TCONS_00070971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070971
Unique NameTCONS_00070971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070971 ID=TCONS_00070971|Name=TCONS_00070971|organism=Clytia hemisphaerica|type=transcript|length=596bp
CTGCATTTATCCTATCACAActttttttgcagattttgttttgggtaaaa
tttgttttgaaggTGGGCAGCATTTGCTTGGAGCGTAATTTGGACATTCA
CATTTGCATTTCAAGAAATTATCACATTGATATCCATCAGGACAAAGTTT
GTGACCGAAAATTGGAATTCTACATGGTCGGCGTGTTGGTGGAATGGAGT
TTCCATTGATCATCTTGTTGGCTGAAGTGTTGTTGAGTTTTGGCGATGAG
GTGTTTTTGAGAAgattgaaactgattttcttcaAAGATTTGGTTTTGGG
CAAACTTTGTTTCGAAGGTGGGCAGCATTTACTTGGAGCGTAATTTGGAC
ATTCACATTTGCATTTCAAGAAATTATCACATTTATATCCATCAGGACAA
AGTTTGTGACCAAAAATTGGAATTCTACATGGTCGGCGTGTTGGTGGAAT
GGAGTTTCCATTGATCTTCTGGTTGACTGAAGTGCTGTCGAGTTTTGGCG
ATGAGGTGTTTTTGAGAAgattgaaactgattttcttcaAAGGTTtggtt
tttggcaaaatttgttTCGAAGGTGGGCAGCATTTGCTTGGAGCAT
Run BLAST on NCBI

transcript from alignment at scaffold_58:590291..591396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070971 ID=TCONS_00070971|Name=TCONS_00070971|organism=Clytia hemisphaerica|type=transcript|length=1106bp|location=Sequence derived from alignment at scaffold_58:590291..591396- (Clytia hemisphaerica)
CTGCATTTATCCTATCACAACTTTTTTTGCAGATTTTGTTTTGGGTAAAA
TTTGTTTTGAAGGTGGGCAGCATTTGCTTGGAGCGTAATTTGGACATTCA
CATTTGCATTTCAAGAAATTATCACATTGATATCCATCAGGACAAAGTTT
GTGACCGAAAATTGGAATTCTACATGGTCGGCGTGTTGGTGGAATGGAGT
TTCCATTGATCATCTTGTTGGCTGAAGTGTTGTTGAGTTTTGGCGATGAG
GTGTTTTTGAGAAGATTGAAACTGATTTTCTTCAAAGATTTGGTTTTGGG
CAAACTTTGTTTCGAAGGTGGGCAGCATTTACTTGGAGCGTAATTTGGAC
ATTCACATTTGCATTTCAAGAAATTATCACATTTATATCCATCAGGACAA
AGTTTGTGACCAAAAATTGGAATTCTACATGGTCGGCGTGTTGGTGGAAT
GGAGTTTCCATTGATCTTCTGGTTGACTGAAGTGCTGTCGAGTTTTGGCG
ATGAGGTGTTTTTGAGAAGATTGAAACTGATTTTCTTCAAAGGTTTGGTT
TTTGGCAAAATTTGTTTCGAAGGTAGGCAGCATTTACTTGGAGCATAATC
TGGACATTCACATTTGCATTTCAAGAAATTATCACATTTATATCCATCAG
GACAAAGTTTGTGGCCGAAAATTGGAATTCTACATGGTCGGCGTGTTGGT
GGAATGGAGTTTCCATTGATCTTATGGTTGACTGAAGTGCTGTCGAGTTT
TAGCGATGAGGTGTTTTTGAGAAGATTGAAACTGATTTTCTTCAAAGGCT
TGGTTTTTGGCAAAATTTGTTTCGAAGGTGGGCAGCATTTGCTTGGAGCA
TAATCTGGACATTCACATTTGCATTTCAAGAAGTTATCGCATTGATATCC
ATCAGGACAAAGTTTGTGGCCGAAAATTGGAATTCTACATGGCCGGCGTG
TTGGTGGAATGGAGTTTCCATTGATCTTCTGGTTGACTGAAGTGTTGCCG
AGTTTTGGCGATGAGGTGTTTTTGAGAAGATTGAAACTGATTTTCTTCAA
AGGTTTGGATTTTGGCAAAATTTGTTTCGAAGGTGGGCAGCATTTGCTTG
GAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044110XLOC_044110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070971-exon-scaffold_58-1575043694:590825..591396TCONS_00070971-exon-scaffold_58-1575043694:590825..591396Clytia hemisphaericaexon
TCONS_00070971-exon-scaffold_58-1575043694:590291..590314TCONS_00070971-exon-scaffold_58-1575043694:590291..590314Clytia hemisphaericaexon
TCONS_00070971-exon-scaffold_58-1510915933:590825..591396TCONS_00070971-exon-scaffold_58-1510915933:590825..591396Clytia hemisphaericaexon
TCONS_00070971-exon-scaffold_58-1510915933:590291..590314TCONS_00070971-exon-scaffold_58-1510915933:590291..590314Clytia hemisphaericaexon
TCONS_00070971-exon-scaffold_58-1491911889:590825..591396TCONS_00070971-exon-scaffold_58-1491911889:590825..591396Clytia hemisphaericaexon
TCONS_00070971-exon-scaffold_58-1491911889:590291..590314TCONS_00070971-exon-scaffold_58-1491911889:590291..590314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:590291..591396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.247254	0.0488459	0.0589305	0.22068	0.0386259	0	0	0	0.0304847	0	0.0260277	0.0837951	0	0	0	0	0	0	0	0.0477807	0	0	0.502812	0.20123	0.0508754	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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