTCTATCAAACAAAGTATAATCAATgacaaagtttctctc
tttttatttgaaacaatcttttcttttttattatgtaGCAAGATATTGTC
TTTTCCGTTCTTAATTACCCGTCACTGAGCAAATTGTCACAAAATTGTTT
TCAGAGGTCGTCCaactgatgatgatgataataatCCACGCGCAAAACGA
ACAACTGTTCacaaaagccaaaatttggttggtcCTCCACGAAAGAACAA
TAGATAGTCGCAAACTACCCAATTATTTCGCTTTATTAGCAATCAATCAA
ACAAGCTGCCCTTCAAATACAAAATGGCCACGATTTGCTACTTCGTTAAT
CTTTTTCAATGACCCGCTATTAACGTCCATAAGCTTCTTTCTTCTCTTCG
CCACCGCTCGATTTGTGAAGCGCGAAAATCGTTCACCTCGCCAACCGATA
AAATAACAACAAattaaagatttccaggtaaaATCCTTTGTTTCCTTCTT
TTATCactttctaaaaaagaaaaaaaggaaaagattaAGTCGTAGTAATA
AATCACAAAATTCGCAACAGTAAATTAACTTTCGAGTGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_58:1217696..1221646-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071041 ID=TCONS_00071041|Name=TCONS_00071041|organism=Clytia hemisphaerica|type=transcript|length=3951bp|location=Sequence derived from alignment at scaffold_58:1217696..1221646- (Clytia hemisphaerica)
AAACGTTCAAAGAAACACAAAGGTTGAAGTTAAACACTTTGGGATATCAT
GTGTAGAAACAGAAATTCGTTATGATGGTCGGATCCGGAGAAAAAACGGC
TCCCTTTTTTGCCTTGAAAAAGAACGGGAAATCAACCCCTACAAACCAAG
ACCCTCCTAACAGTGCTCACAGATATGTCGACAAATTTTCTTTAATAACG
CGTTCCGATTCGATCCAACATCGTAAAAAGAATAAATCAAAAAAGCTAAA
AACGGACACTTTTCAACGCAACCCATTACACATGTGACACAATATATTAT
GTAAGAACAAGACAGAGTATACANNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATCTTTGTTAAAGCTTTG
GAAACAGGACCCTAAAGTAGAGATGTCGTCAATTTGCGAGAGAGAAAAAA
GATAACTGTCAATTTTTGTTTTTAGTTTTGTTGCTGCTTGTCATATTTTA
ATTTTTTTGTCATGTAAATAAGGATAATAATAATAATACTTTATAATCTA
TTTATATTTACATATATATCATAATATTTCCATATCTTATAGAATTAATC
TGAAGCTTCTGTTAAAAATTATTCCTCGATAAACAAAAACATTCCATCGA
AGATTCAGGTTGAAGAGTTTTTGTTCAAGAAAGTCGATAATTAGAAGAAA
AGAAGGGTTAAAAAATTGTTCCATTGTTGTTATGCATTCTTATGCCTTGA
ATTTCGTATACAAGGCGAACACGCGCATTCCGTTGCGCTTAAAAGTTTCA
CACTTCGCATTTCGTCTTCCTGAGTATCAGGATTTTGACACAACACTTTC
GTGAAAACAGTAATATCTTTGGTAGGAGTACAACAATTACATTTTGGAAT
TATACCATGCTCAGAATGCAAGTCAATAGTTGTATCTGATTTACAATAAC
CTGCACACCCCAACACTTTGACGACAGTGGGTTGACAGTTTGGTAAGCGA
ATGGGTACTGTCACAATATTTAGTTTACAATTTTCTTCGCCAAATAAGAA
GTCGCGAGTAGGACGACACCAAGAGATATCCATTAATAAGAATAGTAGAA
TAAACACGATGGAGAGATGTTCCAGTAACTTCCAGTTCTTAGGTAACATT
TTGTGAACGACCATTACTCTTTCAACACACCAGCAAACATTCAAAACAAA
ACGCACTGTCTCTACTGCTTGTCTATCAAACAAAGTATAATCAATGACAA
AGTTTCTCTCTTTTTATTTGAAACAATCTTTTCTTTTTTATTATGTAGCA
AGATATTGTCTTTTCCGTTCTTAATTACCCGTCACTGAGCAAATTGTCAC
AAAATTGTTTTCAGAGGTCGTCCAACTGATGATGATGATAATAATCCACG
CGCAAAACGAACAACTGTTCACAAAAGCCAAAATTTGGTTGGTCCTCCAC
GAAAGAACAATAGATAGTCGCAAACTACCCAATTATTTCGCTTTATTAGC
AATCAATCAAACAAGCTGCCCTTCAAATACAAAATGGCCACGATTTGCTA
CTTCGTTAATCTTTTTCAATGACCCGCTATTAACGTCCATAAGCTTCTTT
CTTCTCTTCGCCACCGCTCGATTTGTGAAGCGCGAAAATCGTTCACCTCG
CCAACCGATAAAATAACAACAAATTAAAGATTTCCAGGTAAAATCCTTTG
TTTCCTTCTTTTATCACTTTCTAAAAAAGAAAAAAAGGAAAAGATTAAGT
CGTAGTAATAAATCACAAAATTCGCAACAGTAAATTAACTTTCGAGTGTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044138XLOC_044138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071041-exon-scaffold_58-1575043694:1221325..1221646TCONS_00071041-exon-scaffold_58-1575043694:1221325..1221646Clytia hemisphaericaexon
TCONS_00071041-exon-scaffold_58-1575043694:1217696..1219114TCONS_00071041-exon-scaffold_58-1575043694:1217696..1219114Clytia hemisphaericaexon
TCONS_00071041-exon-scaffold_58-1510915933:1221325..1221646TCONS_00071041-exon-scaffold_58-1510915933:1221325..1221646Clytia hemisphaericaexon
TCONS_00071041-exon-scaffold_58-1510915933:1217696..1219114TCONS_00071041-exon-scaffold_58-1510915933:1217696..1219114Clytia hemisphaericaexon
TCONS_00071041-exon-scaffold_58-1491911889:1221325..1221646TCONS_00071041-exon-scaffold_58-1491911889:1221325..1221646Clytia hemisphaericaexon
TCONS_00071041-exon-scaffold_58-1491911889:1217696..1219114TCONS_00071041-exon-scaffold_58-1491911889:1217696..1219114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1217696..1221646 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.155	15.9966	0.047199	0	1.53985	0.0402073	0.117957	0	0	0	0	0	4.17861	3.12657	0	0.0504548	0.268059	2.89634	13.475	12.1975	5.02472	6.63075	32.8588	28.821	3.72951	3.89122	28.93	20.9486	31.0593	32.2587
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004133DAN
IPR029034Cystine-knot_cytokine
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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