TCONS_00070992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070992
Unique NameTCONS_00070992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070992 ID=TCONS_00070992|Name=TCONS_00070992|organism=Clytia hemisphaerica|type=transcript|length=2621bp
CTTTATGAGGATCATTAATTCTATTTGTTATTAACAATTTACCTTACCAT
TTAAATTCTTAGAATCAGTTTATGCCTAGTagcaaattatttgaaaaatt
ataaaaaatggaGGACATGGATTGGCTagatgaaagtgaaaatttagaaa
atgatttcaattctttgaaacataaacatacaaagGATGGATTTCGTGAA
GGAATTTCCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAGG
TTTCAAATCATCtggcatatttttcgaaaaactttCTCATTTCAGAGGGA
AAGTCAGtgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAAA
GAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttga
aaataaccAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGGA
AGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTCT
ATGGATAACACTACAATAGATACACTTATTGATGGCTTTGATAATATGCA
ACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGAT
GCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAACA
CATGATACTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATAA
ATTAAAGGGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATTG
AACATGAAATGACTTTGATAATGACAAATTTTGATTCcgatacaaaaaat
caaattataaaatgtttaaaaagtattgaaaaatagGCATTGTTATTATT
TCAAGACAAGACTTGCATTCCCATATAAATATAGCTAATATAAACAATGT
TTGGTAATGTCGCTTTTATTGCCAGTGGTGGTGAACAGTTTCTTGTCTCT
AATACATAACAACACATGCcccttttcaatattttattatataCTTATCA
GTTAATGAAGGTCGAAAACACATATaataatttgttaaaaaaataaacca
CTTCTCTTGTGTTATTTACAtaatattcgaatatttcttttgATCTTACT
CAGAAACACGTAGTGCCGATTCTTCTCGGAGCAAACCACTTATTTGTGCA
CTGTTTGTTTTCACAGATGTTTCATTGCTTTGACATTAAAGGTCTAGTTC
TCTAACATGTGTGTTTATTTTTTGCTACAACAAGCTTTAGAGCAAGCAGG
TGCGCAAGTTGGAGCACAAGTTGGACCACATGGCattggtggaggtggtg
gagctGGAAGGTTGATGACTGTTGGTGGAAGGTTGACGTGTTGGCATGGT
GGTGCAGCGCAAGGGGCTGGGGCTGGTGGAGCACATGGTGGGGCGGCACA
TGGCATAGGTGGTGGTGCGCATGGTGGGGCAGCACATGGCATAGGTGGTG
GTGCACATGGAGGGGCAGCACATGGCATAGGTGGTGGTGCACATGGTGGA
GCAGCGCATGGCATAGGTGGTGGTGCGCATGGTGGGGCGGCACAAGGCAT
AGGTGGTGGTGCACATGGTGGGGCAGCACATGGCATAGGTGGTGGTGCGC
ATGGTGGGGCAGCACAAGGCATAGGTGGTGGTGCGCATGGTGGGGCAGCA
CAAGGCATAGGTGGAGGTGCGCATGGTGGGGCGGCACAAGGCATAGGTGG
TGGTGCACATGGTGGGGCTGCACATGGCATAGCCATTGGCATTGGTGGAG
GCATGCATGGTGGGGCTGCACATGGCATGGGTGGAGGCATGCATGGTGGG
GCTGCACATGGCATGGGTGGAGGAGGTGGTGCGCAACAGCTTGGTCGGCA
GGCGGGGTAGCAAGCTCTTGGACATCCAGCAGGGCATGGTGGGGGAGCTC
GAGCAGGTGGTGGGAGAGCAGGTCTACAACAAGCTGGTGCACAAGATGGT
TGACACATAGGCATTGGTGGTGGTGGAGGAGGGGGCATGCAACATGCTGG
TGCACATGAGGGTTGGCACATAGGCATAGGGGGTGGAGGTGGTGGCATGC
AACAAGCAGGAGCACAAGAGGGCTGACAAGCTGGCATAGGTGGTGGGGCA
CATGGAGGTGCAGCACATGGCATGGGTGGTGGGGCACATGGAGGTGCAGC
ACATGGCATGGGTGGTGGGGCACATGGAGGTGCAGCACATGGCATAGGGG
GTGGTCGAGGTGGAGCGTTACAACACCCTGGCATAGCTTGACATTGTGAT
GGACAAGGCATAGGTGCAGCAGGTTGTGCAGCGATCATGGATGACCAATG
ACTACAGATTGGTGCGCAGCCAAAGGCTGGCAtaggtggtggtggtggtg
gtggaggtggtgcaGCGCAGCAGCTTGGCTGGCAGGCTGGTGCACATGCG
GCAGCACATCCCATTccacatgggtttgcacttctCTTCTCGATCTCttt
aaaataagaaaacatGTTATTTATGATGATATTCAGAATTAATAATAAAC
AATGAAGTATTGCTTTTTTGTATTCTCTCTCTCTTTCAGGttcagataaa
aataaaaagtaaacaagaaagtcaaatcaaaatgaaaaatgttgataGAT
GTACACTTACCAAGTTCTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_58:848100..851511-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070992 ID=TCONS_00070992|Name=TCONS_00070992|organism=Clytia hemisphaerica|type=transcript|length=3412bp|location=Sequence derived from alignment at scaffold_58:848100..851511- (Clytia hemisphaerica)
CTTTATGAGGATCATTAATTCTATTTGTTATTAACAATTTACCTTACCAT
TTAAATTCTTAGAATCAGTTTATGCCTAGTAGCAAATTATTTGAAAAATT
ATAAAAAATGGAGGACATGGATTGGCTAGATGAAAGTGAAAATTTAGAAA
ATGATTTCAATTCTTTGAAACATAAACATACAAAGGTAAATACTTTTTTA
AGAATTTTTGATTTTCTCTCAGTCTAAGCACTTTGTTGATTCAAGTTCAT
TTTGGAAGAAACAATGTCTTGTAAAAATCAGTACCAATGATAAATAATCA
ATTGTATGTCTAGGCCTTCATGCTGCTTCAGCTTCTTGTTTATATATGAT
GCACACTTCTTTATAAGATTAGTGTTTTTTGGCTGATGGTGGAGCATTCT
ATCAAATCTATCAAAGATGTCTGATGAAGTTTGCATAGAGTTTTCATATT
TCACAAATAAAATGTGCTTTAATAACACAACATTACAGTAATTCTTTTGA
AAAAATGTTATTTTATTATATAAGGATGGATTTCGTGAAGGAATTTCCCA
GGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAGGTTTCAAATCAT
CTGGCATATTTTTCGAAAAACTTTCTCATTTCAGAGGGAAAGTCAGGTAA
GTTAATAACTATACAAACTATAAAGCTCTTGAAAAAGACTTGATGATGTT
ACTGTTTTACTCCACTTTGTTTCTTCCCCTTCCTCTGCCATGTATCTGTT
TTTCAATTATTTATACTTCACATTAAATAAATGGTAGCTGTATCAAATAT
TTGTTTATTTTGTTTGTTTTAGTGCGATATATATGTTTCTTATGAATCAG
CCTGCTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGATCACCAA
GCTTGAAGATTTTGAAAATAACCAAAGTCATATTGATGAAATAGCTGCTC
AGAATAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAAC
ACAAGGCATGATTCTATGGATAACACTACAATAGATACACTTATTGATGG
CTTTGATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAG
AACTTAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCA
CCCCCCTCGAAAACACATGATACTAGTTATATTTACGAAAACTCCCAGAA
CATCTTTGACAATAAATTAAAGGGAGATTTAGATGAACATATTGGAACTA
TCAAGAATTTAATTGAACATGAAATGACTTTGATAATGACAAATTTTGAT
TCCGATACAAAAAATCAAATTATAAAATGTTTAAAAAGTATTGAAAAATA
GGCATTGTTATTATTTCAAGACAAGACTTGCATTCCCATATAAATATAGC
TAATATAAACAATGTTTGGTAATGTCGCTTTTATTGCCAGTGGTGGTGAA
CAGTTTCTTGTCTCTAATACATAACAACACATGCCCCTTTTCAATATTTT
ATTATATACTTATCAGTTAATGAAGGTCGAAAACACATATAATAATTTGT
TAAAAAAATAAACCACTTCTCTTGTGTTATTTACATAATATTCGAATATT
TCTTTTGATCTTACTCAGAAACACGTAGTGCCGATTCTTCTCGGAGCAAA
CCACTTATTTGTGCACTGTTTGTTTTCACAGATGTTTCATTGCTTTGACA
TTAAAGGTCTAGTTCTCTAACATGTGTGTTTATTTTTTGCTACAACAAGC
TTTAGAGCAAGCAGGTGCGCAAGTTGGAGCACAAGTTGGACCACATGGCA
TTGGTGGAGGTGGTGGAGCTGGAAGGTTGATGACTGTTGGTGGAAGGTTG
ACGTGTTGGCATGGTGGTGCAGCGCAAGGGGCTGGGGCTGGTGGAGCACA
TGGTGGGGCGGCACATGGCATAGGTGGTGGTGCGCATGGTGGGGCAGCAC
ATGGCATAGGTGGTGGTGCACATGGAGGGGCAGCACATGGCATAGGTGGT
GGTGCACATGGTGGAGCAGCGCATGGCATAGGTGGTGGTGCGCATGGTGG
GGCGGCACAAGGCATAGGTGGTGGTGCACATGGTGGGGCAGCACATGGCA
TAGGTGGTGGTGCGCATGGTGGGGCAGCACAAGGCATAGGTGGTGGTGCG
CATGGTGGGGCAGCACAAGGCATAGGTGGAGGTGCGCATGGTGGGGCGGC
ACAAGGCATAGGTGGTGGTGCACATGGTGGGGCTGCACATGGCATAGCCA
TTGGCATTGGTGGAGGCATGCATGGTGGGGCTGCACATGGCATGGGTGGA
GGCATGCATGGTGGGGCTGCACATGGCATGGGTGGAGGAGGTGGTGCGCA
ACAGCTTGGTCGGCAGGCGGGGTAGCAAGCTCTTGGACATCCAGCAGGGC
ATGGTGGGGGAGCTCGAGCAGGTGGTGGGAGAGCAGGTCTACAACAAGCT
GGTGCACAAGATGGTTGACACATAGGCATTGGTGGTGGTGGAGGAGGGGG
CATGCAACATGCTGGTGCACATGAGGGTTGGCACATAGGCATAGGGGGTG
GAGGTGGTGGCATGCAACAAGCAGGAGCACAAGAGGGCTGACAAGCTGGC
ATAGGTGGTGGGGCACATGGTGGGGCGGCACATGGCATGGGTGGTGGGGC
ACATGGAGGTGCAGCACATGGCATAGGCATAGGCATTGGTGGTGGGGCAC
ATGGTGGAGCAGCGCAAGGCATAGGTGGTGGTGCACATGGTGGAGCAGCA
CATGGCATAGGTGGTGGGGCACATGGAGGTGCAGCACATGGCATAGGCAT
AGGCATTGGTGGTGGGGCACATGGTGGAGCAGCGCAAGGCATAGGTGGTG
GTGCACATGGTGGAGCAGCACATGGCATAGGTGGTGGGGCACATGGAGGT
GCAGCACATGGCATGGGTGGTGGGGCACATGGAGGTGCAGCACATGGCAT
GGGTGGTGGGGCACATGGAGGTGCAGCACATGGCATAGGGGGTGGTCGAG
GTGGAGCGTTACAACACCCTGGCATAGCTTGACATTGTGATGGACAAGGC
ATAGGTGCAGCAGGTTGTGCAGCGATCATGGATGACCAATGACTACAGAT
TGGTGCGCAGCCAAAGGCTGGCATAGGTGGTGGTGGTGGTGGTGGAGGTG
GTGCAGCGCAGCAGCTTGGCTGGCAGGCTGGTGCACATGCGGCAGCACAT
CCCATTCCACATGGGTTTGCACTTCTCTTCTCGATCTCTTTAAAATAAGA
AAACATGTTATTTATGATGATATTCAGAATTAATAATAAACAATGAAGTA
TTGCTTTTTTGTATTCTCTCTCTCTTTCAGGTTCAGATAAAAATAAAAAG
TAAACAAGAAAGTCAAATCAAAATGAAAAATGTTGATAGATGTACACTTA
CCAAGTTCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044120XLOC_044120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070992-exon-scaffold_58-1575043694:851327..851511TCONS_00070992-exon-scaffold_58-1575043694:851327..851511Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1575043694:850866..850987TCONS_00070992-exon-scaffold_58-1575043694:850866..850987Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1575043694:848896..850689TCONS_00070992-exon-scaffold_58-1575043694:848896..850689Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1575043694:848100..848619TCONS_00070992-exon-scaffold_58-1575043694:848100..848619Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1510915933:851327..851511TCONS_00070992-exon-scaffold_58-1510915933:851327..851511Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1510915933:850866..850987TCONS_00070992-exon-scaffold_58-1510915933:850866..850987Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1510915933:848896..850689TCONS_00070992-exon-scaffold_58-1510915933:848896..850689Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1510915933:848100..848619TCONS_00070992-exon-scaffold_58-1510915933:848100..848619Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1491911889:851327..851511TCONS_00070992-exon-scaffold_58-1491911889:851327..851511Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1491911889:850866..850987TCONS_00070992-exon-scaffold_58-1491911889:850866..850987Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1491911889:848896..850689TCONS_00070992-exon-scaffold_58-1491911889:848896..850689Clytia hemisphaericaexon
TCONS_00070992-exon-scaffold_58-1491911889:848100..848619TCONS_00070992-exon-scaffold_58-1491911889:848100..848619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:848100..851511 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.222787	0.118376	0.15051	0	0.45646	0.279986	14.442	12.4194	9.12058	15.3302	21.7119	10.7116	37.5454	36.3948	24.1443	87.1351	45.2905	43.5705	0	0.018083	34.4223	46.0268	35.829	32.6971	16.5083	22.6489	6.27518	1.01505	0.378245	0.248198
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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