TCONS_00071019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071019
Unique NameTCONS_00071019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071019 ID=TCONS_00071019|Name=TCONS_00071019|organism=Clytia hemisphaerica|type=transcript|length=2508bp
acagaaaaaaaaacaaaagataaataaataaacaaaaacacaTTGACGGC
CACCCTTAGGGGTGAAGAACCACAACTACTATGGATCCATTCAAAAAACT
TGCCCTTTTGAAGGCCAAAATGACCGGCATGAGTAGGGCCCAGATTGCGG
AAGCCATCCGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCA
GACCTTACTACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGC
TGCAGGTGGTTTTTCCTACACTATAGATAATATAACCAGACTGAAAAGAT
ATCTGATCTTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAgca
gaaaatattcaaaatattccaGTTGTTGAAGAACTTTTAAAGGAGGGTAA
AGGAAAGGAGGTGATTGATTTGATCGTTCAGTTTGCTCGTGAAGCACGTA
TCTCAAAAGAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTAT
CAGGGAGATGCCATGTATGAAGATAGGACCATACAACGAGCTGCTTATGA
CAGTATCGTCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGG
AGCTTTGTAAACCATGTTATCAAAATAATTGGAAGCCTTTAACCAAGCCA
GTCAGTAAGACGCAACTTCGGAAGAAAGCAAAACAAGAGGCAAAACAAGC
AGCTCAACAGCAGAATCAAAGGCCTTCCACCTCCACCGAAATCCCAGCTG
CTCAACCACCGTCAGCAAAAGTGCCAGTTGAAACAtgtgaaattgttgaa
gagggTGAACctccaaagaaaaagaaaaagaagatgaagaagaagaaaaa
accaaAGGAACCCAAACCTCAAACAacgcaaaaattcaaaaaatcttcaA
GTTGGGGACGTGCTAGACGGCGTGGTGTCGGCAATTTTTACACCGATTCA
AGTAAAGATGCCAATCGATTGTTATTGTTGATGACGAAGTACAAACAACG
TCATAATTGGAACCATGTTCAAACGTTGGGTTATTGTCATCCAAAAATGA
CGGGAGACGaggaacaagttaaaaacatcgtCCTCCAGTATTGCACACGT
GGCAAAGAAAAGTTGGACAAATATCTGGTCAAGAAAAAAATCGATGGGAA
TCAACCAATGGACCCAATCACATCTCAAATATTACAACACATAAAAGTTC
TTGAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCGATGTGGAGAGA
TTGCTGCAATTGTTGCACCAATACGGTATTCGGGAGGTGCCACAAGAATT
TGAGGTTGACGCTGCAGGTCAAATGGTACAAGTGGAAAACACTCAAcgta
aaaaatgttcttttcaaCTGACCAGGGAGCATTTACCAAATGGCTTCCAA
AAATTGAAGGAGGTTTGGGTGGCTCTACTTCAAGACATGCCCATGACAGC
CATGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCTCTTTGATGAAT
CAGCAAACAGAGAAATTGTCAAGAAGGTTTTAGGGGATGGCTCTATTTTG
AACAAAGCAAGAATTCACCCAGTCAAGATTCTGTTAGCATCAAAGATGTA
TGAGCAAGGCAATGGTGATCAAGGGCAAAgccatcaacaacaacaaaaaa
atcaaacaatgaGTCAATCAACCAAAGAACCACTTACTTGGAGACCAAAC
GCTGAAATCTCCAAAGCTCTCAATGATGCTTTCTACTTAAGTTTCAGACA
ACCCGGCAAGAATTCTTCATTCCGTACGGACAAAAAGTTCATGTTAAATC
TAGATGTTAGTGACTCTATGGATTGGGGTAACTGTGTAGGGTGTGATTTC
CTGACGCCCGCTGCCGCCTCTTTCGCCCTGGCCATGATTACGATGAATGT
TGAGCCACATTGTAGTGTGTTCGCTTTCGGGGGAACGCTTCAAAATATCG
ATCATTTATTGAAGAAGGATATGACCATCCTTGAAGCCATTCAAGTGGGA
CGCTCTCTCAATTTCGGTGCAACAGACTGTGCTCTACCAATGGTGCACGC
CACGCAGAACAGGCTGGATGTGGACGTTTTCATCGTTTACACTGACTCCG
AAACTTGGATTGGAAAAGTTCATCCTTCTGAAGCTTTAAAGAATTATCGG
CAAAAGATGAACAAACCGGATGCCAAACTCATCGTCATGGCAATGAAGGT
GAATGATTTCACGATCGCCGATCGACTCGATCGCGGTATGTTTGACATTT
GCGGATTCGATTCTAACGTACCTGATATGATCTGCGAGATCGCCAGAGGA
AACATTTCTTAAAATCACCAAACAAAGAGAAATGAAATCTAAACTTTTCT
GGTTAGCCTTCGTTTACATGGCTCTAGCTGCTTGTGAATTTGGTGCTGGT
GGTCTTAACATTCTATCAGGAAAAACGGAATTGATACATTATCAACCAGC
AAAGAGAACGACCAACCTTGACTTATTGCAGGGTTCTTGGATTACTGGAC
AGGTGGGT
Run BLAST on NCBI

transcript from alignment at scaffold_58:1028917..1036772-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071019 ID=TCONS_00071019|Name=TCONS_00071019|organism=Clytia hemisphaerica|type=transcript|length=7856bp|location=Sequence derived from alignment at scaffold_58:1028917..1036772- (Clytia hemisphaerica)
ACAGAAAAAAAAACAAAAGATAAATAAATAAACAAAAACACATTGACGGC
CACCCTTAGGGGTGAAGAACCACAACTACTATGGATCCATTCAAAAAACT
TGCCCTTTTGAAGGCCAAAATGACCGGCATGAGTAGGGCCCAGATTGCGG
AAGCCATCCGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCA
GACCTTACTACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGC
TGCAGGTGGTTTTTCCTACACTATAGATAATATAACCAGACTGAAAAGAT
ATCTGATCTTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAGCA
GAAAATATTCAAAATATTCCAGTTGTTGAAGAACTTTTAAAGGAGGGTAA
AGGAAAGGAGGTGATTGATTTGATCGTTCAGTTTGCTCGTGAAGCACGTA
TCTCAAAAGAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTAT
CAGGGAGATGCCATGTATGAAGATAGGACCATACAACGAGCTGCTTATGA
CAGTATCGTCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGG
AGCTTTGTAAACCATGTTATCAAAATAATTGGAAGCCTTTAACCAAGCCA
GTCAGTAAGACGCAACTTCGGAAGAAAGCAAAACAAGAGGCAAAACAAGC
AGCTCAACAGCAGAATCAAAGGCCTTCCACCTCCACCGAAATCCCAGCTG
CTCAACCACCGTCAGCAAAAGTGCCAGTTGAAACATGTGAAATTGTTGAA
GAGGGTGAACCTCCAAAGAAAAAGAAAAAGAAGATGAAGAAGAAGAAAAA
ACCAAAGGAACCCAAACCTCAAACAACGCAAAAATTCAAAAAATCTTCAA
GTTGGGGACGTGCTAGACGGCGTGGTGTCGGCAATTTTTACACCGATTCA
AGTAAAGATGCCAATCGATTGTTATTGTTGATGACGAAGTACAAACAACG
TCATAATTGGAACCATGTTCAAACGTTGGGTTATTGTCATCCAAAAATGA
CGGGAGACGAGGAACAAGTTAAAAACATCGTCCTCCAGTATTGCACACGT
GGCAAAGAAAAGTTGGACAAATATCTGGTCAAGAAAAAAATCGATGGGGT
AACGATATTTCATTCTTTTCTATTTCATTTTTTAAAAATTTGTAAGAAGA
GATGTGATAATTTCATCACTGTCTGTGTAGTGTAGGGAAAAGTTTTCCCA
AATCTCCAATTCTTTACTTACACAACATTTAAACAAAAGAAAGAACAACC
CCATTTTCAGAGCTGCGCGAGCACAAATTTTGAGAAATTCTTTTGTTTGT
TATACTTTTTCCGCAAAGAGGCTTCTTATTAAAAAAGAAGATCCTTAATA
TTTCCACTACCGTCCCTGCGCACTTCCGGGAGGTAATCGAAAAAGGTTGA
ATCCAAATGCAGCACCATAAAAGCTTTTCGGTACCATACCGGATCCAAGT
TTAGTAAATATCATGAAATTTTTCACATTGATAACAAGGTTTTCTTAATT
TTTGGACTTTCTTTCAAGAATCAACCAATGGACCCAATCACATCTCAAAT
ATTACAACACATAAAAGTTCTTGAGGAAGTCAAGAACCTGAAACCGGATG
TCCCGGCCGATGTGGAGAGATTGCTGCAATTGTTGCACCAATACGGTATT
CGGGAGGTGCCACAAGAATTTGAGGTTGACGCTGCAGGTCAAATGGTACA
AGTGGAAAACACTCAACGTAAAAAATGTTCTTTTCAACTGACCAGGGAGC
ATTTACCAAATGGCTTCCAAAAATTGAAGGAGGTAATAGTTGATCATTTA
AACAAAACTTAAACCGCTAATATACGGTTTTTTTCTATCCCGATCAGCCC
AAATAGATTTTCTGTTGATCGAAAGGTGATCTTTGAAAGCTTGACTAAAA
GCTCTTTTAATCGTAATTATATACAATTTCACTCTACTCAACAATACCAA
TCTTTCTCCATTGAAATTTTTAGGTTTGGGTGGCTCTACTTCAAGACATG
CCCATGACAGCCATGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCT
CTTTGATGAATCAGCAAACAGAGAAATTGTCAAGAAGGTTTTAGGGGATG
GCTCTATTTTGAACAAAGCAAGAATTCACCCAGTCAAGGTTTGCTATTTA
TTTAGAGTGATGGCCAAGGCGCATAAACCAGGGGCTCCCTGCATCTGTCG
ATAGTTATTTTTCAAGCCCTTTTAGTTTTGGCGCACGTTTTCTACACGAC
AATAATAGCTGCGTGTAAATTTATGGAAACAAGGCATATCTTTTTGCTTA
TTGGTGATATTTAACGTTAAATTTCGACAGTTTTACACTGCACCTTACAT
GAATGATCAAATACACGTTTTTTTTTAAGAAACTAGTTCTACCAAGCAGC
CTCAATGTTTCTTAAGAAATTTGCCATTTGAGCTTTAAAAATGTTTCTTA
CATGTTTCAAAATTTTTTGACATAATCAGCTTCATGGAAGGCTGGATTGG
AAGGATTTAAAAAAAAATGAATTAAAAAATGTTATTTTCTCATTCTCAGC
CTCAGCATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAA
AGTGTGTTTCTTAAAAAAAAACCGTGTACCAACTATATATCCATGCAGGG
AAAATTAGAAAAGCAATGCACCGTGATTGAACCTGTAAGTAATGCACCGT
GATTGAACCTTGTTACAGATTCTGTTAGCATCAAAGATGTATGAGCAAGG
CAATGGTGATCAAGGGCAAAGCCATCAACAACAACAAAAAAATCAAACAA
TGAGTCAATCAACCAAAGAACCACTTACTTGGAGACCAAACGCTGAAATC
TCCAAAGCTCTCAATGATGCTTTCTACTTAAGTTTCAGAGTAAGCTCTAT
TCTAGATATGCAGGCATGGTTAACATAGTCAAGCATTCTGCTATAACGAA
TTCCTATGGCTCGTGCGCTAGAGTTTCATTTATCATTTGAACTTTTATAT
ACTTGCTAAAATTGATTAGTTTTCTGGAGAATCTCTTTCATTATTTCCAT
AGCAACCCGGCAAGAATTCTTCATTCCGTACGGACAAAAAGTTCATGTTA
AATCTAGATGTTAGTGACTCTATGGATTGGGGTAACTGTGTAGGGTGTGA
TTTCCTGACGCCCGCTGCCGCCTCTTTCGCCCTGGCCATGATTACGATGA
ATGTTGAGCCACATTGTAGTGTGTTCGCTTTCGGGGGAACGCTTCAAAAT
ATCGATCATTTATTGAAGAAGGATATGACCATCCTTGAAGCCATTCAAGT
GGGACGCTCTGTAAGTCGACTTCACTATCAAGAAATCTTGTTTTAAATAT
TCTCATTTCTTTATTTCTTCGAACTTGGGCCTCACATAAAACAGAACATC
ATTCTTAGAACGTCAAAAATGTCTAATTCCGAATTCTATTTGAATCTTTC
TATAGTTCGAACTAATTCCCAGTCCCCATCAGCATCAATTTTCAATATTC
CCTTTCGACTTTGAATGAGCGAGACTAAAATATATACATTATCGGCCAAA
ACTTAGCCGGCCTCAATTATTAGTCGGCCCTAATTTTAGTCACATCATCA
AAATTTAGTCACTTAGGGTCGACTAAATTTTGGCCGATAAGGTATAAAAA
ATCGACTTCCATGTCAATAGCTTTATTCCGCAATTTTCTGTGCTTTCTCT
TTTTATCAGTTATGTCATCATGCCTCATTAAACTTAACTTAGGACATCCG
TATTATCTTTCAGCTCAATTTCGGTGCAACAGACTGTGCTCTACCAATGG
TGCACGCCACGCAGAACAGGCTGGATGTGGACGTTTTCATCGTTTACACT
GACTCCGAAACTTGGATTGGAAAAGTTCATCCTTCTGAAGCTTTAAAGAA
TTATCGGCAAAAGATGAACAAACCGGATGCCAAACTCATCGTCATGGCAA
TGAAGGTTTGTCTGTTCTCCACACGGCCCTGTAATGTAGTCTGTGCCTCT
AAAGAATCCTGCATTGTAACACACATGCTTAATTTGTCGNTTTCACGGCC
CTGTAATGTAGTCTGTGCCTCTAAAGAATCCTCCATTGTAACACGCATGC
TTAATTTGTCGTTCTTTAAACCATATATAGTTAATTCCCGTGATAAACAA
AGAGGAATGAATCTGTAGGGGTGGTACATGTCACTTTCGGTCGGGGCTGT
GGACGGCCAAATATGTCGATTTTTATGAAATTTGTCGTTTTTTTGTCTAT
TTTTAGTAATGCAGGATTCTTTAGATAAACCCCTCATGATATTATGATAT
CTCGTTATAAAAAGTGATGGCATCAATTCATTTCAGTCGGTTTCAATCCT
GTAAAACCTTAAAAACACACGGTGAATAGGTCATCAACTTCTAGTTATTA
GAATTCTGTAGATAAACCCTTTTCTTTTTCATTGTATTCGAACTTTTTGT
ATGACTTCCCAAGGGAATGTTGTGGTGCTTATAAAGACTTTTTTACAGGT
TTTGTAAGGGATTGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGT
ACGGGATTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGG
AATGATGTGATGCATATTAAAACTTTTTTACAGGTTTTGTACGGGATTGT
TTTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGATTGTTTTGG
TGAATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGAAT
ATAAAGAGTTTTTTACAGGTTTTGTACGGGAATGTTGTGATGCATATAAA
GACTTTTTTACAGGTTTTGTACGGGATTGTTGATGGTGAATAAAAAGACT
TTTTTACAGGTTTTGTACGGGATTGTTGTGGTGAATATGAAGACTTTTTT
ACAGGTTTTGTACGGGATTGTTGTGGTGAATATAAAGAGTTTTTTACAGG
TTTTGTACGGGATTGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTG
TACGGGATTGTTGTGGTGCATATAAAAACTTTTTACAGGTTTTGTACGGG
AATGATGTGATGCATATTAAAACTTTTTTACCTGTTTTTACAGGTTTTGT
ACGGGGTTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGG
ATTGTTGTGATGTATATAAAGAATATTTTACAGATTTTGTACGGGATTGT
TGTGCAGAATATAAAGACCTTTTTACAGGTTTAGTACGGTAATGTTGTAG
TGAATATAAAGACCTTTTTTACAGGTTTTATACGGGATTGTTGTGGTGCA
TATATATTTTATTTTATTGGACCTACCCCAGTGGAGGTCCTATAAATTAA
CCGTTGTATGTTCGTTCGTTCGTTACCAGCTTTTCTCGAGATTGGCTCAT
TAGTTTTTTCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAA
TGTGACGGAGCCCGATTTTCGAAAAAAAAAATTTTTAGGCAAATTTGGGC
CAAAAAACGACTAAAAACAGGTTTTTTGGACTTTGTGAAAAATTGGATCA
TTAATTTTTTCTGATTTTTTGTAGGATAGTAGGGTATCATCATAGGTGAA
AGATGGCTCAAGCAGATTTTTGCAAAAAAAATTTATTGGCTTAAAAAACG
CATGTTTATCTATAAGAATCAATATTAATAAGCATACATCAATGTTCTTA
GTCAAATTACTAAATTTTATTATTTTTTTACCTTTGGTTGCTTGGCGTGT
TTTTGTAGAAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATC
AATTACTTAGGTATTAGCTTTTCTCGAGATTGCCTGTTTCATTCTTTATT
ATTTTTGCACAAAGATGCGTAACTATAAACCCTCGAATGTGACGGAGCCC
AATTTTCGAAAAGAAATGTTTTTGGGCAAATTTTGGCCAAAAAACGGGTT
TTTTGGACTTTAAAAAATTGGATCATTAATTTTTTCAAATTTTTTTGAAT
GAAAATAGGTAAAAGATGGCTCAAGCAGATTTTTGTAAAAACGAATTTTT
TTAGCTCGAAAAACGCATCGTTATCTATAAGAATCACTATTAATAAGCAT
ACATCAATGTTCTTAGTCAAATTACTCAATATTTTGATGAGATCGATGTG
TTTTTTTGCTCACGAAGTCTTGAATATGAAAGAATATTTATAGAGCATGA
AATTTTGGTTTCTAAACGGTTTTTTATAAGAAACAAACGATTAATTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTTTTATTT
TATTTTTATTTTCCAATTTATTTAACGTTGGGCTGACATCGTTATAATTA
AAAATACTAATTAATACCAACTATATAGAATACAATATAGTATAGAATAA
TAAATTTAAAATTTTTTTTTATGTGTATATTTTACAATGACAAATATTTG
TAAGATTTAGTTTTTCTTTCAGACTTTTTTTTTACAGTTTTTGTACGGGA
TTGTTGTGGTGAATATAAATACCTTTTTTACAGGTTTTGTACGGGAATGT
TGTGGTGCATATAAAAACTTTTTTTACAGGCTTTGTACGGGATTGTTGTG
GTGAATATAAAAACCTTTTTTACAGGTTTTGTACGGGATGGTTGTGGTGA
ATATAAAGACCTTTTTTACAGGTTTTTGTACGGGATTGTTGTGGTGAATA
TAAAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGCATATAAAG
ACCTTTTTTACAGGTTTTTGTACGGGATTGTTGTGGTGAATATAAAAACC
TTTTTTACAGGTTTTGTACGGGATGGTTGTGGTGAATATAAAGACCTTTT
TTACAGGTTTTGTACGGGATGGTTGTGGTGAATATAAAGACCTTTTTTAC
AGGTTTTGTACGGGATTGTTGTGGTGCATATAAAAACTTTTTACAGGTTT
TGTACGGGAATGATGTGATGCATATTAAAACTTTTTTACCTGTTTTTACA
GGTTTTGTACGGGATTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTT
TGTACGGGATTGTTGTGGTGCATAGAAAGACTTTTTTTACAGGTTTTGTA
CGGGAATGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGTACGGGA
ATGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGTT
GTGGTGAATATTTATATTGTATCTGTGTGAAATCAAGTGCGTATTGTATC
TGTATTGGTGAATATAAAGACTTTTTTCTTTTCTCCATTTTTCAAGGTGA
ATGATTTCACGATCGCCGATCGACTCGATCGCGGTATGTTTGACATTTGC
GGATTCGATTCTAACGTACCTGATATGATCTGCGAGATCGCCAGAGGAAA
CATTTCTTAAAATCACCAAACAAAGAGAAATGAAATCTAAACTTTTCTGG
TTAGCCTTCGTTTACATGGCTCTAGCTGCTTGTGAATTTGGTGCTGGTGG
TCTTAACATTCTATCAGGAAAAACGGAATTGATACATTATCAACCAGCAA
AGAGAACGACCAACCTTGACTTATTGCAGGGTTCTTGGATTACTGGACAG
GTGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044129XLOC_044129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071019-exon-scaffold_58-1575043694:1035625..1036772TCONS_00071019-exon-scaffold_58-1575043694:1035625..1036772Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1034941..1035204TCONS_00071019-exon-scaffold_58-1575043694:1034941..1035204Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1034585..1034749TCONS_00071019-exon-scaffold_58-1575043694:1034585..1034749Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1033834..1034004TCONS_00071019-exon-scaffold_58-1575043694:1033834..1034004Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1033413..1033670TCONS_00071019-exon-scaffold_58-1575043694:1033413..1033670Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1032768..1032959TCONS_00071019-exon-scaffold_58-1575043694:1032768..1032959Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1575043694:1028917..1029226TCONS_00071019-exon-scaffold_58-1575043694:1028917..1029226Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1035625..1036772TCONS_00071019-exon-scaffold_58-1510915933:1035625..1036772Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1034941..1035204TCONS_00071019-exon-scaffold_58-1510915933:1034941..1035204Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1034585..1034749TCONS_00071019-exon-scaffold_58-1510915933:1034585..1034749Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1033834..1034004TCONS_00071019-exon-scaffold_58-1510915933:1033834..1034004Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1033413..1033670TCONS_00071019-exon-scaffold_58-1510915933:1033413..1033670Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1032768..1032959TCONS_00071019-exon-scaffold_58-1510915933:1032768..1032959Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1510915933:1028917..1029226TCONS_00071019-exon-scaffold_58-1510915933:1028917..1029226Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1035625..1036772TCONS_00071019-exon-scaffold_58-1491911889:1035625..1036772Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1034941..1035204TCONS_00071019-exon-scaffold_58-1491911889:1034941..1035204Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1034585..1034749TCONS_00071019-exon-scaffold_58-1491911889:1034585..1034749Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1033834..1034004TCONS_00071019-exon-scaffold_58-1491911889:1033834..1034004Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1033413..1033670TCONS_00071019-exon-scaffold_58-1491911889:1033413..1033670Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1032768..1032959TCONS_00071019-exon-scaffold_58-1491911889:1032768..1032959Clytia hemisphaericaexon
TCONS_00071019-exon-scaffold_58-1491911889:1028917..1029226TCONS_00071019-exon-scaffold_58-1491911889:1028917..1029226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1028917..1036772 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.2242	13.0099	10.5619	10.3043	41.1957	33.5012	40.252	43.6298	25.4558	43.8841	25.3261	18.2914	45.7484	42.2767	31.1238	31.0984	30.5874	27.5057	34.1753	45.9062	26.36	27.141	22.8086	25.3723	29.4946	30.0522	24.5135	24.7038	17.0691	15.0836
Blast
[Close]
BLAST of TCONS_00071019 vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 4.895e-65
Identity = 159/464 (34.27%), Postives = 243/464 (52.37%), Query Frame = 3 
Query:  903 WGRARRRGVGNFYTDSSKDANRLLLLMTKYKQRHNWNHVQTLGYCHPKMTGDEEQVKNIVLQYCTRGXXXXXXXXXXXXIDGNQPMDPITSQILQHIKVLEEVKNLKPDVPADVERLLQLLHQYGIREVPQEFEVDAAGQMVQVENTQRKKCSFQLTREHLPNGFQKLKEVWVALLQDMPMTAMIRNLGKMTSLGLFDESANREI--VKKVLGDGSILNKARIHPVKILLASKMYEXXXXXXXXXXXXXXXXXXXXXXTKEPLTWRPNAEISKALNDAFYLSFR--QPGKNSSFRTDKKFMLNLDVSDSMDWGNCVGCDFLTPAAASFALAMITMNVEPHCSVFAFGGTLQNIDHLLKKDMTILEAIQVGRSLNFGATDCALPMVHATQNRLDVDVFIVYTDSETWIGKVHPSEALKNYRQKMNKPDAKLIVMAMKVNDFTIADRLDRGMFDICGFDSNVPDMI 2282
            WGRA R+ + ++Y +  K    L L +TKYKQR+ W+H   L   H K + +      IV +Y T+G +++ +      +   + +   T ++L++++ +E+VK  + ++      ++ L+ ++                              +L REHL     K KEVW ALLQ+MP+TA++RNLGKMT+  +  E  N E+  V + L +  +L KARIHP  IL+A + Y+ G+G                   +  L WRP+ EI KAL+ AFY +F+  +P       T K+F+L +DVS SM+    V    L  +  + A+ M+    E    V AF   +  +   +  DMT+ + +     +  G TDC+LPM+ A +     DVFIV+TD+ET+ G VHP+ AL+ YR+KM+ P AKLIV  M  N FTIAD  DRGM D+CGFD+   D+I
Sbjct:  144 WGRALRKAIADWYNE--KGGMALALAVTKYKQRNGWSHKDLLRLSHLKPSSEG---LAIVTKYITKGWKEVHE------LYKEKALSVETEKLLKYLEAVEKVKRTRDEL-----EVIHLIEEH------------------------------RLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVL-EPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGL------------------RGKLKWRPDEEILKALDAAFYKTFKTVEP-------TGKRFLLAVDVSASMN--QRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEM--VPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVI 530
The following BLAST results are available for this feature:
BLAST of TCONS_00071019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RO604.895e-6534.2760 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G... [more]
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