TCONS_00070970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070970
Unique NameTCONS_00070970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070970 ID=TCONS_00070970|Name=TCONS_00070970|organism=Clytia hemisphaerica|type=transcript|length=594bp
TTTAAAAGCCTTACAAAGCGCTTCCCATGAAAATATAATAACAATAGGAA
AGCAGACATGTCTTCTAGTCTGTGTTCAGTGTTGTTTTTATGCTTGGCTG
TTTGTtattttgctgatgtcagcatgaGTAGAGCAGTGAATTGTGCGTCT
AAGAGATGGCATAGTTCAATTGGTTGTCAGGAAGTAAAAGAATTAAAATC
GATCAAGAGAGAAGTTCATTCCAGGGAGAAATTGAATCGTCTGTTGTTGA
AGTATTTGAGAAGCAGTATGCGATCACTGAGGTTCGGCGGACCGAGAGGA
ACCAAAAGGGCCgataaacaaaagaagaatGGAAAAGTGGTGGTGGTTGA
CGATTTGAAATAATCGTCAACGGTATCATCTTATCgtcaaaatattatat
ttttaaaattgttcaagaaaaaaaatttatgtgttttacTAGGATTTGGG
TTAGAAGGAATATATGAATGAAATTTCAAGTGATGATAactttgttgatt
tttcttttcttactACTGGAGGAAACTAAAAGTTAttcttaaggcttggg
gacacgagaaggtTTTTTTTCGTGTCGGTAgaggtggagacacg
Run BLAST on NCBI

protein sequence of TCONS_00070970-protein

>TCONS_00070970-protein ID=TCONS_00070970-protein|Name=TCONS_00070970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MSSSLCSVLFLCLAVCYFADVSMSRAVNCASKRWHSSIGCQEVKELKSIK
REVHSREKLNRLLLKYLRSSMRSLRFGGPRGTKRADKQKKNGKVVVVDDL
K
Run BLAST on NCBI

transcript from alignment at scaffold_58:583099..584322-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070970 ID=TCONS_00070970|Name=TCONS_00070970|organism=Clytia hemisphaerica|type=transcript|length=1224bp|location=Sequence derived from alignment at scaffold_58:583099..584322- (Clytia hemisphaerica)
TTTAAAAGCCTTACAAAGCGCTTCCCATGAAAATATAATAACAATAGGAA
AGCAGACATGTCTTCTAGTCTGTGTTCAGTGTTGTTTTTATGCTTGGCTG
TTTGTTATTTTGCTGATGTCAGCATGAGTAGAGCAGTGAATTGTGCGTCT
AAGAGATGGCATAGTTCAATTGGTTGTCAGGAAGTAAAAGAATTAAAATC
GATCAAGAGAGAAGTTCATTCCAGGGAGAAATGTAAGTATATTTTTCTCG
CAACGATGAGGAGCTATAGCTGGCAGTATATACAGTTAAGTGTGAGAATC
TAGCGTCTTATGTAGAATACAGCTTTTTGACCACCTTGCTCTAATCAACG
GCAAATGAAATATTTGGTTTTGGGAATGAAAAAAGTACGAAAAGTGATGT
TCGACGTTTGATTTGCGACCACGACCACGTACAGTTCTGCATAACGTATA
CAGCATGAACATTGCAACTTTTTGCCCGGTCTAAAGTTCTCAGGATAGGA
AAAGATTGTCAATTTCTCTCATCCGAGACAATACTGTGTCTTATTGCCCC
GTCGTTTCTAGTCAAATTAGATACCAGATATGTTATAACTGGGTTGTAGA
TTGCAATTTGATGAGGCTCGACTGTTCTTAATCTATTGGTACTTTGAGTC
TCAAATTGTTCTTATCCTGTTCTTATTTATAAGGTGAAATTGAGGCTTCA
TACCCAACTTTTACTTGCTTTGCCCCCTAAATTGCTTGAAATTTATTGAT
TTCAGGCTCAACACTGTTCTAAAATTGTCTTATTGTTTGGTAATTTTGAG
CCTCATTGTTCTTATAAAAAAGTGTATCAATTTACCTACTAACCTTCTTG
TCTTATTTTCAGTGAATCGTCTGTTGTTGAAGTATTTGAGAAGCAGTATG
CGATCACTGAGGTTCGGCGGACCGAGAGGAACCAAAAGGGCCGATAAACA
AAAGAAGAATGGAAAAGTGGTGGTGGTTGACGATTTGAAATAATCGTCAA
CGGTATCATCTTATCGTCAAAATATTATATTTTTAAAATTGTTCAAGAAA
AAAAATTTATGTGTTTTACTAGGATTTGGGTTAGAAGGAATATATGAATG
AAATTTCAAGTGATGATAACTTTGTTGATTTTTCTTTTCTTACTACTGGA
GGAAACTAAAAGTTATTCTTAAGGCTTGGGGACACGAGAAGGTTTTTTTT
CGTGTCGGTAGAGGTGGAGACACG

Coding sequence (CDS) from alignment at scaffold_58:583099..584322-

>TCONS_00070970 ID=TCONS_00070970|Name=TCONS_00070970|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_58:583099..584322- (Clytia hemisphaerica)
TGAATCGTCTGTTGTTGAAGTATTTGAGAAGCAGTATGCGATCACTGAGG
TTCGGCGGACCGAGAGGAACCAAAAGGGCCGATAAACAAAAGAAGAATGG
AAAAGTGGTGGTGGTTGACGATTTGAAATAAATGTCTTCTAGTCTGTGTT
CAGTGTTGTTTTTATGCTTGGCTGTTTGTTATTTTGCTGATGTCAGCATG
AGTAGAGCAGTGAATTGTGCGTCTAAGAGATGGCATAGTTCAATTGGTTG
TCAGGAAGTAAAAGAATTAAAATCGATCAAGAGAGAAGTTCATTCCAGGG
AGAAATTGAATCGTCTGTTGTTGAAGTATTTGAGAAGCAGTATGCGATCA
CTGAGGTTCGGCGGACCGAGAGGAACCAAAAGGGCCGATAAACAAAAGAA
GAATGGAAAAGTGGTGGTGGTTGACGATTTGAAATAAATGTCTTCTAGTC
TGTGTTCAGTGTTGTTTTTATGCTTGGCTGTTTGTTATTTTGCTGATGTC
AGCATGAGTAGAGCAGTGAATTGTGCGTCTAAGAGATGGCATAGTTCAAT
TGGTTGTCAGGAAGTAAAAGAATTAAAATCGATCAAGAGAGAAGTTCATT
CCAGGGAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044109XLOC_044109Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070970-proteinTCONS_00070970-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070970-exon-scaffold_58-1575043694:584091..584322TCONS_00070970-exon-scaffold_58-1575043694:584091..584322Clytia hemisphaericaexon
TCONS_00070970-exon-scaffold_58-1575043694:583099..583460TCONS_00070970-exon-scaffold_58-1575043694:583099..583460Clytia hemisphaericaexon
TCONS_00070970-exon-scaffold_58-1510915933:584091..584322TCONS_00070970-exon-scaffold_58-1510915933:584091..584322Clytia hemisphaericaexon
TCONS_00070970-exon-scaffold_58-1510915933:583099..583460TCONS_00070970-exon-scaffold_58-1510915933:583099..583460Clytia hemisphaericaexon
TCONS_00070970-exon-scaffold_58-1491911889:584091..584322TCONS_00070970-exon-scaffold_58-1491911889:584091..584322Clytia hemisphaericaexon
TCONS_00070970-exon-scaffold_58-1491911889:583099..583460TCONS_00070970-exon-scaffold_58-1491911889:583099..583460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:583099..584322 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.09215	0	0	0	0	0	0.118473	0.110913	0.077653	0.0961858	0.466801	0.0613714	25.495	31.4412	0	0	0	0	52.2113	65.3985	0	0.260747	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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