TCONS_00071002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071002
Unique NameTCONS_00071002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071002 ID=TCONS_00071002|Name=TCONS_00071002|organism=Clytia hemisphaerica|type=transcript|length=1502bp
AatgttttgcagtgaggattggtttatttcattattttcaaatgtcTATC
AATTTCaatggtctgtgagaagggggtgcacTATTGAATTTGATTGTTAA
CTCATCCAAAAAACAAACGaaactctttttgaaaaacCGAGGTGCGCTTC
AGTTTGAGCGGAAAATAAATATGTAATTTGGTGTGTGTTTTACACGACAT
TGCGATAAACAAAACAATCTTTTATCTGATGGAAGTAGGAAGAATTTTCA
TTCAATGTTCAACATAATAATGGCTGCCACTTTTGACAGAGAAAAGATTT
TGTGTATGGTGTTTATTTTACACGACAGCAAAACAAACGTAATAGCTTTT
CATGAAAAACCACCGAGTTGCAAGGATATAACTTAAGTGGGGGAAGAACA
TCCATACCACTTAAACTCGGCTATTATTCATGATGGACATGCGACTCATT
TTGATCACTTTGGCGCTTCAATGGAATGCTCTTTATGGGTTTCCACTTAA
AGaAGAAAGTGACGTTCTTCCTGAACTGGAATACCGAGATTTGCTGGTTT
CAGGATACATCCCACCTCAAAACGACACTTCGGACGTCTACTTACCATCT
CAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGA
CCCTTCGGACGTCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTT
CAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCT
CAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGA
CCCTTCGGACGTCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTT
CAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCT
CAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGA
CCCTTCGGACGTCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTT
CAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCT
CAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGA
CCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTGGTTT
CAGAATATTTTCCACCTTTGGCAAATGATCCTTTACTTGGCTTAGACAAT
TATTTTCCCCCaggaaaagaagattttttatcaaagaaaCGAAACGCCGA
ACGTGATCAGGAAGATAAGCTTTTGGAAAGCTTCCTTCATTAAGTCAAGC
CACAAACATTTGAACATTGAATATTCTTTGATcaagttgaaatatttttt
ggcaAATGCTTTATTTAGATTAACATGTATTTTTATAAGGCGTTTTCTCT
CTACATTTTCGTATTGAAAAAGTATAATTCAATAAATAACTCATAATTAT
CCTTCCAACGAACACATAGCAGCATATGAAAAGATTTTCACCTATTTCTA
AC
Run BLAST on NCBI

transcript from alignment at scaffold_58:939668..941304-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071002 ID=TCONS_00071002|Name=TCONS_00071002|organism=Clytia hemisphaerica|type=transcript|length=1637bp|location=Sequence derived from alignment at scaffold_58:939668..941304- (Clytia hemisphaerica)
AATGTTTTGCAGTGAGGATTGGTTTATTTCATTATTTTCAAATGTCTATC
AATTTCAATGGTCTGTGAGAAGGGGGTGCACTATTGAATTTGATTGTTAA
CTCATCCAAAAAACAAACGAAACTCTTTTTGAAAAACCGAGGTGCGCTTC
AGTTTGAGCGGAAAATAAATATGTAATTTGGTGTGTGTTTTACACGACAT
TGCGATAAACAAAACAATCTTTTATCTGATGGAAGTAGGAAGAATTTTCA
TTCAATGTTCAACATAATAATGGCTGCCACTTTTGACAGAGAAAAGATTT
TGTGTATGGTGTTTATTTTACACGACAGCAAAACAAACGTAATAGCTTTT
CATGAAAAACCACCGAGTTGCAAGGATATAACTTAAGTGGGGGAAGAACA
TCCATACCACTTAAACTCGGCTATTATTCATGATGGACATGCGACTCATT
TTGATCACTTTGGCGCTTCAATGGAATGCTCTTTATGGGTTTCCACTTAA
AGGTATTTTGTTGAGTTTTATTTAACCAATAAAATGTGTCCATTATAGCT
TTTTTTCTTGAAGTATTTTCTCATTATCACAATATCCCACCTCATTGATT
GTGATTGAAGATGAATTTGATTTCTTTGTATTTTTAGAAGAAAGTGACGT
TCTTCCTGAACTGGAATACCGAGATTTGCTGGTTTCAGGATACATCCCAC
CTCAAAACGACACTTCGGACGTCTACTTACCATCTCAACAAAAAGACGAT
TTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTA
CCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCAC
CTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGAT
TTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTA
CCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCAC
CTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGAT
TTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTA
CCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCAC
CTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGAT
TTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTA
CCTGCCATCTCAACAAAAAGACGATTTGCTGGTTTCAGAATATTTTCCAC
CTTTGGCAAATGATCCTTTACTTGGCTTAGACAATTATTTTCCCCCAGGA
AAAGAAGATTTTTTATCAAAGAAACGAAACGCCGAACGTGATCAGGAAGA
TAAGCTTTTGGAAAGCTTCCTTCATTAAGTCAAGCCACAAACATTTGAAC
ATTGAATATTCTTTGATCAAGTTGAAATATTTTTTGGCAAATGCTTTATT
TAGATTAACATGTATTTTTATAAGGCGTTTTCTCTCTACATTTTCGTATT
GAAAAAGTATAATTCAATAAATAACTCATAATTATCCTTCCAACGAACAC
ATAGCAGCATATGAAAAGATTTTCACCTATTTCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044124XLOC_044124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071002-exon-scaffold_58-1575043694:940803..941304TCONS_00071002-exon-scaffold_58-1575043694:940803..941304Clytia hemisphaericaexon
TCONS_00071002-exon-scaffold_58-1575043694:939668..940667TCONS_00071002-exon-scaffold_58-1575043694:939668..940667Clytia hemisphaericaexon
TCONS_00071002-exon-scaffold_58-1510915933:940803..941304TCONS_00071002-exon-scaffold_58-1510915933:940803..941304Clytia hemisphaericaexon
TCONS_00071002-exon-scaffold_58-1510915933:939668..940667TCONS_00071002-exon-scaffold_58-1510915933:939668..940667Clytia hemisphaericaexon
TCONS_00071002-exon-scaffold_58-1491911889:940803..941304TCONS_00071002-exon-scaffold_58-1491911889:940803..941304Clytia hemisphaericaexon
TCONS_00071002-exon-scaffold_58-1491911889:939668..940667TCONS_00071002-exon-scaffold_58-1491911889:939668..940667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:939668..941304 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105746	0.154678	0.179596	0	0	0	0.408257	1.1788	4.72646	0.520732	2.32724	3.22748	1.43614	0.148853	2.83039	0.00870365	0	1.00303	0.15004	0.0533833	0.0511206	0.0748045	0	0	0.0567673	0.0506635	0.217498	0.0773732	0	0.0310282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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