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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070976 ID=TCONS_00070976|Name=TCONS_00070976|organism=Clytia hemisphaerica|type=transcript|length=2213bpRun BLAST on NCBI protein sequence of TCONS_00070976-protein >TCONS_00070976-protein ID=TCONS_00070976-protein|Name=TCONS_00070976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp MKEDGKSEENLFSKDVNVLYKEFDQRKCTLHISISLTINSSNHRKELYVRRun BLAST on NCBI transcript from alignment at scaffold_58:635499..646128- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070976 ID=TCONS_00070976|Name=TCONS_00070976|organism=Clytia hemisphaerica|type=transcript|length=10630bp|location=Sequence derived from alignment at scaffold_58:635499..646128- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:635499..646128- >TCONS_00070976 ID=TCONS_00070976|Name=TCONS_00070976|organism=Clytia hemisphaerica|type=CDS|length=33099bp|location=Sequence derived from alignment at scaffold_58:635499..646128- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070976 vs. Swiss-Prot (Human)
Match: SAS6 (Spindle assembly abnormal protein 6 homolog OS=Homo sapiens GN=SASS6 PE=1 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 7.611e-101 Identity = 200/476 (42.02%), Postives = 321/476 (67.44%), Query Frame = 1
Query: 85 VNVLYKEFDQRKCTLHISISL-TINSSNHRKELYVRLTNPNDLLFLHSMTLGEEDFLNLKKQQGLLVDFAAFPQKFIELLELCINEQTNNVPRFXXXXXXXXXXX--XXXXFDVVETNPFKHLVHLSLKFLPGNDEEIKRYLASCLKTLQEENTTVRQNLSSTENELSNRLSCTQQLLNEKTKELDQLRGESEQRINNATSSLQRDLNEAQLKFXXXXXXXXXXXXXXXXXXDSRYNKMMSDLEQKLRTTQASNKELVDQKYRFEGLIRDLKSRLQNLEEEKEVTNKDLSKLRRQNTNLDTDRHERDKTLNHLRTRVAVLEQELKDKQQVILRTNELMENSSENKRRMEFDLEAKQNTIMKLEQTIKSVSAEVIKGNEIIQKLQTEMRSLKQRVKMMNIVTTKQEKLIEEKDILLKENEEKISSLKQLEDQHQEEAKKLKQSMEELSLKLNESQETLKNNENVISWLNKQLNEQTL 1503
+ V K+ ++R+ ++ +SI L ++++ HRK+L +RLT+ D FL+++ + EEDF +LK QQGLLVDF AFPQKFI+LL+ C E +PRFLL L + +++ + + +VVETNPFKHL HLSLK LPGND EIK++LA CLK +EE ++ Q+L ++ + +L T++ L EK +ELD+LR E T+ ++L + K Q Q + ++Q E ++K+ + + + + L+ +L +A+NK+L ++KY+ + IR+LK++L +EEE + T +++ LRR+N+ LD + HE++K +N L+T+VAVLEQE+KDK Q++LRT E + E K +E + E Q + KLE TIKS+SAE++K NEII+KLQ ++++L ++K+ N VT +QEKL+ EK+ L++ ++++ + Q ++E KL++ +E KL ES++ LKNNE +I+WLNK+LNE L
Sbjct: 12 LQVKCKDCEERRVSIRMSIELQSVSNPVHRKDLVIRLTDDTDPFFLYNLVISEEDFQSLKFQQGLLVDFLAFPQKFIDLLQQCTQEHAKEIPRFLLQLVSPAAILDNSPAFLNVVETNPFKHLTHLSLKLLPGNDVEIKKFLAGCLKCSKEEKLSLMQSL----DDATKQLDFTRKTLAEKKQELDKLRNEWASHTAALTNKHSQELTNEKEKALQAQVQYQQQHEQQKKDLEILHQQNIHQLQNRLSELEAANKDLTERKYKGDSTIRELKAKLSGVEEELQRTKQEVLSLRRENSTLDVECHEKEKHVNQLQTKVAVLEQEIKDKDQLVLRTKEAFDTIQEQKVVLEENGEKNQVQLGKLEATIKSLSAELLKANEIIKKLQGDLKTLMGKLKLKNTVTIQQEKLLAEKEEKLQKEQKELQDVGQSLRIKEQEVCKLQEQLEATVKKLEESKQLLKNNEKLITWLNKELNENQL 483 The following BLAST results are available for this feature:
BLAST of TCONS_00070976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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