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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070997 ID=TCONS_00070997|Name=TCONS_00070997|organism=Clytia hemisphaerica|type=transcript|length=947bp
ATCGATCAGATGAAATTTGATACGCATGAGAAGTCATTTCTCCGGACCAA
TGAACTGCATCCTaaatcagccaatcagaatgcagtatttgttaaaaaat
caaattgccATTGATTTTAGCAGGTAATAAGTATTTTGGAACAATCTGAG
AAAATCAAATCATTCGAAAATTAGCTTCATTACATCTAGGACTGTGGTGA
GCTAAGaaaaaaataaaaatggcagCTCGATTCATTCTTAGCTGTCTCCT
TGTTGGAGTAGCTATGGCTAACGCCAAAACTTTACACGaAATGTTGAAAC
GTGATGCCAACCCATGTTCCGCACCATGCCCAGCTGCATGTGCCCCAGCA
TGTGCTCCAGTTTGTTGTGctccaccaccaccacctccaccaccaccccc
accaccacctccaccaccaccaccacccccaccaccaccaccagcaCCAA
TTCCAGGAAACCCAGGACCCCCAGGACGTCCAGGACCACCAGGAGCCCCA
GGACCAGCTGGACCACCCGGACTTCCAGGACCACCAGGAATGCCAGGACC
ACCAGGACCAGGAGGATTACCAGGACAACCCgccccaccaccaccaccat
gTCCATCAGTCTGTGTTACTCAATGTGTACCAACTTGCCCACAATACTGT
TGCCCAGCCAGAAAGTAAATCATTGGAGGATTTTAGAGACTATTCtaatt
ttatttcaagttttgaATGGTTGACAACTTGGATTGCAGTTTTTGGTGTG
ATGTGCCAACTCTGTGATTTCGACACCAATCACAtcacaaataaataaat
attttgataagaGTAATTTATTTTCgaattatttttgttaaaaactatga
aattataactatagaaattatattgtattttttacattgaaaatattgaa
attctacAAAATGATGCAAATGAAACAAAATTCATTTTCCattccat Run BLAST on NCBI protein sequence of minicollagen 1 >TCONS_00070997-protein ID=TCONS_00070997-protein|Name=minicollagen 1|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAARFILSCLLVGVAMANAKTLHEMLKRDANPCSAPCPAACAPACAPVCC
APPPPPPPPPPPPPPPPPPPPPPPPAPIPGNPGPPGRPGPPGAPGPAGPP
GLPGPPGMPGPPGPGGLPGQPAPPPPPCPSVCVTQCVPTCPQYCCPARK Run BLAST on NCBI transcript from alignment at scaffold_58:891162..892603- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070997 ID=TCONS_00070997|Name=TCONS_00070997|organism=Clytia hemisphaerica|type=transcript|length=1442bp|location=Sequence derived from alignment at scaffold_58:891162..892603- (Clytia hemisphaerica)
ATCGATCAGATGAAATTTGATACGCATGAGAAGTCATTTCTCCGGACCAA
TGAACTGCATCCTAAATCAGCCAATCAGAATGCAGTATTTGTTAAAAAAT
CAAATTGCCATTGATTTTAGCAGGTAATAAGTATTTTGGAACAATCTGAG
AAAATCAAATCATTCGAAAATTAGCTTCATTACATCTAGGACTGTGGTGA
GCTAAGGTAAGCACAAAAAGTTTTTATTTTTTCAGAAAATGGAGATGAAC
TGGAATCAAATTTTGAATAAACAAATATCTATCTCTAGTTTCTCGAATGT
TTGAAATAATAGTTCGAAATATTCAAATTGGTGTCAGGAGATTTTTACGC
TCTTAATTTGAGGTTTAAATTTCGTCTCAAGAAAAGTTTTTTTTTCTTTC
AGAAAATACAATTGAATTAATGAAATTTCTTTTTTCTTTTCAGAAAAAAA
TAAAAATGGCAGCTCGATTCATTCTTAGCTGTCTCCTTGTTGGAGTAGCT
ATGGCTAACGCCAAAACTTTACACGGTAAGAAGGTTTTAATCTATTTTGT
TCTTTTTGATCATTTTCATTATCCTTTGTTCTTCAATGAATTTACATTGA
CTTTTTTTAACTATTCAACTTAAGGGCGGTTGTGTTTAATCGAATTAACT
CGCACATTATTTTCGTAAAATTTCAAATTCGCGAAAATTTGAATAAACAC
AAACTTATATCGAAAGTTTTTATTTATTTAATCTAAATGAAATTTCTGAC
ATTTACTTATGAATCTTTTTTCATTTTTTACAGAAATGTTGAAACGTGAT
GCCAACCCATGTTCCGCACCATGCCCAGCTGCATGTGCCCCAGCATGTGC
TCCAGTTTGTTGTGCTCCACCACCACCACCTCCACCACCACCCCCACCAC
CACCTCCACCACCACCACCACCCCCACCACCACCACCAGCACCAATTCCA
GGAAACCCAGGACCCCCAGGACGTCCAGGACCACCAGGAGCCCCAGGACC
AGCTGGACCACCCGGACTTCCAGGACCACCAGGAATGCCAGGACCACCAG
GACCAGGAGGATTACCAGGACAACCCGCCCCACCACCACCACCATGTCCA
TCAGTCTGTGTTACTCAATGTGTACCAACTTGCCCACAATACTGTTGCCC
AGCCAGAAAGTAAATCATTGGAGGATTTTAGAGACTATTCTAATTTTATT
TCAAGTTTTGAATGGTTGACAACTTGGATTGCAGTTTTTGGTGTGATGTG
CCAACTCTGTGATTTCGACACCAATCACATCACAAATAAATAAATATTTT
GATAAGAGTAATTTATTTTCGAATTATTTTTGTTAAAAACTATGAAATTA
TAACTATAGAAATTATATTGTATTTTTTACATTGAAAATATTGAAATTCT
ACAAAATGATGCAAATGAAACAAAATTCATTTTCCATTCCAT Coding sequence (CDS) from alignment at scaffold_58:891162..892603- >TCONS_00070997 ID=TCONS_00070997|Name=TCONS_00070997|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_58:891162..892603- (Clytia hemisphaerica)
AAATGTTGAAACGTGATGCCAACCCATGTTCCGCACCATGCCCAGCTGCA
TGTGCCCCAGCATGTGCTCCAGTTTGTTGTGCTCCACCACCACCACCTCC
ACCACCACCCCCACCACCACCTCCACCACCACCACCACCCCCACCACCAC
CACCAGCACCAATTCCAGGAAACCCAGGACCCCCAGGACGTCCAGGACCA
CCAGGAGCCCCAGGACCAGCTGGACCACCCGGACTTCCAGGACCACCAGG
AATGCCAGGACCACCAGGACCAGGAGGATTACCAGGACAACCCGCCCCAC
CACCACCACCATGTCCATCAGTCTGTGTTACTCAATGTGTACCAACTTGC
CCACAATACTGTTGCCCAGCCAGAAAGTAAATGGCAGCTCGATTCATTCT
TAGCTGTCTCCTTGTTGGAGTAGCTATGGCTAACGCCAAAACTTTACACG
AAATGTTGAAACGTGATGCCAACCCATGTTCCGCACCATGCCCAGCTGCA
TGTGCCCCAGCATGTGCTCCAGTTTGTTGTGCTCCACCACCACCACCTCC
ACCACCACCCCCACCACCACCTCCACCACCACCACCACCCCCACCACCAC
CACCAGCACCAATTCCAGGAAACCCAGGACCCCCAGGACGTCCAGGACCA
CCAGGAGCCCCAGGACCAGCTGGACCACCCGGACTTCCAGGACCACCAGG
AATGCCAGGACCACCAGGACCAGGAGGATTACCAGGACAACCCGCCCCAC
CACCACCACCATGTCCATCAGTCTGTGTTACTCAATGTGTACCAACTTGC
CCACAATACTGTTGCCCAGCCAGAAAGTAAATGGCAGCTCGATTCATTCT
TAGCTGTCTCCTTGTTGGAGTAGCTATGGCTAACGCCAAAACTTTACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070997-exon-scaffold_58-1575043694:892398..892603 | TCONS_00070997-exon-scaffold_58-1575043694:892398..892603 | Clytia hemisphaerica | exon |
| TCONS_00070997-exon-scaffold_58-1575043694:892079..892160 | TCONS_00070997-exon-scaffold_58-1575043694:892079..892160 | Clytia hemisphaerica | exon |
| TCONS_00070997-exon-scaffold_58-1575043694:891162..891820 | TCONS_00070997-exon-scaffold_58-1575043694:891162..891820 | Clytia hemisphaerica | exon |
| TCONS_00070997-exon-scaffold_58-1510915933:892398..892603 | TCONS_00070997-exon-scaffold_58-1510915933:892398..892603 | Clytia hemisphaerica | exon |
| TCONS_00070997-exon-scaffold_58-1510915933:892079..892160 | TCONS_00070997-exon-scaffold_58-1510915933:892079..892160 | Clytia hemisphaerica | exon |
| TCONS_00070997-exon-scaffold_58-1510915933:891162..891820 | TCONS_00070997-exon-scaffold_58-1510915933:891162..891820 | Clytia hemisphaerica | exon |
| TCONS_00070997-exon-scaffold_58-1491911889:892398..892603 | TCONS_00070997-exon-scaffold_58-1491911889:892398..892603 | Clytia hemisphaerica | exon |
| TCONS_00070997-exon-scaffold_58-1491911889:892079..892160 | TCONS_00070997-exon-scaffold_58-1491911889:892079..892160 | Clytia hemisphaerica | exon |
| TCONS_00070997-exon-scaffold_58-1491911889:891162..891820 | TCONS_00070997-exon-scaffold_58-1491911889:891162..891820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:891162..892603 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008160 | Collagen |
Blast
The following BLAST results are available for this feature:
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