TCONS_00071019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071019
Unique NameTCONS_00071019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071019 ID=TCONS_00071019|Name=TCONS_00071019|organism=Clytia hemisphaerica|type=transcript|length=2508bp
acagaaaaaaaaacaaaagataaataaataaacaaaaacacaTTGACGGC
CACCCTTAGGGGTGAAGAACCACAACTACTATGGATCCATTCAAAAAACT
TGCCCTTTTGAAGGCCAAAATGACCGGCATGAGTAGGGCCCAGATTGCGG
AAGCCATCCGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCA
GACCTTACTACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGC
TGCAGGTGGTTTTTCCTACACTATAGATAATATAACCAGACTGAAAAGAT
ATCTGATCTTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAgca
gaaaatattcaaaatattccaGTTGTTGAAGAACTTTTAAAGGAGGGTAA
AGGAAAGGAGGTGATTGATTTGATCGTTCAGTTTGCTCGTGAAGCACGTA
TCTCAAAAGAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTAT
CAGGGAGATGCCATGTATGAAGATAGGACCATACAACGAGCTGCTTATGA
CAGTATCGTCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGG
AGCTTTGTAAACCATGTTATCAAAATAATTGGAAGCCTTTAACCAAGCCA
GTCAGTAAGACGCAACTTCGGAAGAAAGCAAAACAAGAGGCAAAACAAGC
AGCTCAACAGCAGAATCAAAGGCCTTCCACCTCCACCGAAATCCCAGCTG
CTCAACCACCGTCAGCAAAAGTGCCAGTTGAAACAtgtgaaattgttgaa
gagggTGAACctccaaagaaaaagaaaaagaagatgaagaagaagaaaaa
accaaAGGAACCCAAACCTCAAACAacgcaaaaattcaaaaaatcttcaA
GTTGGGGACGTGCTAGACGGCGTGGTGTCGGCAATTTTTACACCGATTCA
AGTAAAGATGCCAATCGATTGTTATTGTTGATGACGAAGTACAAACAACG
TCATAATTGGAACCATGTTCAAACGTTGGGTTATTGTCATCCAAAAATGA
CGGGAGACGaggaacaagttaaaaacatcgtCCTCCAGTATTGCACACGT
GGCAAAGAAAAGTTGGACAAATATCTGGTCAAGAAAAAAATCGATGGGAA
TCAACCAATGGACCCAATCACATCTCAAATATTACAACACATAAAAGTTC
TTGAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCGATGTGGAGAGA
TTGCTGCAATTGTTGCACCAATACGGTATTCGGGAGGTGCCACAAGAATT
TGAGGTTGACGCTGCAGGTCAAATGGTACAAGTGGAAAACACTCAAcgta
aaaaatgttcttttcaaCTGACCAGGGAGCATTTACCAAATGGCTTCCAA
AAATTGAAGGAGGTTTGGGTGGCTCTACTTCAAGACATGCCCATGACAGC
CATGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCTCTTTGATGAAT
CAGCAAACAGAGAAATTGTCAAGAAGGTTTTAGGGGATGGCTCTATTTTG
AACAAAGCAAGAATTCACCCAGTCAAGATTCTGTTAGCATCAAAGATGTA
TGAGCAAGGCAATGGTGATCAAGGGCAAAgccatcaacaacaacaaaaaa
atcaaacaatgaGTCAATCAACCAAAGAACCACTTACTTGGAGACCAAAC
GCTGAAATCTCCAAAGCTCTCAATGATGCTTTCTACTTAAGTTTCAGACA
ACCCGGCAAGAATTCTTCATTCCGTACGGACAAAAAGTTCATGTTAAATC
TAGATGTTAGTGACTCTATGGATTGGGGTAACTGTGTAGGGTGTGATTTC
CTGACGCCCGCTGCCGCCTCTTTCGCCCTGGCCATGATTACGATGAATGT
TGAGCCACATTGTAGTGTGTTCGCTTTCGGGGGAACGCTTCAAAATATCG
ATCATTTATTGAAGAAGGATATGACCATCCTTGAAGCCATTCAAGTGGGA
CGCTCTCTCAATTTCGGTGCAACAGACTGTGCTCTACCAATGGTGCACGC
CACGCAGAACAGGCTGGATGTGGACGTTTTCATCGTTTACACTGACTCCG
AAACTTGGATTGGAAAAGTTCATCCTTCTGAAGCTTTAAAGAATTATCGG
CAAAAGATGAACAAACCGGATGCCAAACTCATCGTCATGGCAATGAAGGT
GAATGATTTCACGATCGCCGATCGACTCGATCGCGGTATGTTTGACATTT
GCGGATTCGATTCTAACGTACCTGATATGATCTGCGAGATCGCCAGAGGA
AACATTTCTTAAAATCACCAAACAAAGAGAAATGAAATCTAAACTTTTCT
GGTTAGCCTTCGTTTACATGGCTCTAGCTGCTTGTGAATTTGGTGCTGGT
GGTCTTAACATTCTATCAGGAAAAACGGAATTGATACATTATCAACCAGC
AAAGAGAACGACCAACCTTGACTTATTGCAGGGTTCTTGGATTACTGGAC
AGGTGGGT
Run BLAST on NCBI

transcript from alignment at scaffold_58:1028917..1036772-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071019 ID=TCONS_00071019|Name=TCONS_00071019|organism=Clytia hemisphaerica|type=transcript|length=7856bp|location=Sequence derived from alignment at scaffold_58:1028917..1036772- (Clytia hemisphaerica)
ACAGAAAAAAAAACAAAAGATAAATAAATAAACAAAAACACATTGACGGC CACCCTTAGGGGTGAAGAACCACAACTACTATGGATCCATTCAAAAAACT TGCCCTTTTGAAGGCCAAAATGACCGGCATGAGTAGGGCCCAGATTGCGG AAGCCATCCGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCA GACCTTACTACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGC TGCAGGTGGTTTTTCCTACACTATAGATAATATAACCAGACTGAAAAGAT ATCTGATCTTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAGCA GAAAATATTCAAAATATTCCAGTTGTTGAAGAACTTTTAAAGGAGGGTAA AGGAAAGGAGGTGATTGATTTGATCGTTCAGTTTGCTCGTGAAGCACGTA TCTCAAAAGAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTAT CAGGGAGATGCCATGTATGAAGATAGGACCATACAACGAGCTGCTTATGA CAGTATCGTCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGG AGCTTTGTAAACCATGTTATCAAAATAATTGGAAGCCTTTAACCAAGCCA GTCAGTAAGACGCAACTTCGGAAGAAAGCAAAACAAGAGGCAAAACAAGC AGCTCAACAGCAGAATCAAAGGCCTTCCACCTCCACCGAAATCCCAGCTG CTCAACCACCGTCAGCAAAAGTGCCAGTTGAAACATGTGAAATTGTTGAA GAGGGTGAACCTCCAAAGAAAAAGAAAAAGAAGATGAAGAAGAAGAAAAA ACCAAAGGAACCCAAACCTCAAACAACGCAAAAATTCAAAAAATCTTCAA GTTGGGGACGTGCTAGACGGCGTGGTGTCGGCAATTTTTACACCGATTCA AGTAAAGATGCCAATCGATTGTTATTGTTGATGACGAAGTACAAACAACG TCATAATTGGAACCATGTTCAAACGTTGGGTTATTGTCATCCAAAAATGA CGGGAGACGAGGAACAAGTTAAAAACATCGTCCTCCAGTATTGCACACGT GGCAAAGAAAAGTTGGACAAATATCTGGTCAAGAAAAAAATCGATGGGGT AACGATATTTCATTCTTTTCTATTTCATTTTTTAAAAATTTGTAAGAAGA GATGTGATAATTTCATCACTGTCTGTGTAGTGTAGGGAAAAGTTTTCCCA AATCTCCAATTCTTTACTTACACAACATTTAAACAAAAGAAAGAACAACC CCATTTTCAGAGCTGCGCGAGCACAAATTTTGAGAAATTCTTTTGTTTGT TATACTTTTTCCGCAAAGAGGCTTCTTATTAAAAAAGAAGATCCTTAATA TTTCCACTACCGTCCCTGCGCACTTCCGGGAGGTAATCGAAAAAGGTTGA ATCCAAATGCAGCACCATAAAAGCTTTTCGGTACCATACCGGATCCAAGT TTAGTAAATATCATGAAATTTTTCACATTGATAACAAGGTTTTCTTAATT TTTGGACTTTCTTTCAAGAATCAACCAATGGACCCAATCACATCTCAAAT ATTACAACACATAAAAGTTCTTGAGGAAGTCAAGAACCTGAAACCGGATG TCCCGGCCGATGTGGAGAGATTGCTGCAATTGTTGCACCAATACGGTATT CGGGAGGTGCCACAAGAATTTGAGGTTGACGCTGCAGGTCAAATGGTACA AGTGGAAAACACTCAACGTAAAAAATGTTCTTTTCAACTGACCAGGGAGC ATTTACCAAATGGCTTCCAAAAATTGAAGGAGGTAATAGTTGATCATTTA AACAAAACTTAAACCGCTAATATACGGTTTTTTTCTATCCCGATCAGCCC AAATAGATTTTCTGTTGATCGAAAGGTGATCTTTGAAAGCTTGACTAAAA GCTCTTTTAATCGTAATTATATACAATTTCACTCTACTCAACAATACCAA TCTTTCTCCATTGAAATTTTTAGGTTTGGGTGGCTCTACTTCAAGACATG CCCATGACAGCCATGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCT CTTTGATGAATCAGCAAACAGAGAAATTGTCAAGAAGGTTTTAGGGGATG GCTCTATTTTGAACAAAGCAAGAATTCACCCAGTCAAGGTTTGCTATTTA TTTAGAGTGATGGCCAAGGCGCATAAACCAGGGGCTCCCTGCATCTGTCG ATAGTTATTTTTCAAGCCCTTTTAGTTTTGGCGCACGTTTTCTACACGAC AATAATAGCTGCGTGTAAATTTATGGAAACAAGGCATATCTTTTTGCTTA TTGGTGATATTTAACGTTAAATTTCGACAGTTTTACACTGCACCTTACAT GAATGATCAAATACACGTTTTTTTTTAAGAAACTAGTTCTACCAAGCAGC CTCAATGTTTCTTAAGAAATTTGCCATTTGAGCTTTAAAAATGTTTCTTA CATGTTTCAAAATTTTTTGACATAATCAGCTTCATGGAAGGCTGGATTGG AAGGATTTAAAAAAAAATGAATTAAAAAATGTTATTTTCTCATTCTCAGC CTCAGCATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAA AGTGTGTTTCTTAAAAAAAAACCGTGTACCAACTATATATCCATGCAGGG AAAATTAGAAAAGCAATGCACCGTGATTGAACCTGTAAGTAATGCACCGT GATTGAACCTTGTTACAGATTCTGTTAGCATCAAAGATGTATGAGCAAGG CAATGGTGATCAAGGGCAAAGCCATCAACAACAACAAAAAAATCAAACAA TGAGTCAATCAACCAAAGAACCACTTACTTGGAGACCAAACGCTGAAATC TCCAAAGCTCTCAATGATGCTTTCTACTTAAGTTTCAGAGTAAGCTCTAT TCTAGATATGCAGGCATGGTTAACATAGTCAAGCATTCTGCTATAACGAA TTCCTATGGCTCGTGCGCTAGAGTTTCATTTATCATTTGAACTTTTATAT ACTTGCTAAAATTGATTAGTTTTCTGGAGAATCTCTTTCATTATTTCCAT AGCAACCCGGCAAGAATTCTTCATTCCGTACGGACAAAAAGTTCATGTTA AATCTAGATGTTAGTGACTCTATGGATTGGGGTAACTGTGTAGGGTGTGA TTTCCTGACGCCCGCTGCCGCCTCTTTCGCCCTGGCCATGATTACGATGA ATGTTGAGCCACATTGTAGTGTGTTCGCTTTCGGGGGAACGCTTCAAAAT ATCGATCATTTATTGAAGAAGGATATGACCATCCTTGAAGCCATTCAAGT GGGACGCTCTGTAAGTCGACTTCACTATCAAGAAATCTTGTTTTAAATAT TCTCATTTCTTTATTTCTTCGAACTTGGGCCTCACATAAAACAGAACATC ATTCTTAGAACGTCAAAAATGTCTAATTCCGAATTCTATTTGAATCTTTC TATAGTTCGAACTAATTCCCAGTCCCCATCAGCATCAATTTTCAATATTC CCTTTCGACTTTGAATGAGCGAGACTAAAATATATACATTATCGGCCAAA ACTTAGCCGGCCTCAATTATTAGTCGGCCCTAATTTTAGTCACATCATCA AAATTTAGTCACTTAGGGTCGACTAAATTTTGGCCGATAAGGTATAAAAA ATCGACTTCCATGTCAATAGCTTTATTCCGCAATTTTCTGTGCTTTCTCT TTTTATCAGTTATGTCATCATGCCTCATTAAACTTAACTTAGGACATCCG TATTATCTTTCAGCTCAATTTCGGTGCAACAGACTGTGCTCTACCAATGG TGCACGCCACGCAGAACAGGCTGGATGTGGACGTTTTCATCGTTTACACT GACTCCGAAACTTGGATTGGAAAAGTTCATCCTTCTGAAGCTTTAAAGAA TTATCGGCAAAAGATGAACAAACCGGATGCCAAACTCATCGTCATGGCAA TGAAGGTTTGTCTGTTCTCCACACGGCCCTGTAATGTAGTCTGTGCCTCT AAAGAATCCTGCATTGTAACACACATGCTTAATTTGTCGNTTTCACGGCC CTGTAATGTAGTCTGTGCCTCTAAAGAATCCTCCATTGTAACACGCATGC TTAATTTGTCGTTCTTTAAACCATATATAGTTAATTCCCGTGATAAACAA AGAGGAATGAATCTGTAGGGGTGGTACATGTCACTTTCGGTCGGGGCTGT GGACGGCCAAATATGTCGATTTTTATGAAATTTGTCGTTTTTTTGTCTAT TTTTAGTAATGCAGGATTCTTTAGATAAACCCCTCATGATATTATGATAT CTCGTTATAAAAAGTGATGGCATCAATTCATTTCAGTCGGTTTCAATCCT GTAAAACCTTAAAAACACACGGTGAATAGGTCATCAACTTCTAGTTATTA GAATTCTGTAGATAAACCCTTTTCTTTTTCATTGTATTCGAACTTTTTGT ATGACTTCCCAAGGGAATGTTGTGGTGCTTATAAAGACTTTTTTACAGGT TTTGTAAGGGATTGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGT ACGGGATTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGG AATGATGTGATGCATATTAAAACTTTTTTACAGGTTTTGTACGGGATTGT TTTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGATTGTTTTGG TGAATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGAAT ATAAAGAGTTTTTTACAGGTTTTGTACGGGAATGTTGTGATGCATATAAA GACTTTTTTACAGGTTTTGTACGGGATTGTTGATGGTGAATAAAAAGACT TTTTTACAGGTTTTGTACGGGATTGTTGTGGTGAATATGAAGACTTTTTT ACAGGTTTTGTACGGGATTGTTGTGGTGAATATAAAGAGTTTTTTACAGG TTTTGTACGGGATTGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTG TACGGGATTGTTGTGGTGCATATAAAAACTTTTTACAGGTTTTGTACGGG AATGATGTGATGCATATTAAAACTTTTTTACCTGTTTTTACAGGTTTTGT ACGGGGTTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGG ATTGTTGTGATGTATATAAAGAATATTTTACAGATTTTGTACGGGATTGT TGTGCAGAATATAAAGACCTTTTTACAGGTTTAGTACGGTAATGTTGTAG TGAATATAAAGACCTTTTTTACAGGTTTTATACGGGATTGTTGTGGTGCA TATATATTTTATTTTATTGGACCTACCCCAGTGGAGGTCCTATAAATTAA CCGTTGTATGTTCGTTCGTTCGTTACCAGCTTTTCTCGAGATTGGCTCAT TAGTTTTTTCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAA TGTGACGGAGCCCGATTTTCGAAAAAAAAAATTTTTAGGCAAATTTGGGC CAAAAAACGACTAAAAACAGGTTTTTTGGACTTTGTGAAAAATTGGATCA TTAATTTTTTCTGATTTTTTGTAGGATAGTAGGGTATCATCATAGGTGAA AGATGGCTCAAGCAGATTTTTGCAAAAAAAATTTATTGGCTTAAAAAACG CATGTTTATCTATAAGAATCAATATTAATAAGCATACATCAATGTTCTTA GTCAAATTACTAAATTTTATTATTTTTTTACCTTTGGTTGCTTGGCGTGT TTTTGTAGAAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATC AATTACTTAGGTATTAGCTTTTCTCGAGATTGCCTGTTTCATTCTTTATT ATTTTTGCACAAAGATGCGTAACTATAAACCCTCGAATGTGACGGAGCCC AATTTTCGAAAAGAAATGTTTTTGGGCAAATTTTGGCCAAAAAACGGGTT TTTTGGACTTTAAAAAATTGGATCATTAATTTTTTCAAATTTTTTTGAAT GAAAATAGGTAAAAGATGGCTCAAGCAGATTTTTGTAAAAACGAATTTTT TTAGCTCGAAAAACGCATCGTTATCTATAAGAATCACTATTAATAAGCAT ACATCAATGTTCTTAGTCAAATTACTCAATATTTTGATGAGATCGATGTG TTTTTTTGCTCACGAAGTCTTGAATATGAAAGAATATTTATAGAGCATGA AATTTTGGTTTCTAAACGGTTTTTTATAAGAAACAAACGATTAATTNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTTTTATTT TATTTTTATTTTCCAATTTATTTAACGTTGGGCTGACATCGTTATAATTA AAAATACTAATTAATACCAACTATATAGAATACAATATAGTATAGAATAA TAAATTTAAAATTTTTTTTTATGTGTATATTTTACAATGACAAATATTTG TAAGATTTAGTTTTTCTTTCAGACTTTTTTTTTACAGTTTTTGTACGGGA TTGTTGTGGTGAATATAAATACCTTTTTTACAGGTTTTGTACGGGAATGT TGTGGTGCATATAAAAACTTTTTTTACAGGCTTTGTACGGGATTGTTGTG GTGAATATAAAAACCTTTTTTACAGGTTTTGTACGGGATGGTTGTGGTGA ATATAAAGACCTTTTTTACAGGTTTTTGTACGGGATTGTTGTGGTGAATA TAAAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGCATATAAAG ACCTTTTTTACAGGTTTTTGTACGGGATTGTTGTGGTGAATATAAAAACC TTTTTTACAGGTTTTGTACGGGATGGTTGTGGTGAATATAAAGACCTTTT TTACAGGTTTTGTACGGGATGGTTGTGGTGAATATAAAGACCTTTTTTAC AGGTTTTGTACGGGATTGTTGTGGTGCATATAAAAACTTTTTACAGGTTT TGTACGGGAATGATGTGATGCATATTAAAACTTTTTTACCTGTTTTTACA GGTTTTGTACGGGATTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTT TGTACGGGATTGTTGTGGTGCATAGAAAGACTTTTTTTACAGGTTTTGTA CGGGAATGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGTACGGGA ATGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGTT GTGGTGAATATTTATATTGTATCTGTGTGAAATCAAGTGCGTATTGTATC TGTATTGGTGAATATAAAGACTTTTTTCTTTTCTCCATTTTTCAAGGTGA ATGATTTCACGATCGCCGATCGACTCGATCGCGGTATGTTTGACATTTGC GGATTCGATTCTAACGTACCTGATATGATCTGCGAGATCGCCAGAGGAAA CATTTCTTAAAATCACCAAACAAAGAGAAATGAAATCTAAACTTTTCTGG TTAGCCTTCGTTTACATGGCTCTAGCTGCTTGTGAATTTGGTGCTGGTGG TCTTAACATTCTATCAGGAAAAACGGAATTGATACATTATCAACCAGCAA AGAGAACGACCAACCTTGACTTATTGCAGGGTTCTTGGATTACTGGACAG GTGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044129XLOC_044129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071019-exon-scaffold_58-1575043694:1035625..1036772TCONS_00071019-exon-scaffold_58-1575043694:1035625..1036772Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1034941..1035204TCONS_00071019-exon-scaffold_58-1575043694:1034941..1035204Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1034585..1034749TCONS_00071019-exon-scaffold_58-1575043694:1034585..1034749Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1033834..1034004TCONS_00071019-exon-scaffold_58-1575043694:1033834..1034004Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1033413..1033670TCONS_00071019-exon-scaffold_58-1575043694:1033413..1033670Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1032768..1032959TCONS_00071019-exon-scaffold_58-1575043694:1032768..1032959Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1028917..1029226TCONS_00071019-exon-scaffold_58-1575043694:1028917..1029226Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1035625..1036772TCONS_00071019-exon-scaffold_58-1510915933:1035625..1036772Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1034941..1035204TCONS_00071019-exon-scaffold_58-1510915933:1034941..1035204Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1034585..1034749TCONS_00071019-exon-scaffold_58-1510915933:1034585..1034749Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1033834..1034004TCONS_00071019-exon-scaffold_58-1510915933:1033834..1034004Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1033413..1033670TCONS_00071019-exon-scaffold_58-1510915933:1033413..1033670Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1032768..1032959TCONS_00071019-exon-scaffold_58-1510915933:1032768..1032959Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1028917..1029226TCONS_00071019-exon-scaffold_58-1510915933:1028917..1029226Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1035625..1036772TCONS_00071019-exon-scaffold_58-1491911889:1035625..1036772Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1034941..1035204TCONS_00071019-exon-scaffold_58-1491911889:1034941..1035204Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1034585..1034749TCONS_00071019-exon-scaffold_58-1491911889:1034585..1034749Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1033834..1034004TCONS_00071019-exon-scaffold_58-1491911889:1033834..1034004Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1033413..1033670TCONS_00071019-exon-scaffold_58-1491911889:1033413..1033670Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1032768..1032959TCONS_00071019-exon-scaffold_58-1491911889:1032768..1032959Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1028917..1029226TCONS_00071019-exon-scaffold_58-1491911889:1028917..1029226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1028917..1036772 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.2242 13.0099 10.5619 10.3043 41.1957 33.5012 40.252 43.6298 25.4558 43.8841 25.3261 18.2914 45.7484 42.2767 31.1238 31.0984 30.5874 27.5057 34.1753 45.9062 26.36 27.141 22.8086 25.3723 29.4946 30.0522 24.5135 24.7038 17.0691 15.0836
Blast
BLAST of TCONS_00071019 vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 4.895e-65
Identity = 159/464 (34.27%), Postives = 243/464 (52.37%), Query Frame = 3
Query:  903 WGRARRRGVGNFYTDSSKDANRLLLLMTKYKQRHNWNHVQTLGYCHPKMTGDEEQVKNIVLQYCTRGXXXXXXXXXXXXIDGNQPMDPITSQILQHIKVLEEVKNLKPDVPADVERLLQLLHQYGIREVPQEFEVDAAGQMVQVENTQRKKCSFQLTREHLPNGFQKLKEVWVALLQDMPMTAMIRNLGKMTSLGLFDESANREI--VKKVLGDGSILNKARIHPVKILLASKMYEXXXXXXXXXXXXXXXXXXXXXXTKEPLTWRPNAEISKALNDAFYLSFR--QPGKNSSFRTDKKFMLNLDVSDSMDWGNCVGCDFLTPAAASFALAMITMNVEPHCSVFAFGGTLQNIDHLLKKDMTILEAIQVGRSLNFGATDCALPMVHATQNRLDVDVFIVYTDSETWIGKVHPSEALKNYRQKMNKPDAKLIVMAMKVNDFTIADRLDRGMFDICGFDSNVPDMI 2282
            WGRA R+ + ++Y +  K    L L +TKYKQR+ W+H   L   H K + +      IV +Y T+G +++ +      +   + +   T ++L++++ +E+VK  + ++      ++ L+ ++                              +L REHL     K KEVW ALLQ+MP+TA++RNLGKMT+  +  E  N E+  V + L +  +L KARIHP  IL+A + Y+ G+G                   +  L WRP+ EI KAL+ AFY +F+  +P       T K+F+L +DVS SM+    V    L  +  + A+ M+    E    V AF   +  +   +  DMT+ + +     +  G TDC+LPM+ A +     DVFIV+TD+ET+ G VHP+ AL+ YR+KM+ P AKLIV  M  N FTIAD  DRGM D+CGFD+   D+I
Sbjct:  144 WGRALRKAIADWYNE--KGGMALALAVTKYKQRNGWSHKDLLRLSHLKPSSEG---LAIVTKYITKGWKEVHE------LYKEKALSVETEKLLKYLEAVEKVKRTRDEL-----EVIHLIEEH------------------------------RLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVL-EPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGL------------------RGKLKWRPDEEILKALDAAFYKTFKTVEP-------TGKRFLLAVDVSASMN--QRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEM--VPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVI 530          
The following BLAST results are available for this feature:
BLAST of TCONS_00071019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RO604.895e-6534.2760 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G... [more]
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